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ORCIDIvelin Georgiev
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2010 – 2019
- 2019
[j10]Nagarajan Raju
, Ian Setliff, Ivelin S. Georgiev:
NFPws: a web server for delineating broadly neutralizing antibody specificities from serum HIV-1 neutralization data. Bioinform. 35(18): 3502-3504 (2019)- [j9]Craig A. Magaret, David C. Benkeser, Brian D. Williamson, Bhavesh Borate, Lindsay N. Carpp, Ivelin S. Georgiev, Ian Setliff, Adam S. Dingens, Noah Simon, Marco Carone, Christopher Simpkins, David C. Montefiori, Galit Alter, Wen-Han Yu, Michal Juraska, Paul Thatcher Edlefsen, Shelly Karuna, Nyaradzo M. Mgodi, Srilatha Edugupanti, Peter B. Gilbert:
Prediction of VRC01 neutralization sensitivity by HIV-1 gp160 sequence features. PLoS Comput. Biol. 15(4) (2019) - 2017
- [j8]Swati Jain, Jonathan D. Jou, Ivelin S. Georgiev, Bruce Randall Donald:
A critical analysis of computational protein design with sparse residue interaction graphs. PLoS Comput. Biol. 13(3) (2017) - 2016
- [j7]Jonathan D. Jou, Swati Jain, Ivelin Georgiev, Bruce Randall Donald:
BWM*: A Novel, Provable, Ensemble-based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design. J. Comput. Biol. 23(6): 413-424 (2016) - 2015
- [j6]Paul Thatcher Edlefsen, Morgane Rolland, Tomer Hertz, Sodsai Tovanabutra, Andrew J. Gartland, Allan C. deCamp, Craig A. Magaret, Hasan Ahmed, Raphael Gottardo, Michal Juraska, Connor McCoy, Brendan B. Larsen, Eric Sanders-Buell, Chris Carrico, Sergey Menis, Meera Bose, Miguel A. Arroyo, Robert J. O'Connell, Sorachai Nitayaphan, Punnee Pitisuttithum, Jaranit Kaewkungwal, Supachai Rerks-Ngarm, Merlin L. Robb, Tatsiana Kirys, Ivelin Georgiev, Peter D. Kwong, Konrad Scheffler, Sergei L. Kosakovsky Pond, Jonathan M. Carlson, Nelson Michael, William R. Schief, James I. Mullins, Jerome H. Kim, Peter B. Gilbert:
: Comprehensive Sieve Analysis of Breakthrough HIV-1 Sequences in the RV144 Vaccine Efficacy Trial. PLoS Comput. Biol. 11(2) (2015) - [c5]Jonathan D. Jou, Swati Jain, Ivelin Georgiev, Bruce Randall Donald:
BWM*: A Novel, Provable, Ensemble-Based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design. RECOMB 2015: 154-166 - 2014
- [j5]Gwo-Yu Chuang, David Liou, Peter D. Kwong, Ivelin Georgiev:
NEP: web server for epitope prediction based on antibody neutralization of viral strains with diverse sequences. Nucleic Acids Res. 42(Webserver-Issue): 64-71 (2014) - [j4]Marie Pancera, Tongqing Zhou, Aliaksandr Druz, Ivelin S. Georgiev, Cinque S. Soto, Jason Gorman, Jinghe Huang, Priyamvada Acharya, Gwo-Yu Chuang, Gilad Ofek, Guillaume B. E. Stewart-Jones, Jonathan Stuckey, Robert T. Bailer, M. Gordon Joyce, Mark K. Louder, Nancy Tumba, Yongping Yang, Baoshan Zhang, Myron S. Cohen, Barton F. Haynes, John R. Mascola, Lynn Morris, James B. Munro, Scott C. Blanchard, Walther Mothes, Mark Connors, Peter D. Kwong:
Structure and immune recognition of trimeric pre-fusion HIV-1 Env. Nat. 514(7523): 455-461 (2014) - 2012
- [j3]Gwo-Yu Chuang, Jeffrey C. Boyington, M. Gordon Joyce, Jiang Zhu, Gary J. Nabel, Peter D. Kwong, Ivelin Georgiev:
Computational prediction of N-linked glycosylation incorporating structural properties and patterns. Bioinform. 28(17): 2249-2255 (2012) - [j2]Daniel A. Keedy, Ivelin Georgiev, Edward B. Triplett, Bruce Randall Donald, David C. Richardson, Jane S. Richardson:
The Role of Local Backrub Motions in Evolved and Designed Mutations. PLoS Comput. Biol. 8(8) (2012)
2000 – 2009
- 2009
- [b1]Ivelin S. Georgiev:
Novel Algorithms for Computational Protein Design, with Applications to Enzyme Redesign and Small-Molecule Inhibitor Design. Duke University, Durham, NC, USA, 2009 - 2008
- [j1]Ivelin Georgiev, Ryan H. Lilien, Bruce Randall Donald:
The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles. J. Comput. Chem. 29(10): 1527-1542 (2008) - [c4]Ivelin Georgiev, Daniel A. Keedy, Jane S. Richardson, David C. Richardson, Bruce Randall Donald:
Algorithm for backrub motions in protein design. ISMB 2008: 196-204 - 2007
- [c3]Ivelin Georgiev, Bruce Randall Donald:
Dead-End Elimination with Backbone Flexibility. ISMB/ECCB (Supplement of Bioinformatics) 2007: 185-194 - 2006
- [c2]Ivelin Georgiev, Ryan H. Lilien, Bruce Randall Donald:
Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design. ISMB (Supplement of Bioinformatics) 2006: 174-183 - [c1]Ivelin Georgiev, Ryan H. Lilien, Bruce Randall Donald:
A Novel Minimized Dead-End Elimination Criterion and Its Application to Protein Redesign in a Hybrid Scoring and Search Algorithm for Computing Partition Functions over Molecular Ensembles. RECOMB 2006: 530-545
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