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ORCIDCarlos J. Camacho
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2010 – 2019
- 2018
[j21]Bentley M. Wingert
, Rick Oerlemans, Carlos J. Camacho:
Optimal affinity ranking for automated virtual screening validated in prospective D3R grand challenges. J. Comput. Aided Mol. Des. 32(1): 287-297 (2018)- [j20]Nicolas A. Pabon, Yan Xia, Samuel K. Estabrooks, Zhaofeng Ye, Amanda K. Herbrand, Evelyn Süß, Ricardo M. Biondi, Victoria A. Assimon, Jason E. Gestwicki, Jeffrey L. Brodsky, Carlos J. Camacho, Ziv Bar-Joseph:
Predicting protein targets for drug-like compounds using transcriptomics. PLoS Comput. Biol. 14(12) (2018) - 2016
- [j19]Zhaofeng Ye, Matthew P. Baumgartner, Bentley M. Wingert, Carlos J. Camacho:
Optimal strategies for virtual screening of induced-fit and flexible target in the 2015 D3R Grand Challenge. J. Comput. Aided Mol. Des. 30(9): 695-706 (2016) - [j18]Matthew P. Baumgartner, Carlos J. Camacho:
Choosing the Optimal Rigid Receptor for Docking and Scoring in the CSAR 2013/2014 Experiment. J. Chem. Inf. Model. 56(6): 1004-1012 (2016) - 2015
- [j17]David Ryan Koes, Carlos J. Camacho:
Indexing volumetric shapes with matching and packing. Knowl. Inf. Syst. 43(1): 157-180 (2015) - 2014
- [j16]David Ryan Koes, Carlos J. Camacho:
Shape-based virtual screening with volumetric aligned molecular shapes. J. Comput. Chem. 35(25): 1824-1834 (2014) - 2013
- [j15]David Ryan Koes, Matthew P. Baumgartner, Carlos J. Camacho:
Lessons Learned in Empirical Scoring with smina from the CSAR 2011 Benchmarking Exercise. J. Chem. Inf. Model. 53(8): 1893-1904 (2013) - 2012
- [j14]David Ryan Koes, Carlos J. Camacho:
Small-molecule inhibitor starting points learned from protein-protein interaction inhibitor structure. Bioinform. 28(6): 784-791 (2012) - [j13]David Ryan Koes, Carlos J. Camacho:
Small-molecule inhibitor starting points learned from protein-protein interaction inhibitor structure. Bioinform. 28(14): 1951 (2012) - [j12]David Ryan Koes, Carlos J. Camacho:
PocketQuery: protein-protein interaction inhibitor starting points from protein-protein interaction structure. Nucleic Acids Res. 40(Web-Server-Issue): 387-392 (2012) - [j11]David Ryan Koes, Carlos J. Camacho:
ZINCPharmer: pharmacophore search of the ZINC database. Nucleic Acids Res. 40(Web-Server-Issue): 409-414 (2012) - 2011
- [j10]David Ryan Koes, Carlos J. Camacho:
Pharmer: Efficient and Exact Pharmacophore Search. J. Chem. Inf. Model. 51(6): 1307-1314 (2011) - 2010
- [j9]N. A. Temiz, Andrew C. Trapp, Oleg A. Prokopyev, Carlos J. Camacho:
Optimization of minimum set of protein-DNA interactions: a quasi exact solution with minimum over-fitting. Bioinform. 26(3): 319-325 (2010) - [j8]Lidio M. C. Meireles, Alexander S. Dömling, Carlos J. Camacho:
ANCHOR: a web server and database for analysis of protein-protein interaction binding pockets for drug discovery. Nucleic Acids Res. 38(Web-Server-Issue): 407-411 (2010)
2000 – 2009
- 2008
- [j7]Carlos J. Camacho, Yasuhiro Katsumata, Dana P. Ascherman:
Structural and Thermodynamic Approach to Peptide Immunogenicity. PLoS Comput. Biol. 4(11) (2008) - 2007
- [j6]P. Christoph Champ, Carlos J. Camacho:
FastContact: a free energy scoring tool for protein-protein complex structures. Nucleic Acids Res. 35(Web-Server-Issue): 556-560 (2007) - 2005
- [j5]Carlos J. Camacho, Chao Zhang:
FastContact: rapid estimate of contact and binding free energies. Bioinform. 21(10): 2534-2536 (2005) - 2004
- [j4]Stephen R. Comeau, David W. Gatchell, Sandor Vajda, Carlos J. Camacho:
ClusPro: an automated docking and discrimination method for the prediction of protein complexes. Bioinform. 20(1): 45-50 (2004) - [j3]Jahnavi C. Prasad, Sandor Vajda, Carlos J. Camacho:
Consensus alignment server for reliable comparative modeling with distant templates. Nucleic Acids Res. 32(Web-Server-Issue): 50-54 (2004) - [j2]Stephen R. Comeau, David W. Gatchell, Sandor Vajda, Carlos J. Camacho:
ClusPro: a fully automated algorithm for protein-protein docking. Nucleic Acids Res. 32(Web-Server-Issue): 96-99 (2004) - [c2]Marta Bueno, Carlos J. Camacho, Javier Sancho:
What Works (and What Doesn't) in Estimating the Change in Free Energy due to Point Mutations in the Protein Interior. Spanish Bioinformatics Conference 2004: 20-22 - 2003
- [j1]Jahnavi C. Prasad, Stephen R. Comeau, Sandor Vajda, Carlos J. Camacho:
Consensus alignment for reliable framework prediction in homology modeling. Bioinform. 19(13): 1682-1691 (2003) - [c1]Jahnavi C. Prasad, Michael Silberstein, Carlos J. Camacho, Sandor Vajda:
Homology Modeling of Proteins Using Multiple Models and Consensus Sequence Alignment. WABI 2003: 389-401
Coauthor Index
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