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ORCIDMichel Dumontier
Michel Justin Dumontier
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- affiliation: Maastricht University, The Netherlands
- affiliation (former): Carleton University, Ottawa, Canada
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2020 – today
- 2024
[j102]Amrapali Zaveri
, Pedro V. Hernandez Serrano, Michel Dumontier:
CrowdED 1.0: Statistical Guideline for Designing Optimal Crowdsourcing Experiments. Hum. Comput. 11(1): 29-46 (2024)- [j101]Claus Stadler, Muhammad Saleem, Qaiser Mehmood, Carlos Buil-Aranda, Michel Dumontier, Aidan Hogan, Axel-Cyrille Ngonga Ngomo:
LSQ 2.0: A linked dataset of SPARQL query logs. Semantic Web 15(1): 167-189 (2024) - [j100]Sabrina Kirrane, Oshani Seneviratne, Michel Dumontier:
Editorial of the special issue on semantic technologies for data and algorithmic governance. Semantic Web 15(3): 643-645 (2024) - [c85]Michel Dumontier:
Towards Biomedical Neurosymbolic AI: From Knowledge Infrastructure to Explainable Predictions. SeWeBMeDA@ESWC 2024 - [e13]Ali Hasnain, Alba Catalina Morales Tirado, Michel Dumontier, Dietrich Rebholz-Schuhmann:
Proceedings of the 7th Workshop on Semantic Web solutions for large-scale biomedical data analytics co-located with The ESWC 2024: Extended Semantic Web Conference (ESWC 2024), Hersonissos, Greece, May 26, 2024. CEUR Workshop Proceedings 3726, CEUR-WS.org 2024 [contents] - [i36]Gijs Wijngaard, Elia Formisano, Bruno L. Giordano, Michel Dumontier:
ACES: Evaluating Automated Audio Captioning Models on the Semantics of Sounds. CoRR abs/2403.18572 (2024) - [i35]N'Dah Jean Kouagou, Arif Yilmaz, Michel Dumontier, Axel-Cyrille Ngonga Ngomo:
Improving rule mining via embedding-based link prediction. CoRR abs/2406.10144 (2024) - [i34]Mahmoud Ibrahim, Yasmina Al Khalil, Sina Amirrajab, Chang Sun, Marcel Breeuwer, Josien P. W. Pluim, Bart Elen, Gokhan Ertaylan, Michel Dumontier:
Generative AI for Synthetic Data Across Multiple Medical Modalities: A Systematic Review of Recent Developments and Challenges. CoRR abs/2407.00116 (2024) - [i33]Gijs Wijngaard, Elia Formisano, Michele Esposito, Michel Dumontier:
Audio-Language Datasets of Scenes and Events: A Survey. CoRR abs/2407.06947 (2024) - 2023
- [j99]Onaopepo Adekunle, Arno Riedl, Michel Dumontier:
Evidence From Data Science on the Relationship Between Individual Beliefs/Behaviors Survey During COVID-19 Pandemic and Risk Preference. Adv. Artif. Intell. Mach. Learn. 3(4): 1800-1824 (2023) - [j98]Chang Sun, Johan van Soest, Michel Dumontier:
Generating synthetic personal health data using conditional generative adversarial networks combining with differential privacy. J. Biomed. Informatics 143: 104404 (2023) - [j97]Chang Sun, Marc Gallofré Ocaña, Johan van Soest, Michel Dumontier:
ciTIzen-centric DAta pLatform (TIDAL): Sharing distributed personal data in a privacy-preserving manner for health research. Semantic Web 14(5): 977-996 (2023) - [c84]Weiwei Wang, Stefano Bromuri, Michel Dumontier:
Graph-based Categorical Embedding. ESANN 2023 - [c83]Franz Krause, Xi Yan, Baptiste Darnala, Michel Dumontier:
On the Combination of Event Calculus and Empirical Semantic Drifts. ESWC Workshops 2023 - [c82]Gijs Wijngaard, Elia Formisano, Bruno L. Giordano, Michel Dumontier:
ACES: Evaluating Automated Audio Captioning Models on the Semantics of Sounds. EUSIPCO 2023: 770-774 - [c81]Michele Esposito, Giancarlo Valente, Yenisel Plasencia Calaña, Michel Dumontier, Bruno L. Giordano, Elia Formisano:
