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2020 – today
- 2023
[j15]Wenxuan Deng, Bolun Li
, Jiawei Wang, Wei Jiang, Xiting Yan, Ningshan Li, Milica Vukmirovic, Naftali Kaminski, Jing Wang, Hongyu Zhao:
A novel Bayesian framework for harmonizing information across tissues and studies to increase cell type deconvolution accuracy. Briefings Bioinform. 24(1) (2023)- [j14]Micha Sam Brickman Raredon, Junchen Yang, Neeharika Kothapalli, Wesley Lewis, Naftali Kaminski, Laura E. Niklason, Yuval Kluger:
Comprehensive visualization of cell-cell interactions in single-cell and spatial transcriptomics with NICHES. Bioinform. 39(1) (2023) - [j13]Yunqing Liu, Jiayi Zhao, Taylor Sterling Adams, Ningya Wang, Jonas Schupp, Weimiao Wu, John E. McDonough, Geoffrey Lowell Chupp, Naftali Kaminski, Zuoheng Wang, Xiting Yan:
iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects. BMC Bioinform. 24(1): 318 (2023) - [j12]Yunqing Liu, Jiayi Zhao, Taylor Sterling Adams, Ningya Wang, Jonas Schupp, Weimiao Wu, John E. McDonough, Geoffrey Lowell Chupp, Naftali Kaminski, Zuoheng Wang, Xiting Yan:
Correction: iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects. BMC Bioinform. 24(1): 394 (2023) - 2022
- [j11]Ye Yuan, Carlos Cosme, Taylor Sterling Adams, Jonas Schupp, Koji Sakamoto, Nikos Xylourgidis, Matthew Ruffalo, Jiachen Li, Naftali Kaminski, Ziv Bar-Joseph:
CINS: Cell Interaction Network inference from Single cell expression data. PLoS Comput. Biol. 18(9): 1010468 (2022) - 2021
- [j10]Hongyu Li, Biqing Zhu, Zhichao Xu, Taylor Adams, Naftali Kaminski, Hongyu Zhao:
A Markov random field model for network-based differential expression analysis of single-cell RNA-seq data. BMC Bioinform. 22(3): 524 (2021)
2010 – 2019
- 2018
- [j9]Jun Ding, James S. Hagood, Namasivayam Ambalavanan, Naftali Kaminski, Ziv Bar-Joseph:
iDREM: Interactive visualization of dynamic regulatory networks. PLoS Comput. Biol. 14(3) (2018) - 2015
- [c3]Grace T. Huang, Ioannis Tsamardinos, Vineet K. Raghu, Naftali Kaminski, Panayiotis V. Benos:
T-ReCS: Stable Selection of Dynamically Formed Groups of Features with Application to Prediction of Clinical Outcomes. Pacific Symposium on Biocomputing 2015: 431-442 - 2014
- [j8]Serena G. Liao, Yan Lin, Dongwan D. Kang, Divay Chandra, Jessica Bon, Naftali Kaminski, Frank C. Sciurba, George C. Tseng:
Missing value imputation in high-dimensional phenomic data: imputable or not, and how? BMC Bioinform. 15: 346 (2014) - [j7]Suicheng Gu, Xin Meng, Frank C. Sciurba, Hongxia Ma, Joseph K. Leader, Naftali Kaminski, David Gur, Jiantao Pu:
Bidirectional elastic image registration using B-spline affine transformation. Comput. Medical Imaging Graph. 38(4): 306-314 (2014) - 2012
- [j6]Xingbin Wang, Dongwan D. Kang, Kui Shen, Chi Song, Shuya Lu, Lun-Ching Chang, Serena G. Liao, Zhiguang Huo, Shaowu Tang, Ying Ding, Naftali Kaminski, Etienne Sibille, Yan Lin, Jia Li, George C. Tseng:
An R package suite for microarray meta-analysis in quality control, differentially expressed gene analysis and pathway enrichment detection. Bioinform. 28(19): 2534-2536 (2012) - [j5]Claudia Coronnello, Ryan J. Hartmaier, Arshi Arora, Luai Huleihel, Kusum V. Pandit, Abha S. Bais, Michael Butterworth, Naftali Kaminski, Gary D. Stormo, Steffi Oesterreich, Panayiotis V. Benos:
Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density. PLoS Comput. Biol. 8(12) (2012) - 2010
- [j4]Zhibao Mi, Kui Shen, Nan Song, Chunrong Cheng, Chi Song, Naftali Kaminski, George C. Tseng:
Module-based prediction approach for robust inter-study predictions in microarray data. Bioinform. 26(20): 2586-2593 (2010)
2000 – 2009
- 2008
- [c2]Tien-ho Lin, Naftali Kaminski, Ziv Bar-Joseph:
Alignment and classification of time series gene expression in clinical studies. ISMB 2008: 147-155 - 2007
- [j3]Naftali Kaminski, Ziv Bar-Joseph:
A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies. J. Comput. Biol. 14(3): 324-338 (2007) - 2006
- [c1]Naftali Kaminski, Ziv Bar-Joseph:
A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies. RECOMB 2006: 69-82 - 2005
- [j2]Wei Wu, Nilesh Dave, George C. Tseng, Thomas Richards, Eric P. Xing, Naftali Kaminski:
Comparison of normalization methods for CodeLink Bioarray data. BMC Bioinform. 6: 309 (2005) - 2004
- [j1]Yoseph Barash, Elinor Dehan, Meir Krupsky, Wilbur Franklin, Marc Geraci, Nir Friedman, Naftali Kaminski:
Comparative analysis of algorithms for signal quantitation from oligonucleotide microarrays. Bioinform. 20(6): 839-846 (2004)
Coauthor Index
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