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Books and Theses
- 2004
[b1]Age K. Smilde, Rasmus Bro, Paul Geladi:
Multi-way Analysis with Applications in the Chemical Sciences. Wiley 2004, ISBN 978-0-471-98691-1, pp. I-XIV, 1-381
Journal Articles
- 2024
- [j29]Lu Li, Shi Yan, Barbara M. Bakker, Huub C. J. Hoefsloot, Bo Chawes, David Horner, Morten A. Rasmussen
, Age K. Smilde, Evrim Acar:
Analyzing postprandial metabolomics data using multiway models: a simulation study. BMC Bioinform. 25(1): 94 (2024) - 2023
- [j28]Balázs Erdos, Johan A. Westerhuis, Michiel E. Adriaens, Shauna D. O'Donovan, Ren Xie, Cécile M. Singh-Povel, Age K. Smilde, Ilja C. W. Arts:
Analysis of high-dimensional metabolomics data with complex temporal dynamics using RM-ASCA+. PLoS Comput. Biol. 19(6) (2023) - [j27]Florian Becker, Age K. Smilde, Evrim Acar:
Unsupervised EHR-based phenotyping via matrix and tensor decompositions. WIREs Data. Mining. Knowl. Discov. 13(4) (2023) - 2022
- [j26]Lu Li, Huub C. J. Hoefsloot, Albert A. de Graaf, Evrim Acar, Age K. Smilde:
Exploring dynamic metabolomics data with multiway data analysis: a simulation study. BMC Bioinform. 23(1): 31 (2022) - 2021
- [j25]Torfinn S. Madssen, Guro F. Giskeødegård, Age K. Smilde, Johan A. Westerhuis:
Repeated measures ASCA+ for analysis of longitudinal intervention studies with multivariate outcome data. PLoS Comput. Biol. 17(11) (2021) - 2020
- [j24]Frans M. van der Kloet, Jeroen Buurmans, Martijs J. Jonker, Age K. Smilde, Johan A. Westerhuis:
Increased comparability between RNA-Seq and microarray data by utilization of gene sets. PLoS Comput. Biol. 16(9) (2020) - 2019
- [j23]Yipeng Song, Johan A. Westerhuis, Nanne Aben, Magali Michaut, Lodewyk F. A. Wessels, Age K. Smilde:
Principal component analysis of binary genomics data. Briefings Bioinform. 20(1): 317-329 (2019) - 2018
- [j22]Nanne Aben, Johan A. Westerhuis, Yipeng Song, Henk A. L. Kiers, Magali Michaut, Age K. Smilde, Lodewyk F. A. Wessels:
iTOP: inferring the topology of omics data. Bioinform. 34(17): i988-i996 (2018) - [j21]Abel Folch-Fortuny, Bas Teusink, Huub C. J. Hoefsloot, Age K. Smilde, Alberto Ferrer:
Dynamic elementary mode modelling of non-steady state flux data. BMC Syst. Biol. 12(1): 71:1-71:15 (2018) - 2016
- [j20]Frans M. van der Kloet, Patricia Sebastián-León, Ana Conesa, Age K. Smilde, Johan A. Westerhuis:
Separating common from distinctive variation. BMC Bioinform. 17(S-5): S195 (2016) - 2015
- [j19]Dicle Hasdemir, Huub C. J. Hoefsloot, Age K. Smilde:
Validation and selection of ODE based systems biology models: how to arrive at more reliable decisions. BMC Syst. Biol. 9: 32 (2015) - [j18]Polina Reshetova, Age K. Smilde, Johan A. Westerhuis, Antoine H. C. van Kampen:
Using Petri nets for experimental design in a multi-organ elimination pathway. Comput. Biol. Medicine 63: 19-27 (2015) - [j17]Evrim Acar, Rasmus Bro, Age K. Smilde:
Data Fusion in Metabolomics Using Coupled Matrix and Tensor Factorizations. Proc. IEEE 103(9): 1602-1620 (2015) - 2014
- [j16]Dicle Hasdemir, Huub C. J. Hoefsloot, Johan A. Westerhuis, Age K. Smilde:
How informative is your kinetic model?: using resampling methods for model invalidation. BMC Syst. Biol. 8: 61 (2014) - [j15]Polina Reshetova, Age K. Smilde, Antoine H. C. van Kampen, Johan A. Westerhuis:
Use of prior knowledge for the analysis of high-throughput transcriptomics and metabolomics data. BMC Syst. Biol. 8(S-2): S2 (2014) - 2012
- [j14]Age K. Smilde, Marieke E. Timmerman, Margriet M. W. B. Hendriks, Jeroen J. Jansen, Huub C. J. Hoefsloot:
Generic framework for high-dimensional fixed-effects ANOVA. Briefings Bioinform. 13(5): 524-535 (2012) - 2011
- [j13]Cheng-Jian Xu, Huub C. J. Hoefsloot, Age K. Smilde:
To aggregate or not to aggregate high-dimensional classifiers. BMC Bioinform. 12: 153 (2011) - 2009
- [j12]Age K. Smilde, Henk A. L. Kiers, S. Bijlsma, C. M. Rubingh, M. J. van Erk:
Matrix correlations for high-dimensional data: the modified RV-coefficient. Bioinform. 25(3): 401-405 (2009) - [j11]Robert A. van den Berg, Iven Van Mechelen, Tom F. Wilderjans, Katrijn Van Deun, Henk A. L. Kiers, Age K. Smilde:
Integrating functional genomics data using maximum likelihood based simultaneous component analysis. BMC Bioinform. 10: 340 (2009) - [j10]Katrijn Van Deun, Age K. Smilde, Mariët J. van der Werf, Henk A. L. Kiers, Iven Van Mechelen:
A structured overview of simultaneous component based data integration. BMC Bioinform. 10 (2009) - [j9]Jeroen J. Jansen, Nicole M. van Dam, Huub C. J. Hoefsloot, Age K. Smilde:
Crossfit analysis: a novel method to characterize the dynamics of induced plant responses. BMC Bioinform. 10: 425 (2009) - [j8]Uwe Thissen, Suzan Wopereis, Sjoerd A. A. van den Berg, Ivana Bobeldijk, Robert Kleemann, Teake Kooistra, Ko Willems van Dijk, Ben van Ommen, Age K. Smilde:
Improving the analysis of designed studies by combining statistical modelling with study design information. BMC Bioinform. 10 (2009) - 2007
- [j7]María José Nueda, Ana Conesa, Johan A. Westerhuis, Huub C. J. Hoefsloot, Age K. Smilde, Manuel Talón, Alberto Ferrer:
Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA. Bioinform. 23(14): 1792-1800 (2007) - [j6]Daniel J. Vis, Johan A. Westerhuis, Age K. Smilde, Jan van der Greef:
Statistical validation of megavariate effects in ASCA. BMC Bioinform. 8 (2007) - [j5]Henk A. L. Kiers, Age K. Smilde:
A comparison of various methods for multivariate regression with highly collinear variables. Stat. Methods Appl. 16(2): 193-228 (2007) - 2006
- [j4]Henk-Jan Ramaker, Eric N. M. van Sprang, Johan A. Westerhuis, Age K. Smilde:
Single channel event (SCE) for managing sensor failures in MSPC. Comput. Chem. Eng. 30(6-7): 961-969 (2006) - 2005
- [j3]Age K. Smilde, Jeroen J. Jansen, Huub C. J. Hoefsloot, Robert-Jan A. N. Lamers, Jan van der Greef, Marieke E. Timmerman:
ANOVA-simultaneous component analysis (ASCA): a new tool for analyzing designed metabolomics data. Bioinform. 21(13): 3043-3048 (2005) - 2004
- [j2]Jeroen J. Jansen, Huub C. J. Hoefsloot, Hans F. M. Boelens, Jan van der Greef, Age K. Smilde:
Analysis of longitudinal metabolomics data. Bioinform. 20(15): 2438-2446 (2004) - 1998
- [j1]Jonas Nilsson, Evert J. Homan, Age K. Smilde, Cor J. Grol, Håkan Wikstrüm:
A multiway 3D QSAR analysis of a series of (S)-N-[(1-ethyl-2-pyrrolidinyl)methyl]-6-methoxybenzamides. J. Comput. Aided Mol. Des. 12(1): 81-93 (1998)
Conference and Workshop Papers
- 2022
- [c1]Florian Becker, Mari Nygård, Jan Nygård, Age K. Smilde, Evrim Acar:
Phenotyping of Cervical Cancer Risk Groups via Generalized Low-Rank Models Using Medical Questionnaires. NAIS 2022: 94-110
Informal and Other Publications
- 2022
- [i2]Florian Becker, Age K. Smilde, Evrim Acar:
Unsupervised EHR-based Phenotyping via Matrix and Tensor Decompositions. CoRR abs/2209.00322 (2022) - 2019
- [i1]J. Camacho, Age K. Smilde, Edoardo Saccenti, Johan A. Westerhuis:
All Sparse PCA Models Are Wrong, But Some Are Useful. Part I: Computation of Scores, Residuals and Explained Variance. CoRR abs/1907.03989 (2019)
Coauthor Index
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