Semantically-Informed Deep Neural Networks For Sound Recognition. ICASSP 2023: 1-5 - [c80]Julie Loesch, Michel Dumontier, Remzi Celebi:
Enhanced GAT: Expanding Receptive Field with Meta Path-Guided RDF Rules for Two-Hop Connectivity. QALD/SemREC@ISWC 2023 - [c79]Elif Ozkan, Remzi Celebi, Arif Yilmaz, Vincent Emonet, Michel Dumontier:
Generating Knowledge Graph Based Explanations for Drug Repurposing Predictions. SWAT4HCLS 2023: 22-31 - [c78]Chang Sun, Johan van Soest, Michel Dumontier:
Analyze Decentralized Personal Health Data Using Solid, Digital Consent, and Federated Learning. SWAT4HCLS 2023: 169-170 - [e12]Ali Hasnain, Tracy Robson, Michel Dumontier, Alba Catalina Morales Tirado, Dietrich Rebholz-Schuhmann:
Proceedings of the 6th Workshop on Semantic Web Solutions for Large-Scale Biomedical Data Analytics co-located with ESWC 2023, Hersonissos, Greece, May 29, 2023. CEUR Workshop Proceedings 3466, CEUR-WS.org 2023 [contents] - [e11]Ali Hasnain, Tracy Robson, Michel Dumontier:
Proceedings of the 5th Workshop on Semantic Web solutions for large-scale biomedical data analytics co-located with the Extended Semantic Web Conference (ESWC 2022), Hersonissos, Greece, May 29, 2022. CEUR Workshop Proceedings 3573, CEUR-WS.org 2023 [contents] - [i32]Visara Urovi, Remzi Celebi, Chang Sun, Linda Rieswijk, Michael Erard, Arif Yilmaz, Kody Moodley, Parveen Kumar, Michel Dumontier:
TAPS Responsibility Matrix: A tool for responsible data science by design. CoRR abs/2302.01041 (2023) - [i31]Carlos Utrilla Guerrero, Maria Vivas Romero, Marc Dolman, Michel Dumontier:
FAIR Begins at home: Implementing FAIR via the Community Data Driven Insights. CoRR abs/2303.07429 (2023) - [i30]Onaopepo Adekunle, Arno Riedl, Michel Dumontier:
Models towards Risk Behavior Prediction and Analysis: A Netherlands Case study. CoRR abs/2311.04164 (2023) - 2022
- [j96]Rajaram Kaliyaperumal, Mark D. Wilkinson, Pablo Alarcón Moreno, Nirupama Benis, Ronald Cornet, Bruna dos Santos Vieira, Michel Dumontier, César Henrique Bernabé, Annika Jacobsen, Clémence M. A. Le Cornec, Mario Prieto Godoy, Núria Queralt-Rosinach, Leo J. Schultze Kool, Morris A. Swertz, Philip van Damme, K. Joeri van der Velde, Nawel Lalout, Shuxin Zhang, Marco Roos:
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data. J. Biomed. Semant. 13(1): 9 (2022) - [j95]Michel Dumontier:
A formalization of one of the main claims of "The FAIR Guiding Principles for scientific data management and stewardship" by Wilkinson et al. 20161. Data Sci. 5(1): 53-56 (2022) - [j94]Chang Sun, Johan van Soest, Annemarie Koster, Simone J. P. M. Eussen, Miranda T. Schram, Coen D. A. Stehouwer, Pieter C. Dagnelie, Michel Dumontier:
Studying the association of diabetes and healthcare cost on distributed data from the Maastricht Study and Statistics Netherlands using a privacy-preserving federated learning infrastructure. J. Biomed. Informatics 134: 104194 (2022) - [j93]Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Jan Hasenauer, Joseph L. Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Rahuman S. Malik-Sheriff, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, James C. Schaff, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr:
BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic Acids Res. 50(W1): 108-114 (2022) - [c77]Weiwei Wang, Yuchen Han, Stefano Bromuri, Michel Dumontier:
Semantic Correlation Graph Embedding. FUZZ-IEEE 2022: 1-10 - [c76]Julie Loesch, Louis Meeckers, Ilse van Lier, Alie de Boer, Michel Dumontier, Remzi Celebi:
Automated Identification of Food Substitutions Using Knowledge Graph Embeddings. SWAT4HCLS 2022: 19-28 - [c75]Chang Sun, Vincent Emonet, Michel Dumontier:
A Comprehensive Comparison of Automated FAIRness Evaluation Tools. SWAT4HCLS 2022: 44-53 - [c74]Olga L. Giraldo, Miguel Ruano, Robin A. Richardson, Remzi Celebi, Michel Dumontier, Tobias Kuhn:
Nanotate: Semantically Annotating Experimental Protocols with Nanopublications. SWAT4HCLS 2022: 64-73 - [i29]Visara Urovi, Vikas Jaiman, Arno Angerer, Michel Dumontier:
LUCE: A Blockchain-based data sharing platform for monitoring data license accountability and compliance. CoRR abs/2202.11646 (2022) - [i28]Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Joseph L. Hellerstein, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr:
BioSimulators: a central registry of simulation engines and services for recommending specific tools. CoRR abs/2203.06732 (2022) - [i27]Deepak R. Unni, Sierra A. T. Moxon, Michael Bada, Matthew H. Brush, Richard M. Bruskiewich, Paul A. Clemons, Vlado Dancík, Michel Dumontier, Karamarie Fecho, Gustavo Glusman, Jennifer J. Hadlock, Nomi L. Harris, Arpita Joshi, Tim E. Putman, Guangrong Qin, Stephen A. Ramsey, Kent A. Shefchek, Harold Solbrig, Karthik Soman, Anne E. Thessen, Melissa A. Haendel, Chris Bizon, Christopher J. Mungall:
Biolink Model: A Universal Schema for Knowledge Graphs in Clinical, Biomedical, and Translational Science. CoRR abs/2203.13906 (2022) - [i26]Chang Sun, Johan van Soest, Michel Dumontier:
Improving Correlation Capture in Generating Imbalanced Data using Differentially Private Conditional GANs. CoRR abs/2206.13787 (2022) - 2021
- [j92]Subhi Issa, Onaopepo Adekunle, Fayçal Hamdi, Samira Si-Said Cherfi, Michel Dumontier, Amrapali Zaveri:
Knowledge Graph Completeness: A Systematic Literature Review. IEEE Access 9: 31322-31339 (2021) - [j91]Kody Moodley, Linda Rieswijk, Tudor I. Oprea, Michel Dumontier:
InContext: curation of medical context for drug indications. J. Biomed. Semant. 12(1): 2 (2021) - [j90]Andreea Grigoriu, Amrapali Zaveri, Gerhard Weiss, Michel Dumontier:
SIENA: Semi-automatic semantic enhancement of datasets using concept recognition. J. Biomed. Semant. 12(1): 5 (2021) - [j89]Fadila Zerka, Visara Urovi, Fabio Bottari, Ralph T. H. Leijenaar, Sean Walsh, Hanif Gabrani-Juma, Martin Gueuning, Akshayaa Vaidyanathan, Wim Vos, Mariaelena Occhipinti, Henry C. Woodruff, Michel Dumontier, Philippe Lambin:
Privacy preserving distributed learning classifiers - Sequential learning with small sets of data. Comput. Biol. Medicine 136: 104716 (2021) - [j88]Chang Sun, Lianne Ippel, Andre Dekker, Michel Dumontier, Johan van Soest:
A systematic review on privacy-preserving distributed data mining. Data Sci. 4(2): 121-150 (2021) - [j87]Krist Shingjergji, Remzi Celebi, Jan C. Scholtes, Michel Dumontier:
Relation extraction from DailyMed structured product labels by optimally combining crowd, experts and machines. J. Biomed. Informatics 122: 103902 (2021) - [j86]Stuti Nayak, Amrapali Zaveri, Pedro Hernandez Serrano, Michel Dumontier:
Experience: Automated Prediction of Experimental Metadata from Scientific Publications. ACM J. Data Inf. Qual. 13(4): 21:1-21:11 (2021) - [j85]Tobias Kuhn, Ruben Taelman, Vincent Emonet, Haris Antonatos, Stian Soiland-Reyes, Michel Dumontier:
Semantic micro-contributions with decentralized nanopublication services. PeerJ Comput. Sci. 7: e387 (2021) - [c73]Núria Queralt-Rosinach, Mark D. Wilkinson, Rajaram Kaliyaperumal, César Henrique Bernabé, Qinqin Long, Michel Dumontier, Paul N. Schofield, Marco Roos:
Reuse of Design Pattern Measurements for Health Data. JOWO 2021 - [c72]Robin A. Richardson, Remzi Celebi, Sven van der Burg, Djura Smits, Lars Ridder, Michel Dumontier, Tobias Kuhn:
User-friendly Composition of FAIR Workflows in a Notebook Environment. K-CAP 2021: 1-8 - [d1]Chang Sun, Vincent Emonet, Michel Dumontier:
Comparison results of FAIR Evaluation tools. Zenodo, 2021
- [i25]Robin A. Richardson, Remzi Celebi, Sven van der Burg, Djura Smits, Lars Ridder, Michel Dumontier, Tobias Kuhn:
User-friendly Composition of FAIR Workflows in a Notebook Environment. CoRR abs/2111.00831 (2021) - 2020
- [j84]Fadila Zerka, Visara Urovi, Akshayaa Vaidyanathan, Samir Barakat, Ralph T. H. Leijenaar, Sean Walsh, Hanif Gabrani-Juma, Benjamin Miraglio, Henry C. Woodruff, Michel Dumontier, Philippe Lambin:
Blockchain for Privacy Preserving and Trustworthy Distributed Machine Learning in Multicentric Medical Imaging (C-DistriM). IEEE Access 8: 183939-183951 (2020) - [j83]Paul Groth, Michel Dumontier:
Introduction - FAIR data, systems and analysis. Data Sci. 3(1): 1-2 (2020) - [j82]Annika Jacobsen, Ricardo de Miranda Azevedo, Nick S. Juty, Dominique Batista, Simon J. Coles, Ronald Cornet, Mélanie Courtot, Mercè Crosas, Michel Dumontier, Chris T. A. Evelo, Carole A. Goble, Giancarlo Guizzardi, Karsten Kryger Hansen, Ali Hasnain, Kristina M. Hettne, Jaap Heringa, Rob W. W. Hooft, Melanie Imming, Keith G. Jeffery, Rajaram Kaliyaperumal, Martijn G. Kersloot, Christine R. Kirkpatrick, Tobias Kuhn, Ignasi Labastida, Barbara Magagna, Peter McQuilton, Natalie Meyers, Annalisa Montesanti, Mirjam van Reisen, Philippe Rocca-Serra, Robert Pergl, Susanna-Assunta Sansone, Luiz Olavo Bonino da Silva Santos, Juliane Schneider, George O. Strawn, Mark Thompson, Andra Waagmeester, Tobias Weigel, Mark D. Wilkinson, Egon L. Willighagen, Peter Wittenburg, Marco Roos, Barend Mons, Erik Schultes:
FAIR Principles: Interpretations and Implementation Considerations. Data Intell. 2(1-2): 10-29 (2020) - [j81]Oya Beyan, Ananya Choudhury, Johan van Soest, Oliver Kohlbacher, Lukas Zimmermann, Holger Stenzhorn, Md. Rezaul Karim, Michel Dumontier, Stefan Decker, Luiz Olavo Bonino da Silva Santos, Andre Dekker:
Distributed Analytics on Sensitive Medical Data: The Personal Health Train. Data Intell. 2(1-2): 96-107 (2020) - [j80]Ricardo de Miranda Azevedo, Michel Dumontier:
Considerations for the Conduction and Interpretation of FAIRness Evaluations. Data Intell. 2(1-2): 285-292 (2020) - [j79]Remzi Celebi, Joao Rebelo Moreira, Ahmed A. Hassan, Sandeep Ayyar, Lars Ridder, Tobias Kuhn, Michel Dumontier:
Towards FAIR protocols and workflows: the OpenPREDICT use case. PeerJ Comput. Sci. 6: e281 (2020) - [j78]Leyla J. García, Bérénice Batut, Melissa L. Burke, Mateusz Kuzak, Fotis E. Psomopoulos, Ricardo Arcila, Teresa K. Attwood, Niall Beard, Denise Carvalho-Silva, Alexandros C. Dimopoulos, Victoria Dominguez Del Angel, Michel Dumontier, Kim T. Gurwitz, Roland Krause, Peter McQuilton, Loredana Le Pera, Sarah L. Morgan, Päivi Rauste, Allegra Via, Pascal Kahlem, Gabriella Rustici, Celia W. G. van Gelder, Patricia M. Palagi:
Ten simple rules for making training materials FAIR. PLoS Comput. Biol. 16(5) (2020) - [c71]Michel Dumontier:
Accelerating Discovery Science with an Internet of FAIR Data and Services. CIKM 2020: 3 - [c70]Pedro V. Hernandez Serrano, Kody Moodley, Gijs van Dijck, Michel Dumontier:
Sleeping Beauties in Case Law. JURIX 2020: 231-234 - [e10]C. Maria Keet, Michel Dumontier:
Knowledge Engineering and Knowledge Management - 22nd International Conference, EKAW 2020, Bolzano, Italy, September 16-20, 2020, Proceedings. Lecture Notes in Computer Science 12387, Springer 2020, ISBN 978-3-030-61243-6 [contents] - [i24]Nacira Abbas, Kholoud Alghamdi, Mortaza Alinam, Francesca Alloatti, Glenda C. M. Amaral, Claudia d'Amato, Luigi Asprino, Martin Beno, Felix Bensmann, Russa Biswas, Ling Cai, Riley Capshaw, Valentina Anita Carriero, Irene Celino, Amine Dadoun, Stefano De Giorgis, Harm Delva, John Domingue, Michel Dumontier, Vincent Emonet, Marieke van Erp, Paola Espinoza-Arias, Omaima Fallatah, Sebastián Ferrada, Marc Gallofré Ocaña, Michalis Georgiou, Genet Asefa Gesese, Frances Gillis-Webber, Francesca Giovannetti, María Granados Buey, Ismail Harrando, Ivan Heibi, Vitor A. C. Horta, Laurine Huber, Federico Igne, Mohamad Yaser Jaradeh, Neha Keshan, Aneta Koleva, Bilal Koteich, Kabul Kurniawan, Mengya Liu, Chuangtao Ma, Lientje Maas, Martin Mansfield, Fabio Mariani, Eleonora Marzi, Sepideh Mesbah, Maheshkumar Mistry, Alba Catalina Morales Tirado, Anna Nguyen, Viet Bach Nguyen, Allard Oelen, Valentina Pasqual, Heiko Paulheim, Axel Polleres, Margherita Porena, Jan Portisch, Valentina Presutti, Kader Pustu-Iren, Ariam Rivas Mendez, Soheil Roshankish, Sebastian Rudolph, Harald Sack, Ahmad Sakor, Jaime Salas, Thomas Schleider, Meilin Shi, Gianmarco Spinaci, Chang Sun, Tabea Tietz, Molka Tounsi Dhouib, Alessandro Umbrico, Wouter van den Berg, Weiqin Xu:
Knowledge Graphs Evolution and Preservation - A Technical Report from ISWS 2019. CoRR abs/2012.11936 (2020) - [i23]Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi:
BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research 9: 136 (2020)
2010 – 2019
- 2019
- [j77]Shengtian Sang, Zhihao Yang, Xiaoxia Liu, Lei Wang, Hongfei Lin, Jian Wang, Michel Dumontier:
GrEDeL: A Knowledge Graph Embedding Based Method for Drug Discovery From Biomedical Literatures. IEEE Access 7: 8404-8415 (2019) - [j76]Remzi Celebi, Hüseyin Uyar, Erkan Yasar, Özgür Gümüs, Oguz Dikenelli, Michel Dumontier:
Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction in realistic settings. BMC Bioinform. 20(1): 726 (2019) - [j75]Amrapali Zaveri, Wei Hu, Michel Dumontier:
MetaCrowd: Crowdsourcing Biomedical Metadata Quality Assessment. Hum. Comput. 6: 98-112 (2019) - [c69]Tiffany I. Leung, Sima Pendharkar, Chwen-Yuen Angie Chen, Michel Dumontier:
Finding the evidence base using citation networks: Do 300 to 400 U.S. physicians die by suicide annually? AMIA 2019 - [c68]Kody Moodley, Pedro V. Hernandez Serrano, Gijs van Dijck, Michel Dumontier:
Similarity and Relevance of Court Decisions: A Computational Study on CJEU Cases. JURIX 2019: 63-72 - [c67]Chang Sun, Lianne Ippel, Johan van Soest, Birgit Wouters, Alexander Malic, Onaopepo Adekunle, Bob van den Berg, Ole Mussmann, Annemarie Koster, Carla van der Kallen, Claudia van Oppen, David Townend, Andre Dekker, Michel Dumontier:
A Privacy-Preserving Infrastructure for Analyzing Personal Health Data in a Vertically Partitioned Scenario. MedInfo 2019: 373-377 - [c66]Tiffany I. Leung, Michel Dumontier:
FAIR Principles for Clinical Practice Guidelines in a Learning Health System. MedInfo 2019: 1690-1691 - [c65]Jamie P. McCusker, Michel Dumontier, Shruthi Chari, Joanne S. Luciano, Deborah L. McGuinness:
A Linked Data Representation for Summary Statistics and Grouping Criteria. SAWSemStats@ISWC 2019 - [c64]Jamie P. McCusker, Michel Dumontier, Rui Yan, Sylvia He, Jonathan S. Dordick, Deborah L. McGuinness:
Reflections on: Finding Melanoma Drugs Through a Probabilistic Knowledge Graph. JT@ISWC 2019 - [c63]Johan van Soest, Ananya Choudhury, Nikhil Gaikwad, Matthijs Sloep, Michel Dumontier, Andre Dekker:
Annotation of Existing Databases using Semantic Web Technologies: Making Data more FAIR. SWAT4HCLS 2019: 94-101 - [c62]Chang Sun, Vincent Emonet, Johan van Soest, Annemarie Koster, Andre Dekker, Michel Dumontier:
Transformation and Integration of Heterogeneous Health Data in a Privacy-preserving Distributed Learning Infrastructure. SWAT4HCLS 2019: 141-142 - [e9]Ali Hasnain, Vít Novácek, Michel Dumontier, Dietrich Rebholz-Schuhmann:
Proceedings of the Workshop on Semantic Web Solutions for Large-Scale Biomedical Data Analytics co-located with 18th International Semantic Web Conference (ISWC 2019), Auckland, New Zealand, October 27th, 2019. CEUR Workshop Proceedings 2477, CEUR-WS.org 2019 [contents] - [i22]Nadine Havelange, Michel Dumontier, Birgit Wouters, Jona Linde, David Townend, Arno Riedl, Visara Urovi:
LUCE: A Blockchain Solution for monitoring data License accoUntability and CompliancE. CoRR abs/1908.02287 (2019) - [i21]Erik-Jan van Kesteren, Chang Sun, Daniel L. Oberski, Michel Dumontier, Lianne Ippel:
Privacy-Preserving Generalized Linear Models using Distributed Block Coordinate Descent. CoRR abs/1911.03183 (2019) - [i20]Remzi Celebi, Joao Rebelo Moreira, Ahmed A. Hassan, Sandeep Ayyar, Lars Ridder, Tobias Kuhn, Michel Dumontier:
Towards FAIR protocols and workflows: The OpenPREDICT case study. CoRR abs/1911.09531 (2019) - [i19]Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi:
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research 8: 1677 (2019) - 2018
- [j74]Yijia Zhang, Wei Zheng, Hongfei Lin, Jian Wang, Zhihao Yang, Michel Dumontier:
Drug-drug interaction extraction via hierarchical RNNs on sequence and shortest dependency paths. Bioinform. 34(5): 828-835 (2018) - [j73]Ruben Verborgh, Michel Dumontier:
A Web API Ecosystem through Feature-Based Reuse. IEEE Internet Comput. 22(3): 29-37 (2018) - [c61]Tobias Kuhn, Albert Meroño-Peñuela, Alexander Malic, Jorrit H. Poelen, Allen H. Hurlbert, Emilio Centeno Ortiz, Laura I. Furlong, Núria Queralt-Rosinach, Christine Chichester, Juan M. Banda, Egon L. Willighagen, Friederike Ehrhart, Chris T. A. Evelo, Tareq B. Malas, Michel Dumontier:
Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data. eScience 2018: 83-92 - [c60]Johan van Soest, Chang Sun, Ole Mussmann, Marco Puts, Bob van den Berg, Alexander Malic, Claudia van Oppen, David Townend, Andre Dekker, Michel Dumontier:
Using the Personal Health Train for Automated and Privacy-Preserving Analytics on Vertically Partitioned Data. MIE 2018: 581-585 - [c59]Remzi Çelebi, Erkan Yasar, Hüseyin Uyar, Özgür Gümüs, Oguz Dikenelli, Michel Dumontier:
Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction using Linked Open Data. SWAT4LS 2018 - [c58]Vincent Emonet, Amrapali Zaveri, Alexander Malic, Andreea Grigoriu, Michel Dumontier:
Data2Services: enabling automated conversion of data to services. SWAT4LS 2018 - [c57]Maxat Kulmanov, Senay Kafkas, Andreas Karwath, Alexander Malic, Georgios V. Gkoutos, Michel Dumontier, Robert Hoehndorf:
Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings. SWAT4LS 2018 - [c56]Kody Moodley, Amrapali Zaveri, Chunlei Wu, Michel Dumontier:
A model for capturing provenance of assertions about chemical substances. SWAT4LS 2018 - [c55]Amrapali Zaveri, Pedro Hernandez Serrano, Manisha Desai, Michel Dumontier:
CrowdED: Guideline for Optimal Crowdsourcing Experimental Design. WWW (Companion Volume) 2018: 1109-1116 - [e8]Daniel Garijo, Natalia Villanueva-Rosales, Tobias Kuhn, Tomi Kauppinen, Michel Dumontier:
Proceedings of the Second Workshop on Enabling Open Semantic Science co-located with 17th International Semantic Web Conference, SemSci@ISWC 2018, Monterey, California, USA, October 8-12th, 2018. CEUR Workshop Proceedings 2184, CEUR-WS.org 2018 [contents] - [i18]Tobias Kuhn, Albert Meroño-Peñuela, Alexander Malic, Jorrit H. Poelen, Allen H. Hurlbert, Emilio Centeno, Laura I. Furlong, Núria Queralt-Rosinach, Christine Chichester, Juan M. Banda, Egon L. Willighagen, Friederike Ehrhart, Chris T. A. Evelo, Tareq B. Malas, Michel Dumontier:
Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data. CoRR abs/1809.06532 (2018) - [i17]Chang Sun, Lianne Ippel, Birgit Wouters, Johan van Soest, Alexander Malic, Onaopepo Adekunle, Bob van den Berg, Marco Puts, Ole Mussmann, Annemarie Koster, Carla van der Kallen, David Townend, Andre Dekker, Michel Dumontier:
Analyzing Partitioned FAIR Health Data Responsibly. CoRR abs/1812.00991 (2018) - 2017
- [j72]Wei Hu, Honglei Qiu, Jiacheng Huang, Michel Dumontier:
BioSearch: a semantic search engine for Bio2RDF. Database J. Biol. Databases Curation 2017: bax059 (2017) - [j71]Richard D. Boyce, Erica A. Voss, Vojtech Huser, Lee Evans, Christian G. Reich, Jon D. Duke, Nicholas P. Tatonetti, Tal Lorberbaum, Michel Dumontier, Manfred Hauben, Magnus Wallberg, Lili Peng, Sara Dempster, Yongqun He, Anthony G. Sena, Vassilis Koutkias, Pantelis Natsiavas, Patrick B. Ryan:
Large-scale adverse effects related to treatment evidence standardization (LAERTES): an open scalable system for linking pharmacovigilance evidence sources with clinical data. J. Biomed. Semant. 8(1): 11:1-11:15 (2017) - [j70]Gabin Personeni, Emmanuel Bresso, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone, Adrien Coulet:
Discovering associations between adverse drug events using pattern structures and ontologies. J. Biomed. Semant. 8(1): 29:1-29:13 (2017) - [j69]Wei Hu, Amrapali Zaveri, Honglei Qiu, Michel Dumontier:
Cleaning by clustering: methodology for addressing data quality issues in biomedical metadata. BMC Bioinform. 18(1): 415:1-415:12 (2017) - [j68]Michel Dumontier, Tobias Kuhn:
Data Science - Methods, infrastructure, and applications. Data Sci. 1(1-2): 1-5 (2017) - [j67]Tobias Kuhn, Michel Dumontier:
Genuine semantic publishing. Data Sci. 1(1-2): 139-154 (2017) - [j66]Barend Mons, Cameron Neylon, Jan Velterop, Michel Dumontier, Luiz Olavo Bonino da Silva Santos, Mark D. Wilkinson:
Cloudy, increasingly FAIR; revisiting the FAIR Data guiding principles for the European Open Science Cloud. Inf. Serv. Use 37(1): 49-56 (2017) - [j65]