![](https://dblp.uni-trier.de/img/logo.ua.320x120.png)
![](https://dblp.uni-trier.de/img/dropdown.dark.16x16.png)
![](https://dblp.uni-trier.de/img/peace.dark.16x16.png)
Остановите войну!
for scientists:
![search dblp search dblp](https://dblp.uni-trier.de/img/search.dark.16x16.png)
![search dblp](https://dblp.uni-trier.de/img/search.dark.16x16.png)
default search action
Shaun Mahony
Person information
Refine list
![note](https://dblp.uni-trier.de/img/note-mark.dark.12x12.png)
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
Journal Articles
- 2021
- [j16]Guanjue Xiang
, Belinda Giardine, Shaun Mahony
, Yu Zhang, Ross C. Hardison
:
S3V2-IDEAS: a package for normalizing, denoising and integrating epigenomic datasets across different cell types. Bioinform. 37(18): 3011-3013 (2021) - 2020
- [j15]Naomi Yamada, Prashant Kumar Kuntala
, B. Franklin Pugh, Shaun Mahony:
ChExMix: A Method for Identifying and Classifying Protein-DNA Interaction Subtypes. J. Comput. Biol. 27(3): 429-435 (2020) - 2019
- [j14]Naomi Yamada, William K. M. Lai, Nina Farrell, B. Franklin Pugh, Shaun Mahony
:
Characterizing protein-DNA binding event subtypes in ChIP-exo data. Bioinform. 35(6): 903-913 (2019) - [j13]Yu Zhang, Shaun Mahony
:
Direct prediction of regulatory elements from partial data without imputation. PLoS Comput. Biol. 15(11) (2019) - 2017
- [j12]Lila Rieber, Shaun Mahony
:
miniMDS: 3D structural inference from high-resolution Hi-C data. Bioinform. 33(14): i261-i266 (2017) - [j11]Akshay Kakumanu
, Silvia Velasco
, Esteban O. Mazzoni
, Shaun Mahony
:
Deconvolving sequence features that discriminate between overlapping regulatory annotations. PLoS Comput. Biol. 13(10) (2017) - 2014
- [j10]Shaun Mahony
, Matthew D. Edwards, Esteban O. Mazzoni
, Richard I. Sherwood, Akshay Kakumanu
, Carolyn A. Morrison, Hynek Wichterle
, David K. Gifford:
An Integrated Model of Multiple-Condition ChIP-Seq Data Reveals Predeterminants of Cdx2 Binding. PLoS Comput. Biol. 10(3) (2014) - 2012
- [j9]Yuchun Guo
, Shaun Mahony
, David K. Gifford:
High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial Binding Constraints. PLoS Comput. Biol. 8(8) (2012) - 2010
- [j8]Yuchun Guo
, Georgios Papachristoudis, Robert C. Altshuler
, Georg K. Gerber, Tommi S. Jaakkola, David K. Gifford, Shaun Mahony
:
Discovering homotypic binding events at high spatial resolution. Bioinform. 26(24): 3028-3034 (2010) - 2008
- [j7]Obi L. Griffith
, Stephen B. Montgomery
, Bridget Bernier, Bryan Chu, Katayoon Kasaian, Stein Aerts
, Shaun Mahony
, Monica C. Sleumer, Mikhail Bilenky, Maximilian Haeussler, Malachi Griffith
, Steven M. Gallo
, Belinda Giardine, Bart Hooghe, Peter Van Loo
, Enrique Blanco
, Amy Ticoll, Stuart Lithwick, Elodie Portales-Casamar
, Ian J. Donaldson, Gordon Robertson, Claes Wadelius, Pieter J. De Bleser, Dominique Vlieghe, Marc S. Halfon, Wyeth W. Wasserman
, Ross C. Hardison
, Casey M. Bergman
, Steven J. M. Jones
:
ORegAnno: an open-access community-driven resource for regulatory annotation. Nucleic Acids Res. 36(Database-Issue): 107-113 (2008) - 2007
- [j6]Shaun Mahony
, Panayiotis V. Benos
:
