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Journal Articles
- 2018
[j9]Nima Aghaeepour, Erin F. Simonds, David J. H. F. Knapp
, Robert V. Bruggner, Karen Sachs, Anthony Culos, Pier Federico Gherardini, Nikolay Samusik, Gabriela K. Fragiadakis, Sean Bendall, Brice Gaudilliere, Martin S. Angst, Connie J. Eaves, William A. Weiss, Wendy J. Fantl, Garry P. Nolan:
GateFinder: projection-based gating strategy optimization for flow and mass cytometry. Bioinform. 34(23): 4131-4133 (2018)- 2012
- [j8]Valerio Bianchi, Pier Federico Gherardini, Manuela Helmer-Citterich, Gabriele Ausiello:
Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities. BMC Bioinform. 13(S-4): S17 (2012) - 2011
- [j7]Andreas Zanzoni, Daniel Carbajo, Francesca Diella, Pier Federico Gherardini, Anna Tramontano, Manuela Helmer-Citterich, Allegra Via:
Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites. Nucleic Acids Res. 39(Database-Issue): 268-271 (2011) - [j6]Luca Parca, Iolanda Mangone, Pier Federico Gherardini, Gabriele Ausiello, Manuela Helmer-Citterich:
Phosfinder: a web server for the identification of phosphate-binding sites on protein structures. Nucleic Acids Res. 39(Web-Server-Issue): 278-282 (2011) - 2009
- [j5]Gabriele Ausiello, Pier Federico Gherardini, Elena Gatti, Ottaviano Incani, Manuela Helmer-Citterich:
Structural motifs recurring in different folds recognize the same ligand fragments. BMC Bioinform. 10 (2009) - 2008
- [j4]Gabriele Ausiello, Pier Federico Gherardini, Paolo Marcatili, Anna Tramontano, Allegra Via, Manuela Helmer-Citterich:
FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures. BMC Bioinform. 9(S-2) (2008) - 2007
- [j3]Allegra Via, Pier Federico Gherardini, Enrico Ferraro, Gabriele Ausiello, Gianpaolo Scalia Tomba, Manuela Helmer-Citterich:
False occurrences of functional motifs in protein sequences highlight evolutionary constraints. BMC Bioinform. 8 (2007) - [j2]Andreas Zanzoni, Gabriele Ausiello, Allegra Via, Pier Federico Gherardini, Manuela Helmer-Citterich:
Phospho3D: a database of three-dimensional structures of protein phosphorylation sites. Nucleic Acids Res. 35(Database-Issue): 229-231 (2007) - [j1]Allegra Via, Daniele Peluso, Pier Federico Gherardini, Emanuele de Rinaldis, Teresa Colombo, Gabriele Ausiello, Manuela Helmer-Citterich:
3dLOGO: a web server for the identification, analysis and use of conserved protein substructures. Nucleic Acids Res. 35(Web-Server-Issue): 416-419 (2007)
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