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Journal Articles
- 2024
[j12]Paul F. R. Wilson
, Mohamed Harmanani, Minh Nguyen Nhat To, Mahdi Gilany, Amoon Jamzad, Fahimeh Fooladgar, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
Toward confident prostate cancer detection using ultrasound: a multi-center study. Int. J. Comput. Assist. Radiol. Surg. 19(5): 841-849 (2024)- [j11]Minh Nguyen Nhat To, Fahimeh Fooladgar, Paul F. R. Wilson, Mohamed Harmanani, Mahdi Gilany, Samira Sojoudi, Amoon Jamzad, Silvia D. Chang, Peter C. Black, Parvin Mousavi, Purang Abolmaesumi:
LensePro: label noise-tolerant prototype-based network for improving cancer detection in prostate ultrasound with limited annotations. Int. J. Comput. Assist. Radiol. Surg. 19(6): 1121-1128 (2024) - [j10]Laura Connolly, Fahimeh Fooladgar, Amoon Jamzad, Martin Kaufmann, Ayesha Syeda, Kevin Yi Mi Ren, Purang Abolmaesumi, John F. Rudan, Doug McKay, Gabor Fichtinger, Parvin Mousavi:
ImSpect: Image-driven self-supervised learning for surgical margin evaluation with mass spectrometry. Int. J. Comput. Assist. Radiol. Surg. 19(6): 1129-1136 (2024) - [j9]Chris Yeung, Tamas Ungi, Zoe Hu, Amoon Jamzad, Martin Kaufmann, Ross Walker, Shaila Merchant, Cecil Jay Engel, Doris Jabs, John F. Rudan, Parvin Mousavi, Gabor Fichtinger:
From quantitative metrics to clinical success: assessing the utility of deep learning for tumor segmentation in breast surgery. Int. J. Comput. Assist. Radiol. Surg. 19(6): 1193-1201 (2024) - 2023
- [j8]Mahdi Gilany, Paul F. R. Wilson, Andrea Perera-Ortega, Amoon Jamzad, Minh Nguyen Nhat To, Fahimeh Fooladgar, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
TRUSformer: improving prostate cancer detection from micro-ultrasound using attention and self-supervision. Int. J. Comput. Assist. Radiol. Surg. 18(7): 1193-1200 (2023) - 2022
- [j7]Fahimeh Fooladgar, Amoon Jamzad, Laura Connolly, Alice M. L. Santilli, Martin Kaufmann, Kevin Yi Mi Ren, Purang Abolmaesumi, John F. Rudan, Doug McKay, Gabor Fichtinger, Parvin Mousavi:
Uncertainty estimation for margin detection in cancer surgery using mass spectrometry. Int. J. Comput. Assist. Radiol. Surg. 17(12): 2305-2313 (2022) - [j6]Joshua Ehrlich, Amoon Jamzad, Mark Asselin, Jessica Robin Rodgers, Martin Kaufmann, Tamás Haidegger, John F. Rudan, Parvin Mousavi, Gabor Fichtinger, Tamas Ungi:
Sensor-Based Automated Detection of Electrosurgical Cautery States. Sensors 22(15): 5808 (2022) - 2021
- [j5]Alice M. L. Santilli, Amoon Jamzad, Alireza Sedghi, Martin Kaufmann, Kathryn Logan, Julie Wallis, Kevin Yi Mi Ren, Natasja N. Y. Janssen, Shaila Merchant, Cecil Jay Engel, Doug McKay, Sonal Varma, Ami Wang, Gabor Fichtinger, John F. Rudan, Parvin Mousavi:
Domain adaptation and self-supervised learning for surgical margin detection. Int. J. Comput. Assist. Radiol. Surg. 16(5): 861-869 (2021) - [j4]Laura Connolly, Amoon Jamzad, Martin Kaufmann, Catriona E. Farquharson, Kevin Yi Mi Ren, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
Combined Mass Spectrometry and Histopathology Imaging for Perioperative Tissue Assessment in Cancer Surgery. J. Imaging 7(10): 203 (2021) - 2020
- [j3]