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Journal Articles
- 2020
[j5]Hyeon-Jin Kim, Galip Gürkan Yardimci
, Giancarlo Bonora, Vijay Ramani, Jie Liu, Ruolan Qiu, Choli Lee, Jennifer Hesson, Carol B. Ware, Jay Shendure, Zhi-jun Duan, William Stafford Noble:
Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data. PLoS Comput. Biol. 16(9) (2020)- 2018
- [j4]Jie Liu, Dejun Lin, Galip Gürkan Yardimci, William Stafford Noble:
Unsupervised embedding of single-cell Hi-C data. Bioinform. 34(13): i96-i104 (2018) - [j3]Oana Ursu, Nathan Boley, Maryna Taranova, Y. X. Rachel Wang, Galip Gürkan Yardimci, William Stafford Noble, Anshul Kundaje:
GenomeDISCO: a concordance score for chromosome conformation capture experiments using random walks on contact map graphs. Bioinform. 34(16): 2701-2707 (2018) - 2017
- [j2]Koon-Kiu Yan, Galip Gürkan Yardimci, Chengfei Yan, William S. Noble, Mark Gerstein:
HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps. Bioinform. 33(14): 2199-2201 (2017) - 2015
- [j1]Galip Gürkan Yardimci, William Stafford Noble:
Predictive model of 3D domain formation via CTCF-mediated extrusion. Proc. Natl. Acad. Sci. USA 112(47): 14404-14405 (2015)
Conference and Workshop Papers
- 2019
- [c2]Alexandra Gesine Cauer, Gürkan Yardimci, Jean-Philippe Vert, Nelle Varoquaux, William Stafford Noble:
Inferring Diploid 3D Chromatin Structures from Hi-C Data. WABI 2019: 11:1-11:13 - 2006
- [c1]Galip Gürkan Yardimci, Alper Küçükural, Yücel Saygin, Osman Ugur Sezerman:
Modified Association Rule Mining Approach for the MHC-Peptide Binding Problem. ISCIS 2006: 165-173
Coauthor Index
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