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Dirk Drasdo
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Journal Articles
- 2023
- [j15]Irene E. Vignon-Clementel, Nick Jagiella, Jules Dichamp, Jérôme Kowalski, Wiltrud Lederle, Hendrik Laue, Fabian Kiessling
, Oliver Sedlaczek, Dirk Drasdo:
A proof-of-concept pipeline to guide evaluation of tumor tissue perfusion by dynamic contrast-agent imaging: Direct simulation and inverse tracer-kinetic procedures. Frontiers Bioinform. 3 (2023) - 2022
- [j14]Adrian Friebel, Tim Johann
, Dirk Drasdo, Stefan Hoehme
:
Guided interactive image segmentation using machine learning and color-based image set clustering. Bioinform. 38(19): 4622-4628 (2022) - [j13]Paul Van Liedekerke
, Lila Gannoun
, Axelle Loriot, Tim Johann
, Frédéric Lemaigre
, Dirk Drasdo
:
Quantitative modeling identifies critical cell mechanics driving bile duct lumen formation. PLoS Comput. Biol. 18(2) (2022) - 2019
- [j12]Paul Van Liedekerke
, Johannes Neitsch, Tim Johann
, Kevin Alessandri, Pierre Nassoy
, Dirk Drasdo
:
Quantitative cell-based model predicts mechanical stress response of growing tumor spheroids over various growth conditions and cell lines. PLoS Comput. Biol. 15(3) (2019) - 2018
- [j11]Yi Yin
, Oliver Sedlaczek, Benedikt Müller, Arne Warth, Margarita Gonzalez-Vallinas
, Bernd Lahrmann, Niels Grabe
, Hans-Ulrich Kauczor, Kai Breuhahn
, Irene E. Vignon-Clementel, Dirk Drasdo:
Tumor Cell Load and Heterogeneity Estimation From Diffusion-Weighted MRI Calibrated With Histological Data: an Example From Lung Cancer. IEEE Trans. Medical Imaging 37(1): 35-46 (2018) - 2016
- [j10]Nick Jagiella, Benedikt Müller, Margareta Müller, Irene E. Vignon-Clementel, Dirk Drasdo:
Inferring Growth Control Mechanisms in Growing Multi-cellular Spheroids of NSCLC Cells from Spatial-Temporal Image Data. PLoS Comput. Biol. 12(2) (2016) - 2015
- [j9]Adrian Friebel, Johannes Neitsch, Tim Johann
, Seddik Hammad
, Jan G. Hengstler
, Dirk Drasdo, Stefan Hoehme:
TiQuant: software for tissue analysis, quantification and surface reconstruction. Bioinform. 31(19): 3234-3236 (2015) - 2014
- [j8]François Bertaux
, Szymon Stoma, Dirk Drasdo, Grégory Batt:
Modeling Dynamics of Cell-to-Cell Variability in TRAIL-Induced Apoptosis Explains Fractional Killing and Predicts Reversible Resistance. PLoS Comput. Biol. 10(10) (2014) - 2010
- [j7]Stefan Hoehme, Dirk Drasdo:
A cell-based simulation software for multi-cellular systems. Bioinform. 26(20): 2641-2642 (2010) - [j6]Axel Krinner, Martin Hoffmann, Markus Loeffler, Dirk Drasdo, Jörg Galle:
Individual fates of mesenchymal stem cells in vitro. BMC Syst. Biol. 4: 73 (2010) - [j5]Stefan Hoehme, Marc Brulport, Alexander Bauer, Essam Bedawy
, Wiebke Schormann, Matthias Hermes, Verena Puppe, Rolf Gebhardt, Sebastian Zellmer, Michael Schwarz, Ernesto Bockamp
, Tobias Timmel, Jan G. Hengstler
, Dirk Drasdo:
Prediction and validation of cell alignment along microvessels as order principle to restore tissue architecture in liver regeneration. Proc. Natl. Acad. Sci. USA 107(23): 10371-10376 (2010) - 2006
- [j4]Kristin Missal, Michael A. Cross
, Dirk Drasdo:
Gene network inference from incomplete expression data: transcriptional control of hematopoietic commitment. Bioinform. 22(6): 731-738 (2006) - 2005
- [j3]Dirk Drasdo, Matthias Kruspe:
Emergence of Regulatory Networks in Simulated Evolutionary Processes. Adv. Complex Syst. 8(2-3): 285-318 (2005) - [j2]Dirk Drasdo:
Coarse Graining in Simulated Cell Populations. Adv. Complex Syst. 8(2-3): 319-363 (2005) - 2000
- [j1]Dirk Drasdo, Terence Hwa
, Michael Lässig:
Scaling Laws and Similarity Detection in Sequence Alignment with Gaps. J. Comput. Biol. 7(1-2): 115-141 (2000)
Conference and Workshop Papers
- 2019
- [c3]Yi Yin
, Stéphanie Prigent, Joan Torrent
, Human Rezaei, Dirk Drasdo, Marie Doumic
:
Automated Quantification of Amyloid Fibrils Morphological Features by Image Processing Techniques. ISBI 2019: 534-537 - 2003
- [c2]Jörg Galle, Markus Loeffler, Dirk Drasdo:
An individual cell-based model of the growth regulation of epithelial cell-populations in-vitro. German Conference on Bioinformatics 2003: 47-51 - 1998
- [c1]Dirk Drasdo, Terence Hwa, Michael Lässig:
A Statistical Theory of Sequence Alignment with Gaps. ISMB 1998: 52-58
Informal and Other Publications
- 2020
- [i2]Adrian Friebel, Tim Johann, Dirk Drasdo, Stefan Hoehme:
Guided interactive image segmentation using machine learning and color based data set clustering. CoRR abs/2005.07662 (2020) - 2014
- [i1]Adrian Friebel, Johannes Neitsch, Tim Johann, Seddik Hammad, Jan G. Hengstler, Dirk Drasdo, Stefan Hoehme:
TiQuant: Software for tissue analysis, quantification and surface reconstruction. CoRR abs/1410.4598 (2014)
Coauthor Index
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