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Journal Articles
- 2025
[j24]Hsi-Jen Chen, Ming-Da Wu, I-Chung Lo, Darby Tien-Hao Chang:
Exploring the Affordance Effect of Visual Properties Associated with Virtual Keyboard Buttons on Smartphones. Int. J. Hum. Comput. Interact. 41(11): 7092-7111 (2025)- 2019
- [j23]Jhe-Ming Wu, Yu-Chen Liu, Darby Tien-Hao Chang:
SigUNet: signal peptide recognition based on semantic segmentation. BMC Bioinform. 20-S(24): 677 (2019) - 2018
- [j22]Chia-Pin Kang, Hung-Chi Tu, Tzu-Fun Fu, Jhe-Ming Wu, Po-Hsun Chu, Darby Tien-Hao Chang
:
An automatic method to calculate heart rate from zebrafish larval cardiac videos. BMC Bioinform. 19(1): 169:1-169:10 (2018) - 2016
- [j21]Che-Wei Chang, Chai-Wei Chou, Darby Tien-Hao Chang:
CCProf: exploring conformational change profile of proteins. Database J. Biol. Databases Curation 2016 (2016) - [j20]Wei-Sheng Wu, Fu-Jou Lai, Bor-Wen Tu, Darby Tien-Hao Chang:
CoopTFD: a repository for predicted yeast cooperative transcription factor pairs. Database J. Biol. Databases Curation 2016 (2016) - 2015
- [j19]Che-Wei Chang, Wen-Bin Lee, An Chen-Deng, Tsunglin Liu, Joseph T. Tseng, Darby Tien-Hao Chang:
Light-RCV: a lightweight read coverage viewer for next generation sequencing data. BMC Bioinform. 16(S18): S11 (2015) - 2014
- [j18]Wei-Sheng Wu, Ming-Liang Wei, Chia-Ming Yeh, Darby Tien-Hao Chang:
A regulatory similarity measure using the location information of transcription factor binding sites in Saccharomyces cerevisiae. BMC Syst. Biol. 8(S-5): S9 (2014) - 2012
- [j17]Darby Tien-Hao Chang, Chao-Hsuan Ke, Jung-Hsin Lin, Jung-Hsien Chiang:
AutoBind: automatic extraction of protein-ligand-binding affinity data from biological literature. Bioinform. 28(16): 2162-2168 (2012) - [j16]Darby Tien-Hao Chang, Chi-Yeh Wu, Chen-Yu Fan:
A study on promoter characteristics of head-to-head genes in Saccharomyces cerevisiae. BMC Genom. 13(S-1): S11 (2012) - [j15]Darby Tien-Hao Chang, Tsung-Ju Yao, Chen-Yu Fan, Chih-Yun Chiang, Yi-Han Bai:
AH-DB: collecting protein structure pairs before and after binding. Nucleic Acids Res. 40(Database-Issue): 472-478 (2012) - [j14]Ting-Ying Chien, Chih-Kang Lin, Chih-Wei Lin, Yi-Zhong Weng, Chien-Yu Chen, Darby Tien-Hao Chang:
DBD2BS: connecting a DNA-binding protein with its binding sites. Nucleic Acids Res. 40(Web-Server-Issue): 173-179 (2012) - 2011
- [j13]Yi-Zhong Weng, Darby Tien-Hao Chang, Yu-Feng Huang, Chih-Wei Lin:
A study on the flexibility of enzyme active sites. BMC Bioinform. 12(S-1): S32 (2011) - [j12]Darby Tien-Hao Chang, Cheng-Yi Huang, Chi-Yeh Wu, Wei-Sheng Wu:
YPA: an integrated repository of promoter features in Saccharomyces cerevisiae. Nucleic Acids Res. 39(Database-Issue): 647-652 (2011) - 2010
- [j11]Darby Tien-Hao Chang, Yu-Tang Syu, Po-Chang Lin:
Predicting the protein-protein interactions using primary structures with predicted protein surface. BMC Bioinform. 11(S-1): 3 (2010) - [j10]Chih-Hung Hsieh, Darby Tien-Hao Chang, Cheng-Hao Hsueh, Chi-Yeh Wu, Yen-Jen Oyang:
Predicting microRNA precursors with a generalized Gaussian components based density estimation algorithm. BMC Bioinform. 11(S-1): 52 (2010) - [j9]Chi-Yuan Yu, Lih-Ching Chou, Darby Tien-Hao Chang:
Predicting protein-protein interactions in unbalanced data using the primary structure of proteins. BMC Bioinform. 11: 167 (2010) - [j8]Darby Tien-Hao Chang, Jung-Hsin Lin, Chih-Hung Hsieh, Yen-Jen Oyang:
On the Design of Optimization Algorithms for Prediction of Molecular Interactions. Int. J. Artif. Intell. Tools 19(3): 267-280 (2010) - 2009
- [j7]Darby Tien-Hao Chang, Ting-Ying Chien, Chien-Yu Chen:
seeMotif: exploring and visualizing sequence motifs in 3D structures. Nucleic Acids Res. 37(Web-Server-Issue): 552-558 (2009) - 2008
