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Journal Articles
- 2025
[j36]Pei-Hua Wang, Wei-Yeh Wu, Che-Yu Lee, Jia-Cheng Hong, Yufeng Jane Tseng
:
Advantages of two quantum programming platforms in quantum computing and quantum chemistry. J. Cheminformatics 17(1): 77 (2025)- 2024
- [j35]Yu-Yuan Yang, Ming-Yang Ho, Chung-Hwei Tai, Ruey-Meei Wu, Ming-Che Kuo, Yufeng Jane Tseng:
FastEval Parkinsonism: an instant deep learning-assisted video-based online system for Parkinsonian motor symptom evaluation. npj Digit. Medicine 7(1) (2024) - [j34]Ming-Yang Ho, Ming-Che Kuo, Ciao-Sin Chen, Ruey-Meei Wu, Ching-Chi Chuang, Chi-Sheng Shih, Yufeng Jane Tseng:
Pathological Gait Analysis With an Open-Source Cloud-Enabled Platform Empowered by Semi-Supervised Learning-PathoOpenGait. IEEE J. Biomed. Health Informatics 28(2): 1066-1077 (2024) - 2022
- [j33]Jen-Hao Chen, Yufeng Jane Tseng:
A general optimization protocol for molecular property prediction using a deep learning network. Briefings Bioinform. 23(1) (2022) - [j32]Tzu-Hui Yu, Bo-Han Su, Leo Chander Battalora, Sin Liu, Yufeng Jane Tseng:
Ensemble modeling with machine learning and deep learning to provide interpretable generalized rules for classifying CNS drugs with high prediction power. Briefings Bioinform. 23(1) (2022) - [j31]Chien Lee, Bo-Han Su, Yufeng Jane Tseng:
Comparative studies of AlphaFold, RoseTTAFold and Modeller: a case study involving the use of G-protein-coupled receptors. Briefings Bioinform. 23(5) (2022) - 2021
- [j30]Jen-Hao Chen, Yufeng Jane Tseng:
Different molecular enumeration influences in deep learning: an example using aqueous solubility. Briefings Bioinform. 22(3) (2021) - [j29]Yi Hsiao, Bo-Han Su, Yufeng J. Tseng:
Current development of integrated web servers for preclinical safety and pharmacokinetics assessments in drug development. Briefings Bioinform. 22(3) (2021) - [j28]Lu-Chi Liu, Ming-Yang Ho, Bo-Han Su, San-Yuan Wang, Ming-Tsung Hsu, Yufeng J. Tseng:
PanGPCR: predictions for multiple targets, repurposing and side effects. Bioinform. 37(8): 1184-1186 (2021) - 2020
- [j27]Tien-Chueh Kuo, Cheng-En Tan, San-Yuan Wang, Olivia A. Lin, Bo-Han Su, Ming-Tsung Hsu, Jessica Lin, Yu-Yen Cheng, Ciao-Sin Chen, Yu-Chieh Yang, Kuo-Hsing Chen, Shu-Wen Lin, Chao-Chi Ho, Ching-Hua Kuo, Yufeng Jane Tseng:
Human Breathomics Database. Database J. Biol. Databases Curation 2020: baz139 (2020) - 2019
- [j26]Pei-Hua Wang, Yi-shu Tu, Yufeng J. Tseng:
PgpRules: a decision tree based prediction server for P-glycoprotein substrates and inhibitors. Bioinform. 35(20): 4193-4195 (2019) - [j25]Pei-Hua Wang, Yi-shu Tu, Yufeng J. Tseng:
PgpRules: a decision tree based prediction server for P-glycoprotein substrates and inhibitors. Bioinform. 35(21): 4535 (2019) - [j24]Pei-Hua Wang, Yufeng Jane Tseng:
IntelliPatent: a web-based intelligent system for fast chemical patent claim drafting. J. Cheminformatics 11(1): 78 (2019) - 2018
- [j23]Tien-Chueh Kuo, Yufeng Jane Tseng:
LipidPedia: a comprehensive lipid knowledgebase. Bioinform. 34(17): 2982-2987 (2018) - 2017
