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2020 – today
- 2024
[c26]Dehui Kong
, Hongyue Wang, Sijie Zhou, Hong Cui, Zhiquan Feng:
PenLab: Towards Understanding of Active Collaboration for Solid Geometry Teaching. CHI Extended Abstracts 2024: 264:1-264:7- 2023
- [j22]Hong Cui, Zhiquan Feng, Jinglan Tian, Dehui Kong, Zishuo Xia, Weina Li:
MAG: a smart gloves system based on multimodal fusion perception. CCF Trans. Pervasive Comput. Interact. 5(4): 411-429 (2023) - [c25]Hong Cui, Noah Giebink, Julian R. Starr, Dylan Longert, Bruce Ford, Étienne Léveillé-Bourret:
From Noisy Data to Useful Color Palettes: One Step in Making Biodiversity Data FAIR. iConference (1) 2023: 469-481 - 2022
- [j21]Hong Cui, Bruce Ford, Julian R. Starr, Anton Reznicek, Limin Zhang, James A. Macklin:
Authors' attitude toward adopting a new workflow to improve the computability of phenotype publications. Database J. Biol. Databases Curation 2022(2022) (2022) - 2021
- [j20]Limin Zhang, Xingyi Yang, Zuleima Cota, Hong Cui, Bruce Ford, Hsin-liang Oliver Chen, James A. Macklin, Anton Reznicek, Julian R. Starr:
Which methods are the most effective in enabling novice users to participate in ontology creation? A usability study. Database J. Biol. Databases Curation 2021 (2021) - [j19]Xiangfeng Jin, Haiqing Zhou, Jianfang Song, Hong Cui, Yiren Luo, Haiping Jiang:
P3H4 Overexpression Serves as a Prognostic Factor in Lung Adenocarcinoma. Comput. Math. Methods Medicine 2021: 9971353:1-9971353:9 (2021) - [c24]Sebastian Deimen, Hong Cui, Michelle Higgins:
A Peek into the US Informal STEM Landscape through Theconnectory.org. ASIST 2021: 700-702 - [c23]Stephen M. Richard, David Vieglais, Hong Cui, Neil Davies, John Deck, Quan Gan, Eric C. Kansa, Sarah Whitcher Kansa, John A. Kunze, Danny Mandel, Christopher Meyer, Thomas Orrell, Sarah Ramdeen, Rebecca Snyder, Ramona L. Walls, Yuxuan Zhou, Kerstin A. Lehnert:
Internet of Samples. ASIST 2021: 813-815 - 2020
- [j18]Fei Yu, Laura Ruel, Ryan Tyler, Qian Xu, Hong Cui, Stan Karanasios, Ba Xuan Nguyen, Anna Keilbach, Javed Mostafa:
Innovative UX Methods for Information Access Based on Interdisciplinary Approaches: Practical Lessons from Academia and Industry. Data Inf. Manag. 4(1): 74-80 (2020) - [c22]Limin Zhang, Hong Cui, Bruce Ford, Hsin-liang Cheng, James A. Macklin, Anton Reznicek, Julian R. Starr:
Enabling Authors to Produce Computable Phenotype Measurements: Usability Studies on the Measurement Recorder. HCI (48) 2020: 288-296
2010 – 2019
- 2019
- [c21]Limin Zhang, Zuleima Cota, Hong Cui, Hsin-liang Oliver Chen, Bruce Ford, Joel Sach, Jocelyn E. Pender, James A. Macklin, Anton Reznicek, Julian R. Starr:
Developing community phenotype ontologies: Understanding users' preferences. ASIST 2019: 838-840 - 2018
- [j17]Wasila M. Dahdul, Prashanti Manda, Hong Cui, James P. Balhoff, T. Alexander Dececchi, Nizar Ibrahim, Hilmar Lapp, Todd J. Vision, Paula M. Mabee:
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems. Database J. Biol. Databases Curation 2018: bay110 (2018) - [j16]Jin Mao, Hong Cui:
Identifying bacterial biotope entities using sequence labeling: Performance and feature analysis. J. Assoc. Inf. Sci. Technol. 69(9): 1134-1147 (2018) - [c20]Yanjun Zhang, Robert E. Mercer, Jacquelyn A. Burkell, Hong Cui:
Using Shallow Semantic Analysis to Implement Automated Quality Assessment of Web Health Care Information. CICLing (2) 2018: 17-31 - [c19]Lorena Endara, J. Gordon Burleigh, Laurel Cooper, Pankaj Jaiswal, Marie-Angélique Laporte, Hong Cui:
A Natural Language Processing Pipeline to Extract Phenotypic Data from Formal Taxonomic Descriptions with a Focus on Flagellate Plants. ICBO 2018 - [c18]Vikas Yadav, Farig Sadeque, P. Bryan Heidorn, Hong Cui:
Where Are iSchools Heading? iConference 2018: 665-670 - [p1]Carrine E. Blank, Hong Cui, Jin Mao, Lisa R. Moore, Robert W. Thacker, Ramona L. Walls:
Accelerating the Large-Scale Study of Prokaryotic Phenotypes and Niche Space Evolution Through Time Using the MicrO Ontology, MicroPIE, and MicroPIEDigester Software. Application of Semantic Technology in Biodiversity Science 2018: 151-185 - 2016
- [j15]Carrine E. Blank, Hong Cui, Lisa R. Moore, Ramona L. Walls:
MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions. J. Biomed. Semant. 7: 18 (2016) - [j14]Hong Cui, Dongfang Xu, Steven S. Chong, Martin Ramirez, Thomas Rodenhausen, James A. Macklin, Bertram Ludäscher, Robert A. Morris, Eduardo M. Soto, Nicolás Mongiardino Koch:
Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building. BMC Bioinform. 17: 471:1-471:22 (2016) - [j13]Jin Mao, Lisa R. Moore, Carrine E. Blank, Elvis Hsin-Hui Wu, Marcia Ackerman, Sonali Ranade, Hong Cui:
Microbial phenomics information extractor (MicroPIE): a natural language processing tool for the automated acquisition of prokaryotic phenotypic characters from text sources. BMC Bioinform. 17: 528:1-528:16 (2016) - [c17]Dang Tuan Nhon, Hong Cui, Angus G. Forbes:
MultiLayerMatrix: Visualizing Large Taxonomic Datasets. EuroVA@EuroVis 2016: 55-59 - 2015
- [j12]Fengqiong Huang, James A. Macklin, Hong Cui, Heather A. Cole, Lorena Endara:
OTO: Ontology Term Organizer. BMC Bioinform. 16: 47:1-47:18 (2015) - [c16]Hong Cui, Wasila M. Dahdul, T. Alexander Dececchi, Nizar Ibrahim, Paula M. Mabee, James P. Balhoff, Hariharan Gopalakrishnan:
CharaParser+EQ: Performance evaluation without gold standard. ASIST 2015: 1-10 - 2014
- [j11]Wasila M. Dahdul, Hong Cui, Paula M. Mabee, Christopher J. Mungall, David Osumi-Sutherland, Ramona L. Walls, Melissa A. Haendel:
Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology. J. Biomed. Semant. 5: 34 (2014) - 2013
- [j10]Cecilia N. Arighi, Ben Carterette, K. Bretonnel Cohen, Martin Krallinger, W. John Wilbur, Petra Fey, Robert J. Dodson, Laurel Cooper, Ceri E. Van Slyke, Wasila M. Dahdul, Paula M. Mabee, Donghui Li, Bethany R. Harris, Marc Gillespie, Silvia Jimenez, Phoebe M. Roberts, Lisa Matthews, Kevin G. Becker, Harold J. Drabkin, Susan M. Bello, Luana Licata, Andrew Chatr-aryamontri, Mary L. Schaeffer, Julie Park, Melissa A. Haendel, Kimberly Van Auken, Yuling Li, Juancarlos Chan, Hans-Michael Müller, Hong Cui, James P. Balhoff, Chi-Yang Wu, Zhiyong Lu, Chih-Hsuan Wei, Catalina O. Tudor, Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan, Juan Miguel Cejuela, Pratibha Dubey, Cathy H. Wu:
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database J. Biol. Databases Curation 2013 (2013) - 2012
- [j9]Anne E. Thessen, Hong Cui, Dmitry Mozzherin:
Applications of Natural Language Processing in Biodiversity Science. Adv. Bioinformatics 2012: 391574:1-391574:17 (2012) - [j8]Hong Cui:
CharaParser for fine-grained semantic annotation of organism morphological descriptions. J. Assoc. Inf. Sci. Technol. 63(4): 738-754 (2012) - [c15]Fengqiong Huang, James A. Macklin, Paul J. Morris, Partha Pratim Sanyal, Robert A. Morris, Hong Cui:
OTO: Ontology term organizer. ASIST 2012: 1-3 - [c14]Ramona L. Walls, Hong Cui, James A. Macklin, Chris Mungall, Laurel Cooper, Dennis W. Stevenson, Pankaj Jaiswal:
Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resources. ICBO 2012 - [c13]Alyssa Janning, Hong Cui:
Evaluating the botanical coverage of PATO using an unsupervised learning algorithm. iConference 2012: 504-505 - 2011
- [c12]Hong Cui, Sriramu Singaram, Alyssa Janning:
Combine unsupervised learning and heuristic rules to annotate organism morphological descriptions. ASIST 2011: 1-9 - 2010
- [j7]Hong Cui:
Semantic annotation of morphological descriptions: an overall strategy. BMC Bioinform. 11: 278 (2010) - [j6]Hong Cui, David Boufford, Paul Selden:
Semantic annotation of biosystematics literature without training examples. J. Assoc. Inf. Sci. Technol. 61(3): 522-542 (2010) - [j5]Hong Cui:
Competency evaluation of plant character ontologies against domain literature. J. Assoc. Inf. Sci. Technol. 61(6): 1144-1165 (2010) - [c11]Hong Cui:
Unsupervised extraction of text segments from heterogeneous document collections. ASIST 2010: 1-2 - [c10]Hong Cui, Kenneth (Yang) Jiang, Partha Pratim Sanyal:
From text to RDF triple store: An application for biodiversity literature. ASIST 2010: 1-2 - [c9]Hong Cui, Partha Pratim Sanyal, Chunshui Yu:
Tools for Semantic Annotation of Taxonomic Descriptions. KES (4) 2010: 506-516
2000 – 2009
- 2009
- [j4]Hong Cui:
An Application for Semantic Markup of Biodiversity Documents. Bull. IEEE Tech. Comm. Digit. Libr. 5(1) (2009) - [c8]Hong Cui, Chunshui Yu, James A. Macklin:
Application of semantic annotation for quality insurance in biosystematics publishing. ASIST 2009: 1-6 - [c7]Yisong Chen, Hong Cui:
Intelligent feature extraction and knowledge mining by multivariate analyses. CIDM 2009: 33-39 - 2008
- [c6]Hong Cui:
Unsupervised semantic markup of literature for biodiversity digital libraries. JCDL 2008: 25-28 - [c5]Hong Cui:
An application for semantic markup of biodiversity documents. JCDL 2008: 421 - 2007
- [j3]Hong Cui, P. Bryan Heidorn:
The reusability of induced knowledge for the automatic semantic markup of taxonomic descriptions. J. Assoc. Inf. Sci. Technol. 58(1): 133-149 (2007) - [j2]Hong Cui, Richard M. McCourt, Monique Feist:
Unsupervised Structure Discovery for Biodiversity Information. Bull. IEEE Tech. Comm. Digit. Libr. 3(2) (2007) - 2006
- [c4]Hong Cui, Richard M. McCourt, Monique Feist:
Automated concept discovery in corpora of morphological descriptions. ASIST 2006: 1-5 - [c3]Hong Cui, Richard M. McCourt, Monique Feist:
Unsupervised structure discovery for biodiversity information. JCDL 2006: 382 - 2005
- [b1]Hong Cui:
Automating Semantic Markup of Semi-Structured Text via an Induced Knowledge Base: A Case Study Using Floras. University of Illinois Urbana-Champaign, USA, 2005 - [j1]Haidar Moukdad, Hong Cui:
How Do Search Engines Handle Chinese Queries? Webology 2(3) (2005) - [c2]Hong Cui:
MARTT: Using induced knowledge base to automatically mark up plant taxonomic descriptions with XML. ASIST 2005 - 2002
- [c1]Hong Cui, P. Bryan Heidorn, Hong Zhang:
An approach to automatic classification of text for information retrieval. JCDL 2002: 96-97
Coauthor Index
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