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2020 – today
- 2022
- [j59]Rick Wertenbroek
, Simone Rubinacci
, Ioannis Xenarios, Yann Thoma
, Olivier Delaneau:
XSI - a genotype compression tool for compressive genomics in large biobanks. Bioinform. 38(15): 3778-3784 (2022) - [j58]Nastassia Gobet
, Maxime Jan
, Paul Franken
, Ioannis Xenarios
:
Towards mouse genetic-specific RNA-sequencing read mapping. PLoS Comput. Biol. 18(9): 1010552 (2022) - 2021
- [j57]Anna Niarakis
, Martin Kuiper, Marek Ostaszewski
, Rahuman S. Malik-Sheriff
, Cristina Casals-Casas, Denis Thieffry
, Tom C. Freeman, Paul D. Thomas, Vasundra Touré, Vincent Noël
, Gautier Stoll
, Julio Saez-Rodriguez
, Aurélien Naldi
, Eugenia Oshurko
, Ioannis Xenarios, Sylvain Soliman
, Claudine Chaouiya
, Tomás Helikar
, Laurence Calzone
:
Setting the basis of best practices and standards for curation and annotation of logical models in biology - highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop. Briefings Bioinform. 22(2): 1848-1859 (2021) - 2020
- [j56]Anne Morgat
, Thierry Lombardot
, Elisabeth Coudert, Kristian B. Axelsen, Teresa Batista Neto, Sebastien Gehant, Parit Bansal
, Jerven T. Bolleman
, Elisabeth Gasteiger, Edouard De Castro, Delphine Baratin, Monica Pozzato
, Ioannis Xenarios, Sylvain Poux
, Nicole Redaschi
, Alan J. Bridge
, The UniProt Consortium:
Enzyme annotation in UniProtKB using Rhea. Bioinform. 36(6): 1896-1901 (2020) - [j55]Simon Dellicour
, Philippe Lemey, Jean Artois, Tommy T. Lam, Alice Fusaro
, Isabella Monne
, Giovanni Cattoli, Dmitry Kuznetsov, Ioannis Xenarios, Gwenaelle Dauphin, Wantanee Kalpravidh, Sophie von Dobschütz, Filip Claes, Scott H. Newman, Marc A. Suchard
, Guy Baele, Marius Gilbert:
Incorporating heterogeneous sampling probabilities in continuous phylogeographic inference - Application to H5N1 spread in the Mekong region. Bioinform. 36(7): 2098-2104 (2020) - [j54]Amel Bekkar
, Anita Nasrallah, Nicolas Guex
, Lluis Fajas
, Ioannis Xenarios, Isabel C. Lopez-Mejia
:
PamgeneAnalyzeR: open and reproducible pipeline for kinase profiling. Bioinform. 36(20): 5117-5119 (2020)
2010 – 2019
- 2019
- [j53]Maria Livia Famiglietti
, Anne Estreicher
, Lionel Breuza
, Sylvain Poux
, Nicole Redaschi
, Ioannis Xenarios
, Alan J. Bridge
:
An enhanced workflow for variant interpretation in UniProtKB/Swiss-Prot improves consistency and reuse in ClinVar. Database J. Biol. Databases Curation 2019: baz040 (2019) - [j52]Thierry Lombardot
, Anne Morgat
, Kristian B. Axelsen
, Lucila Aimo, Nevila Hyka-Nouspikel, Anne Niknejad, Alexandr Ignatchenko
, Ioannis Xenarios, Elisabeth Coudert, Nicole Redaschi
, Alan J. Bridge
:
Updates in Rhea: SPARQLing biochemical reaction data. Nucleic Acids Res. 47(Database-Issue): D596-D600 (2019) - 2018
- [j51]Amel Bekkar
, Anne Estreicher
, Anne Niknejad, Cristina Casals-Casas
, Alan J. Bridge
, Ioannis Xenarios, Julien Dorier
, Isaac Crespo:
Expert curation for building network-based dynamical models: a case study on atherosclerotic plaque formation. Database J. Biol. Databases Curation 2018: bay031 (2018) - [j50]Kyubum Lee
, Maria Livia Famiglietti, Aoife McMahon
, Chih-Hsuan Wei
, Jacqueline A. L. MacArthur
, Sylvain Poux, Lionel Breuza
, Alan J. Bridge
, Fiona Cunningham
, Ioannis Xenarios, Zhiyong Lu
:
Scaling up data curation using deep learning: An application to literature triage in genomic variation resources. PLoS Comput. Biol. 14(8) (2018) - [c3]Simone Casale Brunet, Thierry Schüpbach, Nicolas Guex
, Christian Iseli
, Alan J. Bridge, Dmitry Kuznetsov, Christian J. A. Sigrist, Phillippe Lemercier, Ioannis Xenarios, Endri Bezati:
Towards in the Field Fast Pathogens Detection Using FPGAs. FPL 2018: 463-464 - 2017
- [j49]Robert D. Finn, Teresa K. Attwood
, Patricia C. Babbitt, Alex Bateman
, Peer Bork, Alan J. Bridge
, Hsin-Yu Chang
, Zsuzsanna Dosztányi
, Sara El-Gebali
, Matthew Fraser, Julian Gough, David Haft, Gemma L. Holliday
, Hongzhan Huang, Xiaosong Huang
, Ivica Letunic
, Rodrigo Lopez, Shennan Lu, Aron Marchler-Bauer
, Huaiyu Mi, Jaina Mistry, Darren A. Natale
, Marco Necci
, Gift Nuka, Christine A. Orengo, Young Mi Park
, Sebastien Pesseat
, Damiano Piovesan
, Simon C. Potter
, Neil D. Rawlings
, Nicole Redaschi
, Lorna J. Richardson
, Catherine Rivoire
, Amaia Sangrador-Vegas
, Christian J. A. Sigrist
, Ian Sillitoe, Ben Smithers
, Silvano Squizzato, Granger G. Sutton, Narmada Thanki, Paul D. Thomas
, Silvio C. E. Tosatto
, Cathy H. Wu
, Ioannis Xenarios, Lai-Su L. Yeh, Siew-Yit Yong, Alex L. Mitchell
:
InterPro in 2017 - beyond protein family and domain annotations. Nucleic Acids Res. 45(Database-Issue): D190-D199 (2017) - [j48]Anne Morgat
, Thierry Lombardot
, Kristian B. Axelsen
, Lucila Aimo
, Anne Niknejad, Nevila Hyka-Nouspikel, Elisabeth Coudert
, Monica Pozzato, Marco Pagni
, Sébastien Moretti
, Steven Rosanoff, Joseph Onwubiko
, Lydie Bougueleret, Ioannis Xenarios, Nicole Redaschi
, Alan J. Bridge
:
Updates in Rhea - an expert curated resource of biochemical reactions. Nucleic Acids Res. 45(Database-Issue): D415-D418 (2017) - [c2]Sara Schulthess, Anastasia Chasapi, Ioannis Xenarios, Martial Sankar, Claire Clivaz:
HumaReC project: digital New Testament and continuous data publishing. DH 2017 - 2016
- [j47]Megan Druce, Chantal Hulo, Patrick Masson
, Paula Sommer
, Ioannis Xenarios, Philippe Le Mercier
, Tulio de Oliveira:
Improving HIV proteome annotation: new features of BioAfrica HIV Proteomics Resource. Database J. Biol. Databases Curation 2016 (2016) - [j46]Ayush Singhal, Robert Leaman, Natalie L. Catlett, Thomas Lemberger, Johanna R. McEntyre
, Shawn W. Polson
, Ioannis Xenarios, Cecilia N. Arighi
, Zhiyong Lu:
Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges. Database J. Biol. Databases Curation 2016 (2016) - [j45]Julien Dorier
, Isaac Crespo
, Anne Niknejad
, Robin Liechti, Martin Ebeling, Ioannis Xenarios:
Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method. BMC Bioinform. 17: 410 (2016) - 2015
- [j44]Aurélien Naldi
, Pedro T. Monteiro
, Christoph Müssel, Hans A. Kestler
, Denis Thieffry
, Ioannis Xenarios, Julio Saez-Rodriguez
, Tomás Helikar
, Claudine Chaouiya
:
Cooperative development of logical modelling standards and tools with CoLoMoTo. Bioinform. 31(7): 1154-1159 (2015) - [j43]Lucila Aimo
, Robin Liechti, Nevila Hyka-Nouspikel, Anne Niknejad
, Anne Gleizes, Lou Götz, Dmitry Kuznetsov
, Fabrice P. A. David, F. Gisou van der Goot, Howard Riezman
, Lydie Bougueleret, Ioannis Xenarios, Alan J. Bridge
:
The SwissLipids knowledgebase for lipid biology. Bioinform. 31(17): 2860-2866 (2015) - [j42]Elke Schaper, Alexander Korsunsky, Julija Pecerska, Antonio Messina, Riccardo Murri, Heinz Stockinger
, Stefan Zoller, Ioannis Xenarios, Maria Anisimova:
TRAL: tandem repeat annotation library. Bioinform. 31(18): 3051-3053 (2015) - [j41]Alex L. Mitchell
, Hsin-Yu Chang
, Louise C. Daugherty
, Matthew Fraser
, Sarah Hunter
, Rodrigo Lopez, Craig McAnulla, Conor McMenamin, Gift Nuka, Sebastien Pesseat
, Amaia Sangrador-Vegas
, Maxim Scheremetjew
, Claudia Rato
, Siew-Yit Yong
, Alex Bateman
, Marco Punta
, Teresa K. Attwood
, Christian J. A. Sigrist
, Nicole Redaschi
, Catherine Rivoire
, Ioannis Xenarios, Daniel Kahn, Dominique Guyot, Peer Bork
, Ivica Letunic
, Julian Gough, Matt E. Oates
, Daniel H. Haft, Hongzhan Huang, Darren A. Natale
, Cathy H. Wu
, Christine A. Orengo, Ian Sillitoe, Huaiyu Mi, Paul D. Thomas
, Robert D. Finn
:
The InterPro protein families database: the classification resource after 15 years. Nucleic Acids Res. 43(Database-Issue): 213-221 (2015) - [j40]Anne Morgat
, Kristian B. Axelsen
, Thierry Lombardot
, Rafael Alcántara, Lucila Aimo
, Mohamed Zerara, Anne Niknejad
, Eugeni Belda
, Nevila Hyka-Nouspikel, Elisabeth Coudert
, Nicole Redaschi
, Lydie Bougueleret, Christoph Steinbeck
, Ioannis Xenarios, Alan J. Bridge
:
Updates in Rhea - a manually curated resource of biochemical reactions. Nucleic Acids Res. 43(Database-Issue): 459-464 (2015) - [j39]Ivo Pedruzzi
, Catherine Rivoire
, Andrea H. Auchincloss
, Elisabeth Coudert
, Guillaume Keller, Edouard De Castro
, Delphine Baratin, Béatrice A. Cuche, Lydie Bougueleret, Sylvain Poux
, Nicole Redaschi
, Ioannis Xenarios, Alan J. Bridge
:
HAMAP in 2015: updates to the protein family classification and annotation system. Nucleic Acids Res. 43(Database-Issue): 1064-1070 (2015) - [j38]Nicolas Guex
, Isaac Crespo
, Sylvian Bron, Assia Ifticene-Treboux, Eveline Faes-van't Hull, Solange Kharoubi, Robin Liechti, Patricia Werffeli, Mark Ibberson
, Francois Majo, Michäel Nicolas, Julien Laurent, Abhishek Garg, Khalil Zaman, Hans-Anton Lehr, Brian J. Stevenson, Curzio Rüegg, George Coukos
, Jean-François Delaloye, Ioannis Xenarios, Marie-Agnes Doucey:
Angiogenic Activity of Breast Cancer Patients' Monocytes Reverted by Combined Use of Systems Modeling and Experimental Approaches. PLoS Comput. Biol. 11(3) (2015) - 2014
- [j37]Thomas Bernard
, Alan J. Bridge
, Anne Morgat
, Sébastien Moretti
, Ioannis Xenarios
, Marco Pagni
:
Reconciliation of metabolites and biochemical reactions for metabolic networks. Briefings Bioinform. 15(1): 123-135 (2014) - [j36]Filip Claes, Dmitry Kuznetsov
, Robin Liechti, Sophie von Dobschütz, Bao Dinh Truong, Anne Gleizes, Daniele Conversa, Alessandro Colonna, Ettore Demaio, Sabina Ramazzotto, Fairouz Larfaoui, Julio Pinto, Philippe Le Mercier
, Ioannis Xenarios
, Gwenaelle Dauphin:
The EMPRES-i genetic module: a novel tool linking epidemiological outbreak information and genetic characteristics of influenza viruses. Database J. Biol. Databases Curation 2014 (2014) - [j35]Heinz Stockinger
, Adrian M. Altenhoff
, Konstantin Arnold, Amos Bairoch
, Frederic B. Bastian
, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane
, Philippe Le Mercier
, Frédérique Lisacek, Olivier Michielin
, Patricia M. Palagi
, Jacques Rougemont, Torsten Schwede
, Christian von Mering
, Erik van Nimwegen
, Daniel Walther, Ioannis Xenarios, Mihaela Zavolan, Evgeny M. Zdobnov
, Vincent Zoete, Ron D. Appel:
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. Nucleic Acids Res. 42(Webserver-Issue): 436-441 (2014) - [j34]Antonio Rausell
, Pejman Mohammadi
, Paul J. McLaren
, István Bartha, Ioannis Xenarios, Jacques Fellay
, Amalio Telenti:
Analysis of Stop-Gain and Frameshift Variants in Human Innate Immunity Genes. PLoS Comput. Biol. 10(7) (2014) - 2013
- [j33]Thierry Schüpbach, Marco Pagni
, Alan J. Bridge
, Lydie Bougueleret, Ioannis Xenarios
, Lorenzo Cerutti:
pfsearchV3: a code acceleration and heuristic to search PROSITE profiles. Bioinform. 29(9): 1215-1217 (2013) - [j32]Marco Pagni
, Hélène Niculita-Hirzel
, Loïc Pellissier, Anne Dubuis, Ioannis Xenarios
, Antoine Guisan
, Ian R. Sanders
, Jérôme Goudet, Nicolas Guex
:
Density-based hierarchical clustering of pyro-sequences on a large scale - the case of fungal ITS1. Bioinform. 29(10): 1268-1274 (2013) - [j31]Nicola Bonzanni, Abhishek Garg, K. Anton Feenstra
, Judith Schütte, Sarah Kinston, Diego Miranda-Saavedra, Jaap Heringa, Ioannis Xenarios
, Berthold Göttgens
:
Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model. Bioinform. 29(13): 80-88 (2013) - [j30]Anne-Lise Veuthey, Alan J. Bridge
, Julien Gobeill
, Patrick Ruch
, Johanna R. McEntyre
, Lydie Bougueleret, Ioannis Xenarios
:
Application of text-mining for updating protein post-translational modification annotation in UniProtKB. BMC Bioinform. 14: 104 (2013) - [j29]Claudine Chaouiya
, Duncan Bérenguier, Sarah M. Keating
, Aurélien Naldi
, Martijn P. van Iersel
, Nicolas Rodriguez
, Andreas Dräger
, Finja Büchel
, Thomas Cokelaer
, Bryan M. Kowal, Benjamin Wicks, Emanuel J. V. Gonçalves
, Julien Dorier
, Michel Page, Pedro T. Monteiro
, Axel von Kamp, Ioannis Xenarios, Hidde de Jong
, Michael Hucka
, Steffen Klamt
, Denis Thieffry
, Nicolas Le Novère, Julio Saez-Rodriguez
, Tomás Helikar
:
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. BMC Syst. Biol. 7: 135 (2013) - [j28]Christian J. A. Sigrist
, Edouard De Castro
, Lorenzo Cerutti, Béatrice A. Cuche, Nicolas Hulo, Alan J. Bridge
, Lydie Bougueleret, Ioannis Xenarios
:
New and continuing developments at PROSITE. Nucleic Acids Res. 41(Database-Issue): 344-347 (2013) - [j27]Patrick Masson
, Chantal Hulo, Edouard De Castro
, Hans Bitter, Lore Gruenbaum, Laurent Essioux, Lydie Bougueleret, Ioannis Xenarios
, Philippe Le Mercier
:
ViralZone: recent updates to the virus knowledge resource. Nucleic Acids Res. 41(Database-Issue): 579-583 (2013) - [j26]Ivo Pedruzzi
, Catherine Rivoire
, Andrea H. Auchincloss
, Elisabeth Coudert
, Guillaume Keller, Edouard De Castro
, Delphine Baratin, Béatrice A. Cuche, Lydie Bougueleret, Sylvain Poux
, Nicole Redaschi
, Ioannis Xenarios
, Alan J. Bridge
:
HAMAP in 2013, new developments in the protein family classification and annotation system. Nucleic Acids Res. 41(Database-Issue): 584-589 (2013) - 2012
- [j25]Sarah W. Burge
, Teresa K. Attwood
, Alex Bateman
, Tanya Z. Berardini
, J. Michael Cherry, Claire O'Donovan
, Ioannis Xenarios, Pascale Gaudet:
Biocurators and Biocuration: surveying the 21st century challenges. Database J. Biol. Databases Curation 2012 (2012) - [j24]Emily C. Dimmer, Rachael P. Huntley
, Yasmin Alam-Faruque, Tony Sawford, Claire O'Donovan
, Maria Jesus Martin
, Benoit Bely
, Paul Browne, Wei Mun Chan, Ruth Y. Eberhardt
, Michael Gardner, Kati Laiho, Duncan Legge, Michele Magrane, Klemens Pichler
, Diego Poggioli, Harminder Sehra, Andrea H. Auchincloss, Kristian B. Axelsen, Marie-Claude Blatter, Emmanuel Boutet, Silvia Braconi-Quintaje, Lionel Breuza
, Alan J. Bridge
, Elisabeth Coudert
, Anne Estreicher
, Maria Livia Famiglietti, Serenella Ferro-Rojas, Marc Feuermann, Arnaud Gos, Nadine Gruaz-Gumowski, Ursula Hinz, Chantal Hulo, Janet James, Silvia Jimenez, Florence Jungo
, Guillaume Keller, Phillippe Lemercier, Damien Lieberherr, Patrick Masson
, Madelaine Moinat, Ivo Pedruzzi
, Sylvain Poux
, Catherine Rivoire
, Bernd Roechert, Michel Schneider
, Andre Stutz, Shyamala Sundaram, Michael Tognolli
, Lydie Bougueleret, Ghislaine Argoud-Puy, Isabelle Cusin, Paula Duek Roggli, Ioannis Xenarios
, Rolf Apweiler
:
The UniProt-GO Annotation database in 2011. Nucleic Acids Res. 40(Database-Issue): 565-570 (2012) - [j23]Rafael Alcántara
, Kristian B. Axelsen
, Anne Morgat
, Eugeni Belda
, Elisabeth Coudert
, Alan J. Bridge
, Hong Cao, Paula de Matos, Marcus Ennis
, Steve Turner, Gareth I. Owen
, Lydie Bougueleret, Ioannis Xenarios
, Christoph Steinbeck
:
Rhea - a manually curated resource of biochemical reactions. Nucleic Acids Res. 40(Database-Issue): 754-760 (2012) - [j22]Anne Morgat
, Eric Coissac
, Elisabeth Coudert
, Kristian B. Axelsen
, Guillaume Keller, Amos Bairoch
, Alan J. Bridge
, Lydie Bougueleret, Ioannis Xenarios
, Alain Viari:
UniPathway: a resource for the exploration and annotation of metabolic pathways. Nucleic Acids Res. 40(Database-Issue): 761-769 (2012) - [j21]Panu Artimo, Manohar Jonnalagedda, Konstantin Arnold, Delphine Baratin, Gábor Csárdi
, Edouard De Castro
, Severine Duvaud, Volker Flegel, Arnaud Fortier, Elisabeth Gasteiger
, Aurélien Grosdidier
, Céline Hernandez
, Vassilios Ioannidis
, Dmitri Kuznetsov
, Robin Liechti, Sébastien Moretti
, Khaled Mostaguir, Nicole Redaschi
, Grégoire Rossier
, Ioannis Xenarios
, Heinz Stockinger
:
ExPASy: SIB bioinformatics resource portal. Nucleic Acids Res. 40(Web-Server-Issue): 597-603 (2012) - 2011
- [j20]Brigitte Boeckmann, Marc Robinson-Rechavi
, Ioannis Xenarios
, Christophe Dessimoz
:
Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees. Briefings Bioinform. 12(5): 423-435 (2011) - [j19]Martial Sankar, Karen S. Osmont
, Jakub Rolcik, Bojan Gujas
, Danuse Tarkowska
, Miroslav Strnad, Ioannis Xenarios
, Christian S. Hardtke
:
A qualitative continuous model of cellular auxin and brassinosteroid signaling and their crosstalk. Bioinform. 27(10): 1404-1412 (2011) - [j18]Oksana Riba-Grognuz
, Laurent Keller
, Laurent Falquet
, Ioannis Xenarios
, Yannick Wurm
:
Visualization and quality assessment of de novo genome assemblies. Bioinform. 27(24): 3425-3426 (2011) - [j17]Chantal Hulo, Edouard De Castro
, Patrick Masson
, Lydie Bougueleret, Amos Bairoch
, Ioannis Xenarios
, Philippe Le Mercier
:
ViralZone: a knowledge resource to understand virus diversity. Nucleic Acids Res. 39(Database-Issue): 576-582 (2011) - [j16]Paolo Di Tommaso
, Sébastien Moretti
, Ioannis Xenarios
, Miquel Orobitg
, Alberto Montanyola, Jia-Ming Chang, Jean-François Taly, Cédric Notredame
:
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension. Nucleic Acids Res. 39(Web-Server-Issue): 13-17 (2011) - 2010
- [j15]Robin Liechti, Gábor Csárdi
, Sven Bergmann, Frédéric Schütz
, Thierry Sengstag, Sylvia F. Boj, Joan-Marc Servitja, Jorge Ferrer
, Leentje Van Lommel, Frans Schuit, Sonia Klinger, Bernard Thorens, Najib Naamane, Decio L. Eizirik
, Lorella Marselli, Marco Bugliani, Piero Marchetti, Stephanie Lucas
, Cecilia Holm, C. Victor Jongeneel
, Ioannis Xenarios:
EuroDia: a beta-cell gene expression resource. Database J. Biol. Databases Curation 2010 (2010) - [j14]Robin Liechti, Anne Gleizes, Dmitry Kuznetsov
, Lydie Bougueleret, Philippe Le Mercier
, Amos Bairoch
, Ioannis Xenarios:
OpenFluDB, a database for human and animal influenza virus. Database J. Biol. Databases Curation 2010 (2010) - [j13]Thierry Schüpbach, Ioannis Xenarios
, Sven Bergmann, Karen Kapur:
FastEpistasis: a high performance computing solution for quantitative trait epistasis. Bioinform. 26(11): 1468-1469 (2010)
2000 – 2009
- 2009
- [j12]Olivier Martin, Armand Valsesia
, Amalio Telenti, Ioannis Xenarios
, Brian J. Stevenson:
AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context. Bioinform. 25(5): 662-663 (2009) - [j11]Abhishek Garg, Kartik Mohanram, Alessandro Di Cara, Giovanni De Micheli, Ioannis Xenarios
:
Modeling stochasticity and robustness in gene regulatory networks. Bioinform. 25(12) (2009) - [j10]Alexandre Gattiker, Leandro Hermida
, Robin Liechti, Ioannis Xenarios
, Olivier Collin
, Jacques Rougemont, Michael Primig
:
MIMAS 3.0 is a Multiomics Information Management and Annotation System. BMC Bioinform. 10 (2009) - [j9]Alexandre Gattiker, Christophe Dessimoz
, Adrian Schneider, Ioannis Xenarios
, Marco Pagni
, Jacques Rougemont:
The Microbe browser for comparative genomics. Nucleic Acids Res. 37(Web-Server-Issue): 296-299 (2009) - 2008
- [j8]Abhishek Garg, Alessandro Di Cara, Ioannis Xenarios
, Luis Mendoza
, Giovanni De Micheli:
Synchronous versus asynchronous modeling of gene regulatory networks. Bioinform. 24(17): 1917-1925 (2008) - [j7]Jacques Rougemont, Arnaud Amzallag
, Christian Iseli
, Laurent Farinelli, Ioannis Xenarios
, Felix Naef
:
Probabilistic base calling of Solexa sequencing data. BMC Bioinform. 9 (2008) - [j6]Sébastien Moretti
, Andreas Wilm
, Desmond G. Higgins, Ioannis Xenarios
, Cédric Notredame
:
R-Coffee: a web server for accurately aligning noncoding RNA sequences. Nucleic Acids Res. 36(Web-Server-Issue): 10-13 (2008) - 2007
- [j5]Alessandro Di Cara, Abhishek Garg, Giovanni De Micheli
, Ioannis Xenarios
, Luis Mendoza
:
Dynamic simulation of regulatory networks using SQUAD. BMC Bioinform. 8 (2007) - [c1]Abhishek Garg, Ioannis Xenarios, Luis Mendoza, Giovanni De Micheli:
An Efficient Method for Dynamic Analysis of Gene Regulatory Networks and in silico Gene Perturbation Experiments. RECOMB 2007: 62-76 - 2002
- [j4]Ioannis Xenarios, Lukasz Salwínski
, Xiaoqun Joyce Duan, Patrick Higney, Sul-Min Kim, David S. Eisenberg:
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. Nucleic Acids Res. 30(1): 303-305 (2002) - 2001
- [j3]Edward M. Marcotte
, Ioannis Xenarios, David S. Eisenberg:
Mining literature for protein-protein interactions. Bioinform. 17(4): 359-363 (2001) - [j2]Ioannis Xenarios, Esteban Fernandez
, Lukasz Salwínski
, Xiaoqun Joyce Duan, Michael J. Thompson
, Edward M. Marcotte
, David S. Eisenberg:
DIP: The Database of Interacting Proteins: 2001 update. Nucleic Acids Res. 29(1): 239-241 (2001) - 2000
- [j1]Ioannis Xenarios, Danny W. Rice
, Lukasz Salwínski
, Marisa K. Baron, Edward M. Marcotte
, David S. Eisenberg:
DIP: the Database of Interacting Proteins. Nucleic Acids Res. 28(1): 289-291 (2000)
Coauthor Index
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OpenAlex data
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last updated on 2024-08-14 23:17 CEST by the dblp team
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