- [j22]Alioune Schurz, Bo-Han Su, Yi-shu Tu, Tony Tsung-Yu Lu, Olivia A. Lin, Yufeng J. Tseng:
G.A.M.E.: GPU-accelerated mixture elucidator. J. Cheminformatics 9(1): 50 (2017) - [j21]Bo-Han Su, Meng-yu Shen, Yeu-Chern Harn, San-Yuan Wang, Alioune Schurz, Chieh Lin, Olivia A. Lin, Yufeng J. Tseng:
An efficient computer-aided structural elucidation strategy for mixtures using an iterative dynamic programming algorithm. J. Cheminformatics 9(1): 57:1-57:15 (2017) - [j20]Yeu-Chern Harn, Bo-Han Su, Yuan-Ling Ku, Olivia A. Lin, Cheng-Fu Chou, Yufeng J. Tseng:
NP-StructurePredictor: Prediction of Unknown Natural Products in Plant Mixtures. J. Chem. Inf. Model. 57(12): 3138-3148 (2017) - 2016
- [j19]Te-Hsuen Tzeng, Chun-Yen Kuo, San-Yuan Wang, Po-Kai Huang, Yen-Ming Huang, Wei-Che Hsieh, Yu-Jie Huang, Po-Hung Kuo, Shih-An Yu, Si-Chen Lee, Yufeng Jane Tseng, Wei-Cheng Tian, Shey-Shi Lu:
A Portable Micro Gas Chromatography System for Lung Cancer Associated Volatile Organic Compound Detection. IEEE J. Solid State Circuits 51(1): 259-272 (2016) - 2015
- [j18]Chi-Yu Shao, Bo-Han Su, Yi-shu Tu, Chieh Lin, Olivia A. Lin, Yufeng J. Tseng:
CypRules: a rule-based P450 inhibition prediction server. Bioinform. 31(11): 1869-1871 (2015) - [j17]Bo-Han Su, Yi-shu Tu, Olivia A. Lin, Yeu-Chern Harn, Meng-yu Shen, Yufeng J. Tseng:
Rule-Based Classification Models of Molecular Autofluorescence. J. Chem. Inf. Model. 55(2): 434-445 (2015) - [j16]Bo-Han Su, Yi-shu Tu, Chieh Lin, Chi-Yu Shao, Olivia A. Lin, Yufeng J. Tseng:
Rule-Based Prediction Models of Cytochrome P450 Inhibition. J. Chem. Inf. Model. 55(7): 1426-1434 (2015) - 2013
- [j15]Tien-Chueh Kuo, Tze-Feng Tian, Yufeng Jane Tseng:
3Omics: a web-based systems biology tool for analysis, integration and visualization of human transcriptomic, proteomic and metabolomic data. BMC Syst. Biol. 7: 64 (2013) - [j14]Yufeng Jane Tseng, Eric J. Martin, Cristian Bologa, Anang A. Shelat:
Cheminformatics aspects of high throughput screening: from robots to models: symposium summary. J. Comput. Aided Mol. Des. 27(5): 443-453 (2013) - [j13]Chi-Yu Shao, Sing-Zuo Chen, Bo-Han Su, Yufeng J. Tseng, Emilio Xavier Esposito, Anton J. Hopfinger:
Dependence of QSAR Models on the Selection of Trial Descriptor Sets: A Demonstration Using Nanotoxicity Endpoints of Decorated Nanotubes. J. Chem. Inf. Model. 53(1): 142-158 (2013) - [j12]Chia-Yun Chang, Ming-Tsung Hsu, Emilio Xavier Esposito, Yufeng J. Tseng:
Oversampling to Overcome Overfitting: Exploring the Relationship between Data Set Composition, Molecular Descriptors, and Predictive Modeling Methods. J. Chem. Inf. Model. 53(4): 958-971 (2013) - 2012
- [j11]Yufeng J. Tseng, Anton J. Hopfinger, Emilio Xavier Esposito:
The great descriptor melting pot: mixing descriptors for the common good of QSAR models. J. Comput. Aided Mol. Des. 26(1): 39-43 (2012) - [j10]Bo-Han Su, Yi-shu Tu, Emilio Xavier Esposito, Yufeng J. Tseng:
Predictive Toxicology Modeling: Protocols for Exploring hERG Classification and Tetrahymena pyriformis End Point Predictions. J. Chem. Inf. Model. 52(6): 1660-1673 (2012) - 2011
- [j9]Fang-Yu Lin, Yufeng J. Tseng:
Structure-Based Fragment Hopping for Lead Optimization Using Predocked Fragment Database. J. Chem. Inf. Model. 51(7): 1703-1715 (2011) - 2010
- [j8]San-Yuan Wang, Tsung-Jung Ho, Ching-Hua Kuo, Yufeng J. Tseng:
Chromaligner: a web server for chromatogram alignment. Bioinform. 26(18): 2338-2339 (2010) - [j7]Bo-Han Su, Meng-yu Shen, Emilio Xavier Esposito, Anton J. Hopfinger, Yufeng J. Tseng:
In Silico Binary Classification QSAR Models Based on 4D-Fingerprints and MOE Descriptors for Prediction of hERG Blockage. J. Chem. Inf. Model. 50(7): 1304-1318 (2010) - 2008
- [j6]Jianzhong Liu, Petra Kern, G. Frank Gerberick, Osvaldo Andrade Santos-Filho, Emilio Xavier Esposito, Anton J. Hopfinger, Yufeng J. Tseng:
Categorical QSAR models for skin sensitization based on local lymph node assay measures and both ground and excited state 4D-fingerprint descriptors. J. Comput. Aided Mol. Des. 22(6-7): 345-366 (2008) - [j5]Tao Zheng, Anton J. Hopfinger, Emilio Xavier Esposito, Jianzhong Liu, Yufeng J. Tseng:
Membrane-Interaction Quantitative Structure-Activity Relationship (MI-QSAR) Analyses of Skin Penetration Enhancers. J. Chem. Inf. Model. 48(6): 1238-1256 (2008) - 2007
- [j4]Manisha Iyer, Tao Zheng, Anton J. Hopfinger, Yufeng J. Tseng:
QSAR Analyses of Skin Penetration Enhancers. J. Chem. Inf. Model. 47(3): 1130-1149 (2007) - 2004
- [j3]Craig L. Senese, José S. Duca, Dahua Pan, Anton J. Hopfinger, Yufeng J. Tseng:
4D-Fingerprints, Universal QSAR and QSPR Descriptors. J. Chem. Inf. Model. 44(5): 1526-1539 (2004) - 2003
- [j2]Dahua Pan, Yufeng J. Tseng, Anton J. Hopfinger:
Quantitative Structure-Based Design: Formalism and Application of Receptor-Dependent RD-4D-QSAR Analysis to a Set of Glucose Analogue Inhibitors of Glycogen Phosphorylase. J. Chem. Inf. Comput. Sci. 43(5): 1591-1607 (2003) - [j1]Jianzhong Liu, Dahua Pan, Yufeng J. Tseng, Anton J. Hopfinger:
4D-QSAR Analysis of a Series of Antifungal P450 Inhibitors and 3D-Pharmacophore Comparisons as a Function of Alignment. J. Chem. Inf. Comput. Sci. 43(6): 2170-2179 (2003)
Conference and Workshop Papers
- 2024
- [c2]Ming-Yang Ho, Che-Ming Wu, Min-Sheng Wu, Yufeng Jane Tseng:
Every Pixel Has Its Moments: Ultra-High-Resolution Unpaired Image-to-Image Translation via Dense Normalization. ECCV (45) 2024: 312-328 - 2015
- [c1]Te-Hsuen Tzeng, Chun-Yen Kuo, San-Yuan Wang, Po-Kai Huang, Po-Hung Kuo, Yen-Ming Huang, Wei-Che Hsieh, Shih-An Yu, Yufeng Jane Tseng, Wei-Cheng Tian, Si-Chen Lee, Shey-Shi Lu:
21.5 A portable micro gas chromatography system for volatile compounds detection with 15ppb of sensitivity. ISSCC 2015: 1-3
Informal and Other Publications
- 2024
- [i1]Ming-Yang Ho, Che-Ming Wu, Min-Sheng Wu, Yufeng Jane Tseng:
Every Pixel Has its Moments: Ultra-High-Resolution Unpaired Image-to-Image Translation via Dense Normalization. CoRR abs/2407.04245 (2024)
Coauthor Index
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