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Sheridan K. Houghten

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affiliation: Brock University, St. Catharines, Ontario, Canada

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2024
[j16]
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Joseph Alexander Brown, Sheridan K. Houghten, Gary B. Fogel:
2022 IEEE conference on computational intelligence in bioinformatics and computational biology (IEEE CIBCB, 2022). Biosyst. 237: 105129 (2024)
2023
[j15]
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Emilia Rutkowski, Sheridan K. Houghten, Joseph Alexander Brown:
A multi-objective genetic algorithm for compression of weighted graphs to simplify epidemic analysis. Appl. Soft Comput. 144: 110486 (2023)
[j14]
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James Sargant, Michael Dubé, Sheridan K. Houghten:
All lockdowns are not equal: Reducing epidemic impact through evolutionary computation. Biosyst. 230: 104935 (2023)
[j13]
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Omid Mohamad Beigi, Lígia Reis Nóbrega, Sheridan K. Houghten, Adriano Alves Pereira, Adriano de Oliveira Andrade:
Freezing of gait in Parkinson's disease: Classification using computational intelligence. Biosyst. 232: 105006 (2023)
[j12]
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Sheridan K. Houghten, Gary B. Fogel:
Conference Report on 2022 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (IEEE CIBCB 2022) [Conference Report]. IEEE Comput. Intell. Mag. 18(1): 13-15 (2023)
2022
[j11]
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Sheridan K. Houghten, Sharnendu Banik:
Effective decoders for DNA codes. Biosyst. 211: 104583 (2022)
2021
[j10]
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Veronica Suaste Morales, Sheridan K. Houghten:
Lossy Compression of Quality Values in Sequencing Data. IEEE ACM Trans. Comput. Biol. Bioinform. 18(5): 1958-1969 (2021)
2020
[j9]
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Tyler Kennedy Collins, Sheridan K. Houghten:
A centrality based multi-objective approach to disease gene association. Biosyst. 193-194: 104133 (2020)
[j8]
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James Alexander Hughes, Sheridan K. Houghten, Joseph Alexander Brown:
Models of Parkinson's Disease Patient Gait. IEEE J. Biomed. Health Informatics 24(11): 3103-3110 (2020)
2017
[j7]
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Paul E. Becker, Martin Derka, Sheridan K. Houghten, Jennifer Ulrich:
Build a Sporadic Group in Your Basement. Am. Math. Mon. 124(4): 291-305 (2017)
2016
[j6]
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James Alexander Hughes, Sheridan K. Houghten, Daniel A. Ashlock:
Restarting and recentering genetic algorithm variations for DNA fragment assembly: The necessity of a multi-strategy approach. Biosyst. 150: 35-45 (2016)
2014
[j5]
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James Alexander Hughes, Sheridan K. Houghten, Daniel A. Ashlock:
Recentering and restarting a genetic algorithm using a generative representation for an ordered gene problem. Int. J. Hybrid Intell. Syst. 11(4): 257-271 (2014)
2013
[j4]
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Guillermo M. Mallén-Fullerton, James Alexander Hughes, Sheridan K. Houghten, Guillermo Fernández-Anaya:
Benchmark datasets for the DNA fragment assembly problem. Int. J. Bio Inspired Comput. 5(6): 384-394 (2013)
2012
[j3]
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  - journals/biosystems/AshlockHBO12
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Daniel A. Ashlock, Sheridan K. Houghten, Joseph Alexander Brown, John Orth:
On the synthesis of DNA error correcting codes. Biosyst. 110(1): 1-8 (2012)
2011
[j2]
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Pascal Comte, Sergei Vassiliev, Sheridan K. Houghten, Doug Bruce:
Genetic algorithm with alternating selection pressure for protein side-chain packing and pK(a) prediction. Biosyst. 105(3): 263-270 (2011)
2003
[j1]
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  - journals/tit/HoughtenLTP03
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Sheridan K. Houghten, Clement W. H. Lam, Larry H. Thiel, J. A. Parker:
The extended quadratic residue code is the only (48, 24, 12) self-dual doubly-even code. IEEE Trans. Inf. Theory 49(1): 53-59 (2003)

Conference and Workshop Papers

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2023
[c57]
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Michael Dubé, James Sargant, Sheridan K. Houghten:
Comparison of Representations to Evolve Weighted Contact Networks with Epidemic Properties. CIBCB 2023: 1-8
[c56]
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Michael Dubé, James Sargant, Sheridan K. Houghten, Steffen Graether:
From Bits to Bases: Evolving a Versatile Construct for Biological Sequence and Network Data. CIBCB 2023: 1-9
[c55]
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Michael Dubé, Kevin Olenic, Sheridan K. Houghten:
What Drives Evolution of Self-Driving Automata? SSCI 2023: 1392-1397
2022
[c54]
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  - conf/cec/DubeH22
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Michael Dubé, Sheridan K. Houghten:
Now I Know My Alpha, Beta, Gammas: Variants in an Epidemic Scheme. CEC 2022: 1-8
[c53]
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James Sargant, Sheridan K. Houghten, Michael Dubé:
Evolving Weighted Contact Networks for Epidemic Modeling: the Ring and the Power. CEC 2022: 1-9
[c52]
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Omid Mohamad Beigi, Lígia Reis Nóbrega, Sheridan K. Houghten, Adriano de Oliveira Andrade, Adriano Alves Pereira:
Classification of Parkinson's Disease Patients and Effectiveness of Medication for Freezing of Gait. CIBCB 2022: 1-8
[c51]
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Michael Dubé, Sheridan K. Houghten:
Evaluation of Frameworks for Epidemic Variants and Infectivity using an Evolutionary Algorithm. CIBCB 2022: 1-9
[c50]
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James Sargant, Michael Dubé, Sheridan K. Houghten:
Evolving Lockdown Strategies to Minimize Infections in an Epidemic. CIBCB 2022: 1-8
2021
[c49]
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  - conf/cec/RutkowskiSHB21
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Emilia Rutkowski, James Sargant, Sheridan K. Houghten, Joseph Alexander Brown:
Evaluation of Communities from Exploratory Evolutionary Compression of Weighted Graphs. CEC 2021: 434-441
[c48]
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  - conf/cec/JimenezDHH21
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Rodrigo Vega Jimenez, Michael Dubé, Sheridan K. Houghten, James Alexander Hughes:
Weighting on the World to Change... an Epidemic. CEC 2021: 450-457
[c47]
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  - conf/cibcb/AminHH21
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Sumaiya Amin, Sheridan K. Houghten, James Alexander Hughes:
Vaccinating a Population is a Changing Programming Problem. CIBCB 2021: 1-10
[c46]
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  - conf/cibcb/AshlockBHM21
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Daniel A. Ashlock, Joseph Alexander Brown, Sheridan K. Houghten, Munir Makhmutov:
One Moose, Two Moose, Three Fields, More? CIBCB 2021: 1-7
[c45]
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  - conf/cibcb/ChenSHC21
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Guangyao Chen, James Sargant, Sheridan K. Houghten, Tyler Kennedy Collins:
Identification of Genes Associated with Alzheimer's Disease using Evolutionary Computation. CIBCB 2021: 1-9
2020
[c44]
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Joseph Alexander Brown, Daniel A. Ashlock, Sheridan K. Houghten, Angelo Romualdo:
Evolutionary Graph Compression and Diffusion Methods for City Discovery in Role Playing Games. CEC 2020: 1-8
[c43]
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Michael Dubé, Sheridan K. Houghten, Daniel A. Ashlock:
Modelling of Vaccination Strategies for Epidemics using Evolutionary Computation. CEC 2020: 1-8
[c42]
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  - conf/cec/HughesHB20
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James Alexander Hughes, Sheridan K. Houghten, Joseph Alexander Brown:
Gait Model Analysis of Parkinson's Disease Patients under Cognitive Load. CEC 2020: 1-8
[c41]
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  - conf/cec/RutkowskiH20
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Emilia Rutkowski, Sheridan K. Houghten:
Cryptanalysis of RSA: Integer Prime Factorization Using Genetic Algorithms. CEC 2020: 1-8
[c40]
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  - conf/cibcb/BanikH20
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Sharnendu Banik, Sheridan K. Houghten:
Effective Side Effect Machines for Decoding. CIBCB 2020: 1-8
[c39]
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Michael Dubé, Sheridan K. Houghten, Daniel A. Ashlock, James Alexander Hughes:
Evolving the Curve. CIBCB 2020: 1-8
[c38]
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James Alexander Hughes, Michael Dubé, Sheridan K. Houghten, Daniel A. Ashlock:
Vaccinating a Population is a Programming Problem. CIBCB 2020: 1-8
[c37]
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  - conf/cibcb/HughesRHA20
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James Alexander Hughes, Ryan E. R. Reid, Sheridan K. Houghten, Ross E. Andersen:
Using Genetic Programming to Investigate a Novel Model of Resting Energy Expenditure for Bariatric Surgery Patients. CIBCB 2020: 1-8
[c36]
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Emilia Rutkowski, Sheridan K. Houghten, Joseph Alexander Brown:
Extracting Information from Weighted Contact Networks via Genetic Algorithms. CIBCB 2020: 1-8
[c35]
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  - conf/ssci/HughesHKMAHASDB20
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James Alexander Hughes, William Hannah, Peter Kikkert, Barry MacKenzie, Wendy Ashlock, Sheridan K. Houghten, Daniel A. Ashlock, Matthew Stoodley, Michael Dubé, Rachel Brown, Amanda Saunders:
We Are Not Pontius Pilate: Acknowledging Ethics and Policy. SSCI 2020: 2975-2984
2019
[c34]
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Arvand Fazeli, Sheridan K. Houghten:
Deep Learning for the Prediction of Stock Market Trends. IEEE BigData 2019: 5513-5521
[c33]
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Michael Dubé, Sheridan K. Houghten, Daniel A. Ashlock:
Representation for Evolution of Epidemic Models. CEC 2019: 2370-2377
[c32]
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Michael Dubé, Sheridan K. Houghten, Daniel A. Ashlock:
Pandemic: A Graph Evolution Story. CIBCB 2019: 1-8
[c31]
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Sheridan K. Houghten, Angelo Romualdo, Tyler Kennedy Collins, Joseph Alexander Brown:
Compression of Biological Networks using a Genetic Algorithm with Localized Merge. CIBCB 2019: 1-8
[c30]
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James Alexander Hughes, Sheridan K. Houghten, Joseph Alexander Brown:
Descriptive Symbolic Models of Gaits from Parkinson's Disease Patients. CIBCB 2019: 1-8
2018
[c29]
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Michael Dubé, Sheridan K. Houghten, Daniel A. Ashlock:
Parameter selection for modeling of epidemic networks. CIBCB 2018: 1-8
[c28]
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Sheridan K. Houghten, Tyler Kennedy Collins, James Alexander Hughes, Joseph Alexander Brown:
Edit metric decoding: Return of the side effect machines. CIBCB 2018: 1-8
[c27]
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  - conf/cibcb/KazemiH18
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Yosra Kazemi, Sheridan K. Houghten:
A deep learning pipeline to classify different stages of Alzheimer's disease from fMRI data. CIBCB 2018: 1-8
[c26]
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  - conf/cibcb/SaundersAH18
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Amanda Saunders, Daniel A. Ashlock, Sheridan K. Houghten:
Hierarchical clustering and tree stability. CIBCB 2018: 1-8
2017
[c25]
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  - conf/cec/RibaricH17
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Tim Ribaric, Sheridan K. Houghten:
Genetic programming for improved cryptanalysis of elliptic curve cryptosystems. CEC 2017: 419-426
[c24]
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  - conf/cibcb/AshlockH17
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Daniel A. Ashlock, Sheridan K. Houghten:
Hybridization and ring optimization for larger sets of embeddable biomarkers. CIBCB 2017: 1-8
[c23]
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  - conf/cibcb/CollinsZBH17
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Tyler Kennedy Collins, Adel Zakirov, Joseph Alexander Brown, Sheridan K. Houghten:
Single-objective and multi-objective genetic algorithms for compression of biological networks. CIBCB 2017: 1-8
[c22]
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  - conf/cibcb/OrthHT17
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John Orth, Sheridan K. Houghten, Lindsey Tulloch:
Evaluation of the salmon algorithm. CIBCB 2017: 1-8
2016
[c21]
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  - conf/cec/HeraviH16
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Ashkan Entezari Heravi, Sheridan K. Houghten:
A methodology for disease gene association using centrality measures. CEC 2016: 24-31
[c20]
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  - conf/cibcb/BrownHCQ16
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Joseph Alexander Brown, Sheridan K. Houghten, Tyler Kennedy Collins, Qiang Qu:
Evolving graph compression using similarity measures for bioinformatics applications. CIBCB 2016: 1-6
2015
[c19]
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  - conf/cibcb/AshlockH15
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Daniel A. Ashlock, Sheridan K. Houghten:
Lexicode crossover for embeddable biomarkers. CIBCB 2015: 1-7
[c18]
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  - conf/cibcb/HeraviTH15
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Ashkan Entezari Heravi, Koosha Tahmasebipour, Sheridan K. Houghten:
Evolutionary computation for disease gene association. CIBCB 2015: 1-8
2014
[c17]
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  - conf/bibe/TahmasebipourH14
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Koosha Tahmasebipour, Sheridan K. Houghten:
Disease-Gene Association Using a Genetic Algorithm. BIBE 2014: 191-197
[c16]
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  - conf/bibe/GoodarziHL14
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Mohammad Goodarzi, Sheridan K. Houghten, Ping Liang:
Effect of Multi-K Contig Merging in de novo DNA Assembly. BIBE 2014: 355-361
[c15]
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  - conf/cibcb/HughesHMA14
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James Alexander Hughes, Sheridan K. Houghten, Guillermo M. Mallén-Fullerton, Daniel A. Ashlock:
Recentering and Restarting Genetic Algorithm variations for DNA Fragment Assembly. CIBCB 2014: 1-8
[c14]
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Collin Price, Sheridan K. Houghten, Sergei Vassiliev, Doug Bruce:
Modeling metal protein complexes from experimental extended X-ray absorption fine structure using evolutionary algorithms. CIBCB 2014: 1-7
2013
[c13]
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James Alexander Hughes, Joseph A. Brown, Sheridan K. Houghten, Daniel A. Ashlock:
Edit metric decoding: Representation strikes back. IEEE Congress on Evolutionary Computation 2013: 229-236
[c12]
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James Alexander Hughes, Sheridan K. Houghten, Daniel A. Ashlock:
Recentering, reanchoring & restarting an evolutionary algorithm. NaBIC 2013: 76-83
2012
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Zhiyuan Li, Sheridan K. Houghten:
Searching for Optimal Deletion Correcting Codes: New Properties and Extensions of Tenengolts Codes. CIT 2012: 647-654
[c10]
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Farhad Alizadeh Noori, Sheridan K. Houghten:
A multi-objective genetic algorithm with side effect machines for motif discovery. CIBCB 2012: 275-282
[c9]
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Daniel E. McCarney, Sheridan K. Houghten, Brian J. Ross:
Evolutionary approaches to the generation of optimal error correcting codes. GECCO 2012: 1135-1142
2011
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Joseph A. Brown, Daniel A. Ashlock, John Orth, Sheridan K. Houghten:
Autogeneration of fractal photographic mosaic images. IEEE Congress on Evolutionary Computation 2011: 1116-1123
[c7]
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John Orth, Sheridan K. Houghten:
Optimizing the Salmon Algorithm for the construction of DNA error-correcting codes. CIBCB 2011: 102-108
2010
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Daniel A. Ashlock, Sheridan K. Houghten:
Ring optimization of edit metric codes in DNA. BCB 2010: 222-229
[c5]
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Joseph A. Brown, Sheridan K. Houghten, Daniel A. Ashlock:
Side effect machines for quaternary edit metric decoding. CIBCB 2010: 1-8
2009
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Joseph A. Brown, Sheridan K. Houghten, Daniel A. Ashlock:
Edit metric decoding: a new hope. C3S2E 2009: 233-242
[c3]
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Daniel A. Ashlock, Sheridan K. Houghten:
DNA error correcting codes: No crossover. CIBCB 2009: 38-45
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  - conf/cics/BrownHO09
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Joseph A. Brown, Sheridan K. Houghten, Beatrice M. Ombuki-Berman:
Genetic algorithm cryptanalysis of a substitution permutation network. CICS 2009: 115-121
2005
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Daniel A. Ashlock, Sheridan K. Houghten:
A Novel Variation Operator for More Rapid Evolution of DNA Error Correcting Codes. CIBCB 2005: 53-60

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