- [j6]Darby Tien-Hao Chang, Hsuan-Yu Huang, Yu-Tang Syu, Chih-Peng Wu:
Real value prediction of protein solvent accessibility using enhanced PSSM features. BMC Bioinform. 9(S-12) (2008) - [j5]Darby Tien-Hao Chang, Chih-Ching Wang, Jian-Wei Chen:
Using a kernel density estimation based classifier to predict species-specific microRNA precursors. BMC Bioinform. 9(S-12) (2008) - [j4]Ting-Ying Chien, Darby Tien-Hao Chang, Chien-Yu Chen, Yi-Zhong Weng, Chen-Ming Hsu:
E1DS: catalytic site prediction based on 1D signatures of concurrent conservation. Nucleic Acids Res. 36(Web-Server-Issue): 291-296 (2008) - 2006
- [j3]Darby Tien-Hao Chang, Yi-Zhong Weng, Jung-Hsin Lin, Ming-Jing Hwang, Yen-Jen Oyang:
Protemot: prediction of protein binding sites with automatically extracted geometrical templates. Nucleic Acids Res. 34(Web-Server-Issue): 303-309 (2006) - 2005
- [j2]Darby Tien-Hao Chang, Yen-Jen Oyang, Jung-Hsin Lin:
MEDock: a web server for efficient prediction of ligand binding sites based on a novel optimization algorithm. Nucleic Acids Res. 33(Web-Server-Issue): 233-238 (2005) - 2004
- [j1]Darby Tien-Hao Chang, Chien-Yu Chen, Wen-Chin Chung, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang:
ProteMiner-SSM: a web server for efficient analysis of similar protein tertiary substructures. Nucleic Acids Res. 32(Web-Server-Issue): 76-82 (2004)
Conference and Workshop Papers
- 2024
- [c10]Kuan-Yu Chen, Ping-Han Chiang, Hsin-Rung Chou, Chih-Sheng Chen, Tien-Hao Chang:
DOFEN: Deep Oblivious Forest ENsemble. NeurIPS 2024 - 2023
- [c9]Kuan-Yu Chen, Ping-Han Chiang, Hsin-Rung Chou, Ting-Wei Chen, Tien-Hao Chang:
Trompt: Towards a Better Deep Neural Network for Tabular Data. ICML 2023: 4392-4434 - 2014
- [c8]Darby Tien-Hao Chang, Guan-Yu Shiu, You-Jie Sun:
Predicting cis-regulatory modules by method integration. ICCA 2014: 491-494 - 2011
- [c7]Tien-Hao Chang, Chih-Yun Chiang, Fung-Wei Lin, Chen-Yu Fan:
Studying disorder-to-order transitions from structural analysis. ICCABS 2011: 52-56 - 2009
- [c6]Darby Tien-Hao Chang, Jung-Hsin Lin, Chih-Hung Hsieh, Yen-Jen Oyang:
On the Design of Optimization Algorithms for Prediction of Molecular Interactions. BIBE 2009: 208-215 - [c5]Chih-Hung Hsieh, Darby Tien-Hao Chang, Yen-Jen Oyang:
Data classification with a generalized Gaussian components based density estimation algorithm. IJCNN 2009: 1259-1266 - 2007
- [c4]Yen-Jen Oyang, Darby Tien-Hao Chang, Yu-Yen Ou, Hao-Geng Hung, Chien-Yu Chen:
Prediction of Protein Secondary Structures with a Novel Kernel Density Estimator. MLMTA 2007: 79-84 - 2005
- [c3]Yen-Jen Oyang, Yu-Yen Ou, Shien-Ching Hwang, Chien-Yu Chen, Darby Tien-Hao Chang:
Data classification with a relaxed model of variable kernel density estimation. IJCNN 2005: 2831-2836 - 2004
- [c2]Darby Tien-Hao Chang, Chien-Yu Chen, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang:
An Efficient Mechanism for Prediction of Protein-Ligand Interactions Based on Analysis of Protein Tertiary Substructures. BIBE 2004: 427-433 - 2003
- [c1]Yen-Jen Oyang, Darby Tien-Hao Chang, Chien-Yu Chen, Shien-Ching Hwang:
Expediting protein structural analysis with an efficient kernel density estimation algorithm. ISMSE 2003: 297-304
Informal and Other Publications
- 2024
- [i2]Kuan-Yu Chen, Ping-Han Chiang, Hsin-Rung Chou, Chih-Sheng Chen, Tien-Hao Chang:
DOFEN: Deep Oblivious Forest ENsemble. CoRR abs/2412.16534 (2024) - 2023
- [i1]Kuan-Yu Chen, Ping-Han Chiang, Hsin-Rung Chou, Ting-Wei Chen, Tien-Hao Chang:
Trompt: Towards a Better Deep Neural Network for Tabular Data. CoRR abs/2305.18446 (2023)
Coauthor Index
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