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Journal Articles
- 2024
[j17]Mullai Murugan
, Bo Yuan, Eric Venner, Christie M. Ballantyne, Katherine M. Robinson, James C. Coons, Liwen Wang, Philip E. Empey, Richard A. Gibbs:
Empowering personalized pharmacogenomics with generative AI solutions. J. Am. Medical Informatics Assoc. 31(6): 1356-1366 (2024)- 2021
- [j16]Mullai Murugan, Lawrence J. Babb, Casey Overby Taylor, Luke V. Rasmussen, Robert R. Freimuth, Eric Venner, Fei Yan, Victoria Yi, Stephen J. Granite, Hana Zouk, Samuel J. Aronson, Kevin Power, Alexander Fedotov, David R. Crosslin, David Fasel, Gail P. Jarvik, Hakon Hakonarson, Hana Bangash, Iftikhar J. Kullo, John J. Connolly, Jordan G. Nestor, Pedro J. Caraballo, Wei-Qi Wei, Ken Wiley, Heidi L. Rehm, Richard A. Gibbs:
Genomic considerations for FHIR®; eMERGE implementation lessons. J. Biomed. Informatics 118: 103795 (2021) - 2019
- [j15]Eric Venner, Mullai Murugan, Walker Hale, Jordan M. Jones, Shan Lu, Victoria Yi, Richard A. Gibbs:
ARBoR: an identity and security solution for clinical reporting. J. Am. Medical Informatics Assoc. 26(11): 1370-1374 (2019) - 2018
- [j14]Samuel J. Aronson, Lawrence J. Babb, Darren C. Ames, Richard A. Gibbs, Eric Venner, John J. Connelly, Keith Marsolo, Chunhua Weng, Marc S. Williams, Andrea L. Hartzler, Wayne H. Liang, James D. Ralston, Emily Beth Devine, Shawn N. Murphy, Christopher G. Chute, Pedro J. Caraballo, Iftikhar J. Kullo, Robert R. Freimuth, Luke V. Rasmussen, Firas H. Wehbe, Josh F. Peterson, Jamie R. Robinson, Ken Wiley, Casey Overby Taylor, eMERGE Network EHRI Working Group:
Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example. J. Am. Medical Informatics Assoc. 25(10): 1375-1381 (2018) - 2017
- [j13]Yong Chen, Li Zhao, Yi Wang, Ming Cao, Violet Gelowani, Mingchu Xu, Smriti A. Agrawal, Yumei Li, Stephen P. Daiger, Richard A. Gibbs, Fei Wang, Rui Chen:
SeqCNV: a novel method for identification of copy number variations in targeted next-generation sequencing data. BMC Bioinform. 18(1): 147:1-147:9 (2017) - 2016
- [j12]David Rio Deiros, Richard A. Gibbs, Jeffrey Rogers:
DNAism: exploring genomic datasets on the web with Horizon Charts. BMC Bioinform. 17: 49 (2016) - [j11]Navin Rustagi, Oliver A. Hampton, Jie Li, Liu Xi, Richard A. Gibbs, Sharon E. Plon, Marek Kimmel, David A. Wheeler:
ITD assembler: an algorithm for internal tandem duplication discovery from short-read sequencing data. BMC Bioinform. 17: 188 (2016) - [j10]Zhuoyi Huang, Navin Rustagi, Narayanan Veeraraghavan, Andrew Carroll, Richard A. Gibbs, Eric Boerwinkle, Manjunath Gorentla Venkata, Fuli Yu:
A hybrid computational strategy to address WGS variant analysis in >5000 samples. BMC Bioinform. 17: 361 (2016) - [j9]Caleb F. Davis, Deborah I. Ritter, David A. Wheeler, Hongmei Wang, Yan Ding, Shannon P. Dugan, Matthew N. Bainbridge, Donna M. Muzny, Pulivarthi H. Rao, Tsz-Kwong Man, Sharon E. Plon, Richard A. Gibbs, Ching C. Lau:
SV-STAT accurately detects structural variation via alignment to reference-based assemblies. Source Code Biol. Medicine 11(1): 8 (2016) - 2015
- [j8]Xinxia Peng, Jean Thierry-Mieg, Danielle Thierry-Mieg, Andrew Nishida, Lenore Pipes, Marjan Bozinoski, Matthew J. Thomas, Sara Kelly, Jeffrey M. Weiss, Muthuswamy Raveendran, Donna M. Muzny, Richard A. Gibbs, Jeffrey Rogers, Gary P. Schroth, Michael G. Katze, Christopher E. Mason:
Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR). Nucleic Acids Res. 43(Database-Issue): 737-742 (2015) - 2014
- [j7]Jeffrey G. Reid, Andrew Carroll, Narayanan Veeraraghavan, Mahmoud Dahdouli, Andreas Sundquist, Adam C. English, Matthew N. Bainbridge, Simon White, William J. Salerno, Christian Buhay, Fuli Yu, Donna M. Muzny, Richard Daly, Geoff Duyk, Richard A. Gibbs, Eric Boerwinkle:
Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline. BMC Bioinform. 15: 30 (2014) - 2012
- [j6]Danny Challis, Jin Yu, Uday S. Evani, Andrew R. Jackson, Sameer Paithankar, Cristian Coarfa, Aleksandar Milosavljevic, Richard A. Gibbs, Fuli Yu:
An integrative variant analysis suite for whole exome next-generation sequencing data. BMC Bioinform. 13: 8 (2012) - 2005
- [j5]Brian S. Henriksen, Todd J. Zahn, Jeffrey D. Evanseck, Steven M. Firestine, Richard A. Gibbs:
Computational and Conformational Evaluation of FTase Alternative Substrates: Insight into a Novel Enzyme Binding Pocket. J. Chem. Inf. Model. 45(4): 1047-1052 (2005) - [j4]Jinghui Zhang, David A. Wheeler, Imtiaz Yakub, Sharon Wei, Raman Sood, William Rowe, Paul P. Liu, Richard A. Gibbs, Kenneth H. Buetow:
SNPdetector: A Software Tool for Sensitive and Accurate SNP Detection. PLoS Comput. Biol. 1(5) (2005) - 2000
- [j3]John Bouck, Michael P. McLeod, Kim Worley, Richard A. Gibbs:
The Human Transcript Database: a catalogue of full length cDNA inserts. Bioinform. 16(2): 176-177 (2000) - 1995
- [j2]Michael L. Metzker, Kyle M. Allain, Richard A. Gibbs:
Accurate determination of DNA in agarose gels using the novel algorithm GelScann(1.0). Comput. Appl. Biosci. 11(2): 187-194 (1995) - 1991
- [j1]Richard A. Gibbs, Peter J. Slater:
Distinct distance sets in a graph. Discret. Math. 93(2-3): 155-165 (1991)
Coauthor Index
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