STAMP: a web tool for exploring DNA-binding motif similarities. Nucleic Acids Res. 35(Web-Server-Issue): 253-258 (2007) - [j5]Shaun Mahony
, Philip E. Auron, Panayiotis V. Benos
:
DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies. PLoS Comput. Biol. 3(3) (2007) - 2006
- [j4]Shaun Mahony
, Panayiotis V. Benos
, Terry J. Smith
, Aaron Golden:
Self-organizing neural networks to support the discovery of DNA-binding motifs. Neural Networks 19(6-7): 950-962 (2006) - 2005
- [j3]Shaun Mahony
, David Hendrix, Terry J. Smith
, Aaron Golden:
Self-Organizing Maps of Position Weight Matrices for Motif Discovery in Biological Sequences. Artif. Intell. Rev. 24(3-4): 397-413 (2005) - [j2]Shaun Mahony
, David Hendrix, Aaron Golden, Terry J. Smith
, Daniel S. Rokhsar
:
Transcription factor binding site identification using the self-organizing map. Bioinform. 21(9): 1807-1814 (2005) - 2004
- [j1]Shaun Mahony
, James O. McInerney, Terry J. Smith
, Aaron Golden:
Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models. BMC Bioinform. 5: 23 (2004)
Conference and Workshop Papers
- 2024
- [c9]Jianyu Yang, Kuangyu Yen, Shaun Mahony:
SEM: Size-Based Expectation Maximization for Characterizing Nucleosome Positions and Subtypes. RECOMB 2024: 320-323 - 2020
- [c8]Danying Shao, Gretta Kellogg
, Shaun Mahony, William K. M. Lai, B. Franklin Pugh:
PEGR: a management platform for ChIP-based next generation sequencing pipelines. PEARC 2020: 285-292 - 2018
- [c7]Naomi Yamada, William K. M. Lai, Nina Farrell, B. Franklin Pugh, Shaun Mahony:
Characterizing Protein-DNA Binding Event Subtypes in ChIP-Exo Data. RECOMB 2018: 291-292 - 2016
- [c6]Shefali S. Verma, Alex T. Frase, Anurag Verma, Sarah A. Pendergrass, Shaun Mahony, David W. Haas, Marylyn D. Ritchie:
Phenome-Wide Interaction Study (PheWIS) in Aids Clinical Trials Group Data (ACTG). PSB 2016: 57-68 - 2014
- [c5]Shaun Mahony, Matthew D. Edwards, Esteban O. Mazzoni
, Richard Sherwood, Akshay Kakumanu
, Carolyn A. Morrison, Hynek Wichterle
, David K. Gifford:
An Integrated Model of Multiple-Condition ChIP-Seq Data Reveals Predeterminants of Cdx2 Binding. RECOMB 2014: 175-176 - 2007
- [c4]Shaun Mahony
, Philip E. Auron, Panayiotis V. Benos
:
Inferring protein-DNA dependencies using motif alignments and mutual information. ISMB/ECCB (Supplement of Bioinformatics) 2007: 297-304 - 2006
- [c3]Nigel McCoy, Shaun Mahony
, Aaron Golden:
Gene Prediction in Metagenomic Libraries Using the Self Organising Map and High Performance Computing Techniques. GCCB 2006: 99-109 - 2005
- [c2]Shaun Mahony
, Aaron Golden, Terry J. Smith
, Panayiotis V. Benos
:
Improved detection of DNA motifs using a self-organized clustering of familial binding profiles. ISMB (Supplement of Bioinformatics) 2005: 283-291 - 2003
- [c1]Shaun Mahony, Terry J. Smith
, James O. McInerney, Aaron Golden:
A New Approach to Gene Prediction Using the Self-Organizing Map. CSB 2003: 444-445
Coauthor Index
![](https://dblp.uni-trier.de/img/cog.dark.24x24.png)
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from ,
, and
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and
to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-06-05 21:32 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint