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Journal Articles
- 2023
[j11]Jakob P. Pettersen
, Sandra Castillo, Paula Jouhten, Eivind Almaas:
Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts. BMC Bioinform. 24(1): 438 (2023)- 2022
- [j10]Maryam Sabzevari, Sándor Szedmák, Merja Penttilä, Paula Jouhten, Juho Rousu:
Strain design optimization using reinforcement learning. PLoS Comput. Biol. 18(6) (2022) - 2014
- [j9]Erno Lindfors, Paula Jouhten, Merja Oja, Eija Rintala, Matej Oresic, Merja Penttilä:
Integration of transcription and flux data reveals molecular paths associated with differences in oxygen-dependent phenotypes of Saccharomyces cerevisiae. BMC Syst. Biol. 8: 16 (2014) - [j8]Esa Pitkänen, Paula Jouhten, Jian Hou, Muhammad Fahad Syed, Peter Blomberg, Jana Kludas, Merja Oja, Liisa Holm, Merja Penttilä, Juho Rousu, Mikko Arvas:
Comparative Genome-Scale Reconstruction of Gapless Metabolic Networks for Present and Ancestral Species. PLoS Comput. Biol. 10(2) (2014) - 2010
- [j7]Subir K. Nandy, Paula Jouhten, Jens Nielsen:
Reconstruction of the yeast protein-protein interaction network involved in nutrient sensing and global metabolic regulation. BMC Syst. Biol. 4: 68 (2010) - [j6]Kristin Baumann, Marc Carnicer, Martin Dragosits, Alexandra Graf, Johannes Stadlmann, Paula Jouhten, Hannu Maaheimo, Brigitte Gasser, Joan Albiol, Diethard Mattanovich, Pau Ferrer:
A multi-level study of recombinant Pichia pastoris in different oxygen conditions. BMC Syst. Biol. 4: 141 (2010) - 2009
- [j5]Esa Pitkänen, Paula Jouhten, Juho Rousu:
Inferring branching pathways in genome-scale metabolic networks. BMC Syst. Biol. 3: 103 (2009) - [j4]Paula Jouhten, Esa Pitkänen, Tiina Pakula, Markku Saloheimo, Merja Penttilä, Hannu Maaheimo:
13C-metabolic flux ratio and novel carbon path analyses confirmed that Trichoderma reesei uses primarily the respirative pathway also on the preferred carbon source glucose. BMC Syst. Biol. 3: 104 (2009) - 2008
- [j3]Ari Rantanen, Juho Rousu, Paula Jouhten, Nicola Zamboni, Hannu Maaheimo, Esko Ukkonen:
An analytic and systematic framework for estimating metabolic flux ratios from 13C tracer experiments. BMC Bioinform. 9 (2008) - [j2]Paula Jouhten, Eija Rintala, Anne Huuskonen, Anu Tamminen, Mervi Toivari, Marilyn Wiebe, Laura Ruohonen, Merja Penttilä, Hannu Maaheimo:
Oxygen dependence of metabolic fluxes and energy generation of Saccharomyces cerevisiae CEN.PK113-1A. BMC Syst. Biol. 2: 60 (2008) - [j1]Esa Pitkänen, Arto Åkerlund, Ari Rantanen, Paula Jouhten, Esko Ukkonen:
ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis. J. Integr. Bioinform. 5(2) (2008)
Coauthor Index
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