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ORCIDDaniel J. Rigden
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- affiliation: University of Liverpool, Institute of Integrative Biology, UK
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Journal Articles
- 2023
[j23]Bowen Song
, Daiyun Huang, Yuxin Zhang, Zhen Wei, Jionglong Su, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng, Kunqi Chen:
m6A-TSHub: Unveiling the Context-specific m6A Methylation and m6A-affecting Mutations in 23 Human Tissues. Genom. Proteom. Bioinform. 21(4): 678-694 (2023)- [j22]Daniel J. Rigden, Xosé M. Fernández:
The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection. Nucleic Acids Res. 51(D1): 1-8 (2023) - [j21]Yuxin Zhang, Jie Jiang, Jiongming Ma, Zhen Wei, Yue Wang, Bowen Song, Jia Meng, Guifang Jia, João Pedro de Magalhães, Daniel J. Rigden, Daiyun Hang, Kunqi Chen:
DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology. Nucleic Acids Res. 51(D1): 106-116 (2023) - [j20]Bowen Song, Xuan Wang, Zhanmin Liang, Jiongming Ma, Daiyun Huang, Yue Wang, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng, Gang Liu, Kunqi Chen, Zhen Wei:
RMDisease V2.0: an updated database of genetic variants that affect RNA modifications with disease and trait implication. Nucleic Acids Res. 51(D1): 1388-1396 (2023) - 2022
- [j19]Daniel J. Rigden, Xosé M. Fernández:
The 2022 Nucleic Acids Research database issue and the online molecular biology database collection. Nucleic Acids Res. 50(D1): 1-10 (2022) - [j18]Jiongming Ma, Bowen Song, Zhen Wei, Daiyun Huang, Yuxin Zhang, Jionglong Su, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng, Kunqi Chen:
m5C-Atlas: a comprehensive database for decoding and annotating the 5-methylcytosine (m5C) epitranscriptome. Nucleic Acids Res. 50(D1): 196-203 (2022) - 2021
- [j17]Bowen Song, Kunqi Chen, Yujiao Tang, Zhen Wei, Jionglong Su, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng:
ConsRM: collection and large-scale prediction of the evolutionarily conserved RNA methylation sites, with implications for the functional epitranscriptome. Briefings Bioinform. 22(6) (2021) - [j16]Filomeno Sánchez Rodríguez, Shahram Mesdaghi, Adam J. Simpkin, J. Javier Burgos-Mármol, David L. Murphy, Ville Uski, Ronan M. Keegan, Daniel J. Rigden:
ConPlot: web-based application for the visualization of protein contact maps integrated with other data. Bioinform. 37(17): 2763-2765 (2021) - [j15]Daniel J. Rigden, Xosé M. Fernández:
The 2021 Nucleic Acids Research database issue and the online molecular biology database collection. Nucleic Acids Res. 49(Database-Issue): D1-D9 (2021) - [j14]Yujiao Tang, Kunqi Chen, Bowen Song, Jiongming Ma, Xiangyu Wu, Qingru Xu, Zhen Wei, Jionglong Su, Gang Liu, Rong Rong, Zhiliang Lu, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng:
m6A-Atlas: a comprehensive knowledgebase for unraveling the N6-methyladenosine (m6A) epitranscriptome. Nucleic Acids Res. 49(Database-Issue): D134-D143 (2021) - [j13]Kunqi Chen, Bowen Song, Yujiao Tang, Zhen Wei, Qingru Xu, Jionglong Su, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng:
RMDisease: a database of genetic variants that affect RNA modifications, with implications for epitranscriptome pathogenesis. Nucleic Acids Res. 49(Database-Issue): D1396-D1404 (2021) - 2020
- [j12]Bowen Song, Yujiao Tang, Kunqi Chen, Zhen Wei, Rong Rong, Zhiliang Lu, Jionglong Su, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng:
m7GHub: deciphering the location, regulation and pathogenesis of internal mRNA N7-methylguanosine (m7G) sites in human. Bioinform. 36(11): 3528-3536 (2020) - [j11]Daniel J. Rigden, Xosé M. Fernández:
The 27th annual Nucleic Acids Research database issue and molecular biology database collection. Nucleic Acids Res. 48(Database-Issue): D1-D8 (2020) - 2019
- [j10]Daniel J. Rigden, Xosé M. Fernández-Suárez:
The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection. Nucleic Acids Res. 47(Database-Issue): D1-D7 (2019) - 2018
- [j9]Daniel J. Rigden, Xosé M. Fernández-Suárez:
The 2018 Nucleic Acids Research database issue and the online molecular biology database collection. Nucleic Acids Res. 46(Database-Issue): D1-D7 (2018) - 2017
- [j8]Felix Simkovic, Jens M. H. Thomas, Daniel J. Rigden:
ConKit: a python interface to contact predictions. Bioinform. 33(14): 2209-2211 (2017) - [j7]Michael Y. Galperin, Xosé M. Fernández-Suárez, Daniel J. Rigden:
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. Nucleic Acids Res. 45(Database-Issue): D1-D11 (2017) - 2016
- [j6]Daniel J. Rigden, Xosé M. Fernández-Suárez, Michael Y. Galperin:
The 2016 database issue of Nucleic Acids Research and an updated molecular biology database collection. Nucleic Acids Res. 44(Database-Issue): 1-6 (2016) - 2015
- [j5]Michael Y. Galperin, Daniel J. Rigden, Xosé M. Fernández-Suárez:
The 2015 Nucleic Acids Research Database Issue and Molecular Biology Database Collection. Nucleic Acids Res. 43(Database-Issue): 1-5 (2015) - 2014
- [j4]Anna Sheydina, Ruth Y. Eberhardt, Daniel J. Rigden, Yuanyuan Chang, Zhanwen Li, Christian M. Zmasek, Herbert L. Axelrod, Adam Godzik:
Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase. BMC Bioinform. 15: 112 (2014) - [j3]Daniel J. Rigden, Ruth Y. Eberhardt, Harry J. Gilbert, Qingping Xu, Yuanyuan Chang, Adam Godzik:
Structure- and context-based analysis of the GxGYxYP family reveals a new putative class of Glycoside Hydrolase. BMC Bioinform. 15: 196 (2014) - [j2]Xosé M. Fernández-Suárez, Daniel J. Rigden, Michael Y. Galperin:
The 2014 Nucleic Acids Research Database Issue and an updated NAR online Molecular Biology Database Collection. Nucleic Acids Res. 42(Database-Issue): 1-6 (2014) - 2008
- [j1]Daniel J. Rigden, Michael Y. Galperin:
Sequence analysis of GerM and SpoVS, uncharacterized bacterial "sporulation" proteins with widespread phylogenetic distribution. Bioinform. 24(16): 1793-1797 (2008)
Coauthor Index
aka: Xosé M. Fernández-Suárez
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