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ORCIDStefano Beretta 0001
Person information
- affiliation: University of Milano-Bicocca, Department of Informatics, Systems and Communication (DISCo), Italy
Other persons with the same name
- Stefano Beretta 0002
![[0000-0002-0824-8348]](https://dblp.uni-trier.de/img/orcid-mark.12x12.png "0000-0002-0824-8348")
— Polytechnic University of Milan, Department of Mechanichal Engineering, Italy
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2020 – today
- 2023
[j16]Ivan Merelli, Stefano Beretta, Daniela Cesana, Alessandro Gennari, Fabrizio Benedicenti, Giulio Spinozzi, Daniele Cesini, Eugenio Montini, Daniele D'Agostino, Andrea Calabria:
InCliniGene enables high-throughput and comprehensive in vivo clonal tracking toward clinical genomics data integration. Database J. Biol. Databases Curation 2023 (2023)- 2020
- [j15]Andrea Calabria, Stefano Beretta, Ivan Merelli, Giulio Spinozzi, Stefano Brasca, Yuri Pirola, Fabrizio Benedicenti, Erika Tenderini, Paola Bonizzoni, Luciano Milanesi, Eugenio Montini:
γ-TRIS: a graph-algorithm for comprehensive identification of vector genomic insertion sites. Bioinform. 36(5): 1622-1624 (2020)
2010 – 2019
- 2019
- [j14]Raffaella Rizzi, Stefano Beretta, Murray Patterson, Yuri Pirola, Marco Previtali, Gianluca Della Vedova, Paola Bonizzoni:
Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era. Quant. Biol. 7(4): 278-292 (2019) - [c14]Valentina Giansanti, Mauro Castelli, Stefano Beretta, Ivan Merelli:
Comparing Deep and Machine Learning Approaches in Bioinformatics: A miRNA-Target Prediction Case Study. ICCS (3) 2019: 31-44 - [c13]Valentina Giansanti, Stefano Beretta, Daniele Cesini, Daniele D'Agostino, Ivan Merelli:
Parallel Computing in Deep Learning: Bioinformatics Case Studiesa. PDP 2019: 329-333 - [r3]Stefano Beretta:
Algorithms for Strings and Sequences: Pairwise Alignment. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 22-29 - [r2]Stefano Beretta, Luca Denti, Marco Previtali:
Graph Theory and Definitions. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 922-927 - [r1]Stefano Beretta, Luca Denti, Marco Previtali:
Network Properties. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 928-932 - 2018
- [j13]Stefano Beretta, Murray Patterson, Simone Zaccaria, Gianluca Della Vedova, Paola Bonizzoni:
HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads. BMC Bioinform. 19(1): 252:1-252:19 (2018) - [j12]Luca Denti, Raffaella Rizzi, Stefano Beretta, Gianluca Della Vedova, Marco Previtali, Paola Bonizzoni:
ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events. BMC Bioinform. 19(1): 444:1-444:21 (2018) - [j11]Stefano Beretta, Mauro Castelli, Ivo Gonçalves, Roberto Henriques, Daniele Ramazzotti:
Learning the Structure of Bayesian Networks: A Quantitative Assessment of the Effect of Different Algorithmic Schemes. Complex. 2018: 1591878:1-1591878:12 (2018) - [j10]Stefano Beretta, Mauro Castelli, Luis Muñoz, Leonardo Trujillo, Yuliana Martínez, Ales Popovic, Luciano Milanesi, Ivan Merelli:
A Scalable Genetic Programming Approach to Integrate miRNA-Target Predictions: Comparing Different Parallel Implementations of M3GP. Complex. 2018: 4963139:1-4963139:13 (2018) - [j9]Stefano Beretta, Mauro Castelli, Ivo Gonçalves, Ivan Kel, Valentina Giansanti, Ivan Merelli:
Improving eQTL Analysis Using a Machine Learning Approach for Data Integration: A Logistic Model Tree Solution. J. Comput. Biol. 25(10): 1091-1105 (2018) - [c12]Valentina Giansanti, Daniele D'Agostino, Carlo Maj, Stefano Beretta, Ivan Merelli:
Computing Empirical P-Values for Estimating Gene-Gene Interactions in Genome-Wide Association Studies: A Parallel Computing Approach. PDP 2018: 406-409 - 2017
- [j8]Giulio Spinozzi, Andrea Calabria, Stefano Brasca, Stefano Beretta, Ivan Merelli, Luciano Milanesi, Eugenio Montini:
VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites. BMC Bioinform. 18(1): 520:1-520:12 (2017) - [c11]Stefano Beretta, Paola Bonizzoni, Luca Denti, Marco Previtali, Raffaella Rizzi:
Mapping RNA-seq Data to a Transcript Graph via Approximate Pattern Matching to a Hypertext. AlCoB 2017: 49-61 - [c10]Stefano Beretta, Carlo Maj, Ivan Merelli:
Rank miRNA: a web tool for identifying polymorphisms altering miRNA target sites. ICCS 2017: 1125-1134 - [c9]Stefano Beretta, Lucia Morganti, Elena Corni, Andrea Ferraro, Daniele Cesini, Daniele D'Agostino, Luciano Milanesi, Ivan Merelli:
Low-Power Architectures for miRNA-Target Genome Wide Analysis. PDP 2017: 309-312 - [i5]Stefano Beretta, Mauro Castelli, Ivo Gonçalves, Ivan Merelli, Daniele Ramazzotti:
Combining Bayesian Approaches and Evolutionary Techniques for the Inference of Breast Cancer Networks. CoRR abs/1703.03041 (2017) - [i4]Stefano Beretta, Mauro Castelli, Ivo Gonçalves, Daniele Ramazzotti:
A quantitative assessment of the effect of different algorithmic schemes to the task of learning the structure of Bayesian Networks. CoRR abs/1704.08676 (2017) - 2016
- [j7]Stefano Beretta, Mauro Castelli, Riccardo Dondi:
Parameterized tractability of the maximum-duo preservation string mapping problem. Theor. Comput. Sci. 646: 16-25 (2016) - [j6]Stefano Beretta, Mauro Castelli, Riccardo Dondi:
Corrigendum to "Parameterized tractability of the maximum-duo preservation string mapping problem" [Theoret. Comput. Sci. 646(2016) 16-25]. Theor. Comput. Sci. 653: 108-110 (2016) - [c8]Stefano Beretta, Mario Cannataro, Mauro Castelli:
9th Workshop on Biomedical and Bioinformatics Challenges for Computer Science - BBC2016. ICCS 2016: 962-964 - [c7]Stefano Beretta, Mauro Castelli, Ivo Gonçalves, Ivan Merelli, Daniele Ramazzotti:
Combining Bayesian Approaches and Evolutionary Techniques for the Inference of Breast Cancer Networks. IJCCI (ECTA) 2016: 217-224 - [c6]Stefano Beretta, Mauro Castelli, Yuliana Martínez, Luis Muñoz, Sara Silva, Leonardo Trujillo, Luciano Milanesi, Ivan Merelli:
A Machine Learning Approach for the Integration of miRNA-Target Predictions. PDP 2016: 528-534 - 2015
- [j5]Niko Beerenwinkel, Stefano Beretta, Paola Bonizzoni, Riccardo Dondi, Yuri Pirola:
Covering Pairs in Directed Acyclic Graphs. Comput. J. 58(7): 1673-1686 (2015) - [j4]Stefano Beretta, Mauro Castelli, Riccardo Dondi:
Correcting gene tree by removal and modification: Tractability and approximability. J. Discrete Algorithms 33: 115-129 (2015) - [c5]Stefano Beretta, Mario Cannataro, Riccardo Dondi:
8th Workshop on Biomedical and Bioinformatics Challenges for Computer Science - BBC2015. ICCS 2015: 680-682 - [c4]Stefano Beretta, Riccardo Dondi:
Correcting Gene Trees by Leaf Insertions: Complexity and Approximation. ICTCS 2015: 35-50 - [i3]Stefano Beretta, Mauro Castelli, Riccardo Dondi:
Parameterized Tractability of the Maximum-Duo Preservation String Mapping Problem. CoRR abs/1512.03220 (2015) - 2014
- [j3]Daniel Alonso-Alemany, Aurélien Barré, Stefano Beretta, Paola Bonizzoni, Macha Nikolski, Gabriel Valiente:
Further Steps in TANGO: improved taxonomic assignment in metagenomics. Bioinform. 30(1): 17-23 (2014) - [j2]Stefano Beretta, Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Raffaella Rizzi:
Modeling Alternative Splicing Variants from RNA-Seq Data with Isoform Graphs. J. Comput. Biol. 21(1): 16-40 (2014) - [c3]Stefano Beretta, Riccardo Dondi:
Gene Tree Correction by Leaf Removal and Modification: Tractability and Approximability. CiE 2014: 42-52 - [c2]Niko Beerenwinkel, Stefano Beretta, Paola Bonizzoni, Riccardo Dondi, Yuri Pirola:
Covering Pairs in Directed Acyclic Graphs. LATA 2014: 126-137 - 2013
- [j1]Mauro Castelli, Stefano Beretta, Leonardo Vanneschi:
A hybrid genetic algorithm for the repetition free longest common subsequence problem. Oper. Res. Lett. 41(6): 644-649 (2013) - [i2]Niko Beerenwinkel, Stefano Beretta, Paola Bonizzoni, Riccardo Dondi, Yuri Pirola:
Covering Pairs in Directed Acyclic Graphs. CoRR abs/1310.5037 (2013) - 2012
- [c1]Stefano Beretta, Paola Bonizzoni, Raffaella Rizzi, Gianluca Della Vedova:
Reconstructing isoform graphs from RNA-Seq data. BIBM 2012: 1-4 - 2011
- [i1]Stefano Beretta, Paola Bonizzoni, Gianluca Della Vedova, Raffaella Rizzi:
Predicting Variants of Alternative Splicing from NGS data without the Genome. CoRR abs/1108.0047 (2011)
Coauthor Index
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