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Isabel Sá-Correia
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Journal Articles
- 2023
- [j12]Miguel Cacho Teixeira
, Romeu Viana, Margarida Palma, Jorge Oliveira, Mónica Galocha, Marta Neves Mota, Diogo Couceiro, Maria Galhardas Pereira, Miguel Antunes
, Inês V. Costa, Pedro Pais, Carolina Parada, Claudine Chaouiya
, Isabel Sá-Correia, Pedro Tiago Monteiro
:
YEASTRACT+: a portal for the exploitation of global transcription regulation and metabolic model data in yeast biotechnology and pathogenesis. Nucleic Acids Res. 51(D1): 785-791 (2023) - 2021
- [j11]Jorge Oliveira, Miguel Antunes
, Cláudia P. Godinho
, Miguel C. Teixeira
, Isabel Sá-Correia
, Pedro T. Monteiro
:
From a genome assembly to full regulatory network prediction: the case study of Rhodotorula toruloides putative Haa1-regulon. BMC Bioinform. 22(1): 399 (2021) - 2020
- [j10]Pedro T. Monteiro
, Jorge Oliveira, Pedro Pais
, Miguel Antunes
, Margarida Palma
, Mafalda Cavalheiro
, Mónica Galocha
, Cláudia P. Godinho
, Luís C. Martins
, Nuno Bourbon
, Marta Neves Mota
, Ricardo A. Ribeiro
, Romeu Viana
, Isabel Sá-Correia
, Miguel C. Teixeira
:
YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts. Nucleic Acids Res. 48(Database-Issue): D642-D649 (2020) - 2018
- [j9]Miguel C. Teixeira
, Pedro T. Monteiro
, Margarida Palma
, Catarina Costa, Cláudia P. Godinho
, Pedro Pais
, Mafalda Cavalheiro
, Miguel Antunes
, Alexandre Lemos
, Tiago Pedreira, Isabel Sá-Correia
:
YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae. Nucleic Acids Res. 46(Database-Issue): D348-D353 (2018) - 2017
- [j8]Pedro Tiago Monteiro
, Pedro Pais
, Catarina Costa
, Sauvagya Manna, Isabel Sá-Correia
, Miguel Cacho Teixeira
:
The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts. Nucleic Acids Res. 45(Database-Issue): D597-D603 (2017) - 2014
- [j7]Miguel Cacho Teixeira
, Pedro Tiago Monteiro
, Joana Fernandes Guerreiro, Joana Pinho Gonçalves
, Nuno Pereira Mira
, Sandra Costa dos Santos
, Tânia Rodrigues Cabrito, Margarida Palma
, Catarina Costa
, Alexandre Paulo Francisco
, Sara Cordeiro Madeira
, Arlindo Limede Oliveira
, Ana Teresa Freitas
, Isabel Sá-Correia
:
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae. Nucleic Acids Res. 42(Database-Issue): 161-166 (2014) - 2011
- [j6]Joana P. Gonçalves
, Alexandre P. Francisco
, Nuno P. Mira
, Miguel C. Teixeira
, Isabel Sá-Correia
, Arlindo L. Oliveira
, Sara C. Madeira
:
TFRank: network-based prioritization of regulatory associations underlying transcriptional responses. Bioinform. 27(22): 3149-3157 (2011) - [j5]Dário Abdulrehman, Pedro T. Monteiro
, Miguel C. Teixeira
, Nuno P. Mira
, Artur B. Lourenço
, Sandra Costa dos Santos
, Tânia Rodrigues Cabrito, Alexandre P. Francisco
, Sara C. Madeira
, Ricardo Santos Aires, Arlindo L. Oliveira
, Isabel Sá-Correia
, Ana T. Freitas
:
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface. Nucleic Acids Res. 39(Database-Issue): 136-140 (2011) - 2010
- [j4]Sara C. Madeira
, Miguel C. Teixeira
, Isabel Sá-Correia
, Arlindo L. Oliveira
:
Identification of Regulatory Modules in Time Series Gene Expression Data Using a Linear Time Biclustering Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. 7(1): 153-165 (2010) - 2008
- [j3]Pedro T. Monteiro
, Nuno D. Mendes
, Miguel C. Teixeira
, Sofia d'Orey, Sandra Tenreiro
, Nuno P. Mira
, Hélio Pais
, Alexandre P. Francisco
, Alexandra M. Carvalho
, Artur B. Lourenço
, Isabel Sá-Correia
, Arlindo L. Oliveira
, Ana T. Freitas
:
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae. Nucleic Acids Res. 36(Database-Issue): 132-136 (2008) - 2006
- [j2]Nuno D. Mendes
, Ana C. Casimiro, Pedro M. Santos
, Isabel Sá-Correia
, Arlindo L. Oliveira
, Ana T. Freitas
:
MUSA: a parameter free algorithm for the identification of biologically significant motifs. Bioinform. 22(24): 2996-3002 (2006) - [j1]Miguel C. Teixeira
, Pedro T. Monteiro
, Pooja Jain, Sandra Tenreiro
, Alexandra R. Fernandes
, Nuno P. Mira
, Marta Alenquer
, Ana T. Freitas
, Arlindo L. Oliveira, Isabel Sá-Correia
:
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae. Nucleic Acids Res. 34(Database-Issue): 446-451 (2006)
Coauthor Index
aka: Miguel Cacho Teixeira
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