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Journal Articles
- 2023
[j7]Thomas L. Athey, Matthew A. Wright, Marija Pavlovic, Vikram Chandrashekhar, Karl Deisseroth, Michael I. Miller, Joshua T. Vogelstein:
BrainLine: An Open Pipeline for Connectivity Analysis of Heterogeneous Whole-Brain Fluorescence Volumes. Neuroinformatics 21(4): 637-639 (2023)- 2021
- [j6]Christoph Leuze, Maged Goubran
, Muhamed Barakovic, Markus Aswendt, Qiyuan Tian, Brian Hsueh, A. Crow, E. M. M. Weber, Gary Steinberg, Michael Zeineh, E. D. Plowey, Alessandro Daducci, Giorgio M. Innocenti, Jean-Philippe Thiran, Karl Deisseroth, Jennifer A. McNab:
Comparison of diffusion MRI and CLARITY fiber orientation estimates in both gray and white matter regions of human and primate brain. NeuroImage 228: 117692 (2021) - 2019
- [j5]Samuel CD. Cartmell, Qiyuan Tian, Brandon J. Thio, Christoph Leuze, Li Ye, Nolan R. Williams, Grant Yang, Gabriel Ben-Dor, Karl Deisseroth, Warren M. Grill, Jennifer A. McNab, Casey H. Halpern:
Multimodal characterization of the human nucleus accumbens. NeuroImage 198: 137-149 (2019) - 2017
- [j4]Christoph Leuze, Markus Aswendt, Emily Ferenczi, Corey W. Liu, Brian Hsueh, Maged Goubran, Qiyuan Tian, Gary Steinberg, Michael M. Zeineh, Karl Deisseroth, Jennifer A. McNab:
The separate effects of lipids and proteins on brain MRI contrast revealed through tissue clearing. NeuroImage 156: 412-422 (2017) - 2011
- [j3]Kunal Paralikar, Peng Cong, Ofer Yizhar, Lief Ericsson Fenno, Wesley Santa, Chris Nielsen, David Dinsmoor, Bob Hocken, Gordon Munns, Jon Giftakis, Karl Deisseroth, Timothy Denison:
An Implantable Optical Stimulation Delivery System for Actuating an Excitable Biosubstrate. IEEE J. Solid State Circuits 46(1): 321-332 (2011) - [j2]Francisca Blumhagen, Peixin Zhu, Jennifer Shum, Yan-Ping Zhang Schärer, Emre Yaksi, Karl Deisseroth, Rainer W. Friedrich:
Neuronal filtering of multiplexed odour representations. Nat. 479(7374): 493-498 (2011) - [j1]Vikash Gilja, Cindy A. Chestek, Ilka Diester, Jaimie M. Henderson, Karl Deisseroth, Krishna V. Shenoy:
Challenges and Opportunities for Next-Generation Intracortically Based Neural Prostheses. IEEE Trans. Biomed. Eng. 58(7): 1891-1899 (2011)
Conference and Workshop Papers
- 2017
- [c5]Karl Deisseroth:
Keynote speakers: Nature's gift: How the discovery of structural principles in a microbial protein helped illuminate the pathophysiology of psychiatry. ICCP 2017: xii-xiv - [c4]Kwame S. Kutten, Nicolas Charon, Michael I. Miller, J. Tilak Ratnanather, Jordan Matelsky, Alexander D. Baden, Kunal Lillaney, Karl Deisseroth, Li Ye, Joshua T. Vogelstein:
A Large Deformation Diffeomorphic Approach to Registration of CLARITY Images via Mutual Information. MICCAI (1) 2017: 275-282 - 2014
- [c3]Yan Zhuge, Bhagat Patlolla, Charu Ramakrishnan, Ramin E. Beygui, Christopher K. Zarins, Karl Deisseroth, Ellen Kuhl, Oscar J. Abilez:
Human pluripotent stem cell tools for cardiac optogenetics. EMBC 2014: 6171-6174 - 2013
- [c2]Randal C. Burns, Kunal Lillaney, Daniel R. Berger, Logan Grosenick, Karl Deisseroth, R. Clay Reid, William R. Gray Roncal, Priya Manavalan, Davi Bock, Narayanan Kasthuri, Michael M. Kazhdan, Stephen J. Smith, Dean Kleissas, Eric A. Perlman, Kwanghun Chung, Nicholas C. Weiler, Jeff Lichtman, Alexander S. Szalay, Joshua T. Vogelstein, R. Jacob Vogelstein:
The open connectome project data cluster: scalable analysis and vision for high-throughput neuroscience. SSDBM 2013: 27:1-27:11 - 2011
- [c1]Jing Wang, Ilker Ozden, Mohamed Diagne, Fabien B. Wagner, David A. Borton, Benjamin Brush, Naubahar Agha, Rebecca Burwell, David Sheinberg, Ilka Diester, Karl Deisseroth, Arto V. Nurmikko:
Approaches to optical neuromodulation from rodents to non-human primates by integrated optoelectronic devices. EMBC 2011: 7525-7528
Informal and Other Publications
- 2016
- [i3]Kwame S. Kutten, Joshua T. Vogelstein, Nicolas Charon, Li Ye, Karl Deisseroth, Michael I. Miller:
Deformably Registering and Annotating Whole CLARITY Brains to an Atlas via Masked LDDMM. CoRR abs/1605.02060 (2016) - [i2]Kwame S. Kutten, Nicolas Charon, Michael I. Miller, J. Tilak Ratnanather, Karl Deisseroth, Li Ye, Joshua T. Vogelstein:
A Diffeomorphic Approach to Multimodal Registration with Mutual Information: Applications to CLARITY Mouse Brain Images. CoRR abs/1612.00356 (2016) - 2013
- [i1]Randal C. Burns, William R. Gray Roncal, Dean Kleissas, Kunal Lillaney, Priya Manavalan, Eric A. Perlman, Daniel R. Berger, Davi Bock, Kwanghun Chung, Logan Grosenick, Narayanan Kasthuri, Nicholas C. Weiler, Karl Deisseroth, Michael M. Kazhdan, Jeff Lichtman, R. Clay Reid, Stephen J. Smith, Alexander S. Szalay, Joshua T. Vogelstein, R. Jacob Vogelstein:
The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience. CoRR abs/1306.3543 (2013)
Coauthor Index
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