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ORCIDKenji Yasuoka
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2020 – today
- 2024
[j14]Akie Kowaguchi
, Paul E. Brumby, Kenji Yasuoka:
Hysteresis Elimination for an Anisotropic Liquid-Crystal Model via Molecule Design and Replica-Exchange Optimization. J. Chem. Inf. Model. 64(12): 4673-4686 (2024)- 2023
- [j13]Ryo Kawada, Katsuhiro Endo, Kenji Yasuoka, Hidekazu Kojima, Nobuyuki Matubayasi:
Prediction of Water Diffusion in Wide Varieties of Polymers with All-Atom Molecular Dynamics Simulations and Deep Generative Models. J. Chem. Inf. Model. 63(1): 76-86 (2023) - 2022
- [j12]Linyu Peng, Noriyoshi Arai, Kenji Yasuoka:
A stochastic Hamiltonian formulation applied to dissipative particle dynamics. Appl. Math. Comput. 426: 127126 (2022) - [j11]Kiyoshiro Okada, Paul E. Brumby, Kenji Yasuoka:
An Efficient Random Number Generation Method for Molecular Simulation. J. Chem. Inf. Model. 62(1): 71-78 (2022) - [j10]Akie Kowaguchi, Katsuhiro Endo, Paul E. Brumby, Kentaro Nomura, Kenji Yasuoka:
Optimal Replica-Exchange Molecular Simulations in Combination with Evolution Strategies. J. Chem. Inf. Model. 62(24): 6544-6552 (2022) - [i5]Ryo Kawada, Katsuhiro Endo, Daisuke Yuhara, Kenji Yasuoka:
MD-GAN with multi-particle input: the machine learning of long-time molecular behavior from short-time MD data. CoRR abs/2202.00995 (2022) - [i4]Ikki Yasuda, Yusei Kobayashi, Katsuhiro Endo, Yoshihiro Hayakawa, Kazuhiko Fujiwara, Kuniaki Yajima, Noriyoshi Arai, Kenji Yasuoka:
Prediction of transport property via machine learning molecular movements. CoRR abs/2203.03103 (2022) - [i3]Linyu Peng, Noriyoshi Arai, Kenji Yasuoka:
A stochastic Hamiltonian formulation applied to dissipative particle dynamics. CoRR abs/2203.12183 (2022)
2010 – 2019
- 2019
- [i2]Kai Pua, Daisuke Yuhara, Sho Ayuba, Kenji Yasuoka:
Dataflow programming for the analysis of molecular dynamics with AViS, an analysis and visualization software application. CoRR abs/1911.08882 (2019) - 2018
- [c5]Katsuhiro Endo, Katsufumi Tomobe, Kenji Yasuoka:
Multi-Step Time Series Generator for Molecular Dynamics. AAAI 2018: 2192-2199 - 2015
- [j9]Takuma Nozawa, Kazuaki Z. Takahashi, Tetsu Narumi, Kenji Yasuoka:
Comparison of the accuracy of periodic reaction field methods in molecular dynamics simulations of a model liquid crystal system. J. Comput. Chem. 36(32): 2406-2411 (2015) - 2013
- [j8]Rio Yokota, Lorena A. Barba, Tetsu Narumi, Kenji Yasuoka:
Petascale turbulence simulation using a highly parallel fast multipole method on GPUs. Comput. Phys. Commun. 184(3): 445-455 (2013) - 2012
- [j7]Siegfried Höfinger, Angela Acocella, Sergiu C. Pop, Tetsu Narumi, Kenji Yasuoka, Titus Beu, Francesco Zerbetto:
GPU-accelerated computation of electron transfer. J. Comput. Chem. 33(29): 2351-2356 (2012) - [c4]Minoru Oikawa, Atsushi Kawai, Kentaro Nomura, Kenji Yasuoka, Kazuyuki Yoshikawa, Tetsu Narumi:
DS-CUDA: A Middleware to Use Many GPUs in the Cloud Environment. SC Companion 2012: 1207-1214 - 2011
- [j6]Tetsu Narumi, Kenji Yasuoka, Makoto Taiji, Francesco Zerbetto, Siegfried Höfinger:
Fast Calculation of Electrostatic Potentials on the GPU or the ASIC MD-GRAPE-3. Comput. J. 54(7): 1181-1187 (2011) - [i1]Rio Yokota, Tetsu Narumi, Lorena A. Barba, Kenji Yasuoka:
Petascale turbulence simulation using a highly parallel fast multipole method. CoRR abs/1106.5273 (2011)
2000 – 2009
- 2009
- [j5]Rio Yokota, Tetsu Narumi, Ryuji Sakamaki, Shun Kameoka, Shinnosuke Obi, Kenji Yasuoka:
Fast multipole methods on a cluster of GPUs for the meshless simulation of turbulence. Comput. Phys. Commun. 180(11): 2066-2078 (2009) - [j4]Tetsu Narumi, Kenji Yasuoka, Makoto Taiji, Siegfried Höfinger:
Current performance gains from utilizing the GPU or the ASIC MDGRAPE-3 within an enhanced Poisson Boltzmann approach. J. Comput. Chem. 30(14): 2351-2357 (2009) - [c3]Tsuyoshi Hamada, Tetsu Narumi, Rio Yokota, Kenji Yasuoka, Keigo Nitadori, Makoto Taiji:
42 TFlops hierarchical N-body simulations on GPUs with applications in both astrophysics and turbulence. SC 2009 - 2008
- [j3]Tetsu Narumi, Shun Kameoka, Makoto Taiji, Kenji Yasuoka:
Accelerating Molecular Dynamics Simulations on PlayStation 3 Platform Using Virtual-GRAPE Programming Model. SIAM J. Sci. Comput. 30(6): 3108-3125 (2008) - [c2]Tetsu Narumi, Ryuji Sakamaki, Shun Kameoka, Kenji Yasuoka:
Overheads in Accelerating Molecular Dynamics Simulations with GPUs. PDCAT 2008: 143-150 - 2004
- [j2]Bruce G. Elmegreen, Roger H. Koch, Manfred E. Schabes, Tiffany Crawford, Toshikazu Ebisuzaki, Hideaki Furusawa, Tetsu Narumi, Ryutaro Susukita, Kenji Yasuoka:
Simulations of magnetic materials with MDGRAPE-2. IBM J. Res. Dev. 48(2): 199-208 (2004) - 2000
- [j1]Kholmirzo Kholmurodov, William Smith, Kenji Yasuoka, Thomas A. Darden, Toshikazu Ebisuzaki:
A smooth-particle mesh Ewald method for DL_POLY molecular dynamics simulation package on the Fujitsu VPP700. J. Comput. Chem. 21(13): 1187-1191 (2000) - [c1]Tetsu Narumi, Ryutaro Susukita, Takahiro Koishi, Kenji Yasuoka, Hideaki Furusawa, Atsushi Kawai, Toshikazu Ebisuzaki:
1.34 Tflops Molecular Dynamics Simulation for NaCl with a Special-Purpose Computer: MDM. SC 2000: 54
Coauthor Index
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