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ORCIDNir Ben-Tal
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2020 – today
- 2021
[j28]Michael Bernhofer
, Christian Dallago, Timothy Karl, Venkata P. Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, László Kaján, Seán I. O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard Rost:
PredictProtein - Predicting Protein Structure and Function for 29 Years. Nucleic Acids Res. 49(Webserver-Issue): 535-540 (2021)- 2020
- [j27]Maria Littmann, Katharina Selig, Liel Cohen-Lavi, Yotam Frank, Peter Hönigschmid, Evans Kataka, Anja Mösch, Kun Qian, Avihai Ron, Sebastian Schmid, Adam Sorbie, Liran Szlak, Ayana Dagan-Wiener, Nir Ben-Tal, Masha Y. Niv, Daniel Razansky, Björn W. Schuller, Donna P. Ankerst, Tomer Hertz, Burkhard Rost:
Validity of machine learning in biology and medicine increased through collaborations across fields of expertise. Nat. Mach. Intell. 2(1): 18-24 (2020)
2010 – 2019
- 2019
- [j26]Ludovica Montanucci, Pier Luigi Martelli, Nir Ben-Tal, Piero Fariselli:
A natural upper bound to the accuracy of predicting protein stability changes upon mutations. Bioinform. 35(9): 1513-1517 (2019) - [j25]Ludovica Montanucci, Emidio Capriotti, Yotam Frank, Nir Ben-Tal, Piero Fariselli:
DDGun: an untrained method for the prediction of protein stability changes upon single and multiple point variations. BMC Bioinform. 20-S(14): 335:1-335:10 (2019) - 2016
- [j24]Haim Ashkenazy, Shiran Abadi, Eric Martz, Ofer Chay, Itay Mayrose, Tal Pupko, Nir Ben-Tal:
ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules. Nucleic Acids Res. 44(Webserver-Issue): W344-W350 (2016) - [j23]Matthew A. Oberhardt, Raphy Zarecki, Leah Reshef, Fangfang Xia, Miquel Duran-Frigola, Rachel Schreiber, Christopher S. Henry, Nir Ben-Tal, Daniel J. Dwyer, Uri Gophna, Eytan Ruppin:
Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5'-Phosphate Production in E. coli. PLoS Comput. Biol. 12(1) (2016) - 2015
- [j22]Aya Narunsky, Haim Ashkenazy, Rachel Kolodny, Nir Ben-Tal:
Using ConTemplate and the PDB to explore conformational space: on the detection of rare protein conformations. BMC Bioinform. 16(S-3): A3 (2015) - [j21]Seren Soner, Pemra Ozbek, José Ignacio Garzón, Nir Ben-Tal, Turkan Haliloglu:
DynaFace: Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions Based on the Complex's Dynamics. PLoS Comput. Biol. 11(10) (2015) - 2014
- [j20]Aya Narunsky, Nir Ben-Tal:
ConTemplate: exploiting the protein databank to propose ensemble of conformations of a query protein of known structure. BMC Bioinform. 15(S-3): A5 (2014) - [j19]Guy Yachdav, Edda Kloppmann, László Kaján, Maximilian Hecht, Tatyana Goldberg, Tobias Hamp, Peter Hönigschmid, Andrea Schafferhans, Manfred Roos, Michael Bernhofer, Lothar Richter, Haim Ashkenazy, Marco Punta, Avner Schlessinger, Yana Bromberg, Reinhard Schneider, Gerrit Vriend, Chris Sander, Nir Ben-Tal, Burkhard Rost:
PredictProtein - an open resource for online prediction of protein structural and functional features. Nucleic Acids Res. 42(Webserver-Issue): 337-343 (2014) - [j18]Yana Gofman, Charlotta Schärfe, Debora S. Marks, Turkan Haliloglu, Nir Ben-Tal:
Structure, Dynamics and Implied Gating Mechanism of a Human Cyclic Nucleotide-Gated Channel. PLoS Comput. Biol. 10(12) (2014) - 2013
- [j17]Nir Ben-Tal:
Editorial. Bioinform. 29(13): 1-2 (2013) - 2012
- [j16]James A. R. Dalton, Ori Kalid, Maya Schushan, Nir Ben-Tal, Jordi Villà-Freixa:
New Model of Cystic Fibrosis Transmembrane Conductance Regulator Proposes Active Channel-like Conformation. J. Chem. Inf. Model. 52(7): 1842-1853 (2012) - [j15]Yana Gofman, Turkan Haliloglu, Nir Ben-Tal:
Monte Carlo simulations of peptide-membrane interactions with the MCPep web server. Nucleic Acids Res. 40(Web-Server-Issue): 358-363 (2012) - 2011
- [j14]Gilad Wainreb, Lior Wolf, Haim Ashkenazy, Yves Dehouck, Nir Ben-Tal:
Protein stability: a single recorded mutation aids in predicting the effects of other mutations in the same amino acid site. Bioinform. 27(23): 3286-3292 (2011) - 2010
- [j13]Guy Nimrod, Maya Schushan, András Szilágyi, Christina S. Leslie, Nir Ben-Tal:
iDBPs: a web server for the identification of DNA binding proteins. Bioinform. 26(5): 692-693 (2010) - [j12]Matan Kalman, Nir Ben-Tal:
Quality assessment of protein model-structures using evolutionary conservation. Bioinform. 26(10): 1299-1307 (2010) - [j11]Gilad Wainreb, Haim Ashkenazy, Yana Bromberg, Alina Starovolsky-Shitrit, Turkan Haliloglu, Eytan Ruppin, Karen B. Avraham, Burkhard Rost, Nir Ben-Tal:
MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data. Nucleic Acids Res. 38(Web-Server-Issue): 523-528 (2010) - [j10]Haim Ashkenazy, Elana Erez, Eric Martz, Tal Pupko, Nir Ben-Tal:
ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids. Nucleic Acids Res. 38(Web-Server-Issue): 529-533 (2010)
2000 – 2009
- 2009
- [j9]Ori Kalid, Nir Ben-Tal:
Study of MDM2 Binding to p53-Analogues: Affinity, Helicity, and Applicability to Drug Design. J. Chem. Inf. Model. 49(4): 865-876 (2009) - [j8]Ofir Goldenberg, Elana Erez, Guy Nimrod, Nir Ben-Tal:
The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structures. Nucleic Acids Res. 37(Database-Issue): 323-327 (2009) - 2008
- [j7]Turkan Haliloglu, Nir Ben-Tal:
Cooperative Transition between Open and Closed Conformations in Potassium Channels. PLoS Comput. Biol. 4(8) (2008) - 2007
- [j6]Angela Enosh, Sarel Jacob Fleishman, Nir Ben-Tal, Dan Halperin:
Prediction and simulation of motion in pairs of transmembrane alpha-helices. Bioinform. 23(2): 212-218 (2007) - [j5]Angelika Fuchs, Antonio J. Martin-Galiano, Matan Kalman, Sarel Jacob Fleishman, Nir Ben-Tal, Dmitrij Frishman:
Co-evolving residues in membrane proteins. Bioinform. 23(24): 3312-3319 (2007) - 2005
- [j4]Roee Gutman, Carine Berezin, Roy Wollman, Yossi Rosenberg, Nir Ben-Tal:
QuasiMotiFinder: protein annotation by searching for evolutionarily conserved motif-like patterns. Nucleic Acids Res. 33(Web-Server-Issue): 255-261 (2005) - [j3]Meytal Landau, Itay Mayrose, Yossi Rosenberg, Fabian Glaser, Eric Martz, Tal Pupko, Nir Ben-Tal:
ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures. Nucleic Acids Res. 33(Web-Server-Issue): 299-302 (2005) - [c3]Guy Nimrod, Fabian Glaser, David Steinberg, Nir Ben-Tal, Tal Pupko:
In silico identification of functional regions in proteins. ISMB (Supplement of Bioinformatics) 2005: 328-337 - 2004
- [j2]Carine Berezin, Fabian Glaser, Josef Rosenberg, Inbal Paz, Tal Pupko, Piero Fariselli, Rita Casadio, Nir Ben-Tal:
ConSeq: the identification of functionally and structurally important residues in protein sequences. Bioinform. 20(8): 1322-1324 (2004) - [c2]Angela Enosh, Sarel Jacob Fleishman, Nir Ben-Tal, Dan Halperin:
Assigning transmembrane segments to helices in intermediate-resolution structures. ISMB/ECCB (Supplement of Bioinformatics) 2004: 122-129 - 2003
- [j1]Fabian Glaser, Tal Pupko, Inbal Paz, Rachel E. Bell, Dalit Bechor-Shental, Eric Martz, Nir Ben-Tal:
ConSurf: Identification of Functional Regions in Proteins by Surface-Mapping of Phylogenetic Information. Bioinform. 19(1): 163-164 (2003) - 2002
- [c1]Tal Pupko, Rachel E. Bell, Itay Mayrose, Fabian Glaser, Nir Ben-Tal:
Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues. ISMB 2002: 71-77
Coauthor Index
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