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2020 – today
- 2022
[j10]Amélie Barozet
, Kevin Molloy, Marc Vaisset, Christophe Zanon, Pierre Fauret, Thierry Siméon, Juan Cortés:
MoMA-LoopSampler: a web server to exhaustively sample protein loop conformations. Bioinform. 38(2): 552-553 (2022)- 2020
- [j9]Amélie Barozet, Kevin Molloy, Marc Vaisset, Thierry Siméon, Juan Cortés:
A reinforcement-learning-based approach to enhance exhaustive protein loop sampling. Bioinform. 36(4): 1099-1106 (2020) - [c15]Nathan Moore, Kevin Molloy, William Lovo, Sven Mayer, Pawel W. Wozniak, Michael Stewart:
POST: A Machine Learning Based Paper Organization and Scheduling Tool. GROUP (Companion) 2020: 135-138
2010 – 2019
- 2019
- [j8]Kevin Molloy, Laurent Denarie, Marc Vaisset, Thierry Siméon, Juan Cortés:
Simultaneous system design and path planning: A sampling-based algorithm. Int. J. Robotics Res. 38(2-3) (2019) - [c14]Daniel Veltri, Kevin Molloy:
Employing Deep Learning to Study Biomolecules. BCB 2019: 554 - [i1]Kevin Molloy, Erion Plaku, Amarda Shehu:
ROMEO: A Plug-and-play Software Platform of Robotics-inspired Algorithms for Modeling Biomolecular Structures and Motions. CoRR abs/1905.08331 (2019) - 2018
- [j7]Alejandro Estaña, Kevin Molloy, Marc Vaisset, Nathalie Sibille, Thierry Siméon, Pau Bernadó, Juan Cortés:
Hybrid parallelization of a multi-tree path search algorithm: Application to highly-flexible biomolecules. Parallel Comput. 77: 84-100 (2018) - [c13]Kevin Molloy, Nasrin Akhter, Amarda Shehu:
Modeling Macromolecular Structures and Motions: Computational Methods for Sampling and Analysis of Energy Landscapes. BCB 2018: 554 - [c12]Filip Jagodzinski, Brian Y. Chen, Kevin Molloy:
ACM-BCB 2018 Computational Structural Bioinformatics Workshop (CSBW) Chairs' Welcome. BCB 2018: 613-614 - 2017
- [c11]Kevin Molloy, David Morris, Amarda Shehu:
ACM-BCB '17 Tutorial: Robotics-inspired Algorithms for Modeling Protein Structures and Motions. BCB 2017: 628 - [c10]Nurit Haspel, Amarda Shehu, Kevin Molloy:
The 2017 Computational Structural Bioinformatics Workshop: CSBW 2017. BCB 2017: 643 - 2016
- [j6]Kevin Molloy, Rudy Clausen, Amarda Shehu:
A stochastic roadmap method to model protein structural transitions. Robotica 34(8): 1705-1733 (2016) - [c9]Laurent Denarie, Kevin Molloy, Marc Vaisset, Thierry Siméon, Juan Cortés:
Combining System Design and Path Planning. WAFR 2016: 112-127 - 2015
- [c8]Kevin Molloy, Amarda Shehu:
Interleaving Global and Local Search for Protein Motion Computation. ISBRA 2015: 175-186 - 2014
- [j5]Kevin Molloy, M. Jennifer Van, Daniel Barbará, Amarda Shehu:
Exploring representations of protein structure for automated remote homology detection and mapping of protein structure space. BMC Bioinform. 15(S-8): S4 (2014) - 2013
- [j4]Kevin Molloy, Sameh N. Saleh, Amarda Shehu:
Probabilistic Search and Energy Guidance for Biased Decoy Sampling in Ab Initio Protein Structure Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 10(5): 1162-1175 (2013) - [c7]Kevin Molloy, M. Jennifer Van, Daniel Barbará, Amarda Shehu:
Higher-order representations of protein structure space. ICCABS 2013: 1-2 - 2012
- [j3]Brian S. Olson, Irina Hashmi, Kevin Molloy, Amarda Shehu:
Basin Hopping as a General and Versatile Optimization Framework for the Characterization of Biological Macromolecules. Adv. Artif. Intell. 2012: 674832:1-674832:19 (2012) - [j2]Brian S. Olson, Kevin Molloy, S. Farid Hendi, Amarda Shehu:
Guiding Probabilistic Search of the protein conformational Space with Structural Profiles. J. Bioinform. Comput. Biol. 10(3) (2012) - [c6]Kevin Molloy, Amarda Shehu:
Biased decoy sampling to aid the selection of near-native protein conformations. BCB 2012: 131-138 - [c5]Kevin Molloy, Amarda Shehu:
A robotics-inspired method to sample conformational paths connecting known functionally-relevant structures in protein systems. BIBM Workshops 2012: 56-63 - [c4]Kevin Molloy, Amarda Shehu:
Mapping conformational pathways between known functional protein states. BIBM Workshops 2012: 971 - [c3]Kevin Molloy, Amarda Shehu:
A tree-based search to bias sampling of protein decoy conformations. BIBM Workshops 2012: 978 - 2011
- [j1]Brian S. Olson, Kevin Molloy, Amarda Shehu:
In Search of the protein Native State with a Probabilistic Sampling Approach. J. Bioinform. Comput. Biol. 9(3): 383-398 (2011) - [c2]Kevin Molloy, Amarda Shehu:
Assembly of low-energy protein conformations with heterogeneous fragments. BIBM Workshops 2011: 991-993 - 2010
- [c1]Brian S. Olson, Kevin Molloy, Amarda Shehu:
Enhancing Sampling of the Conformational Space Near the Protein Native State. BIONETICS 2010: 249-263
Coauthor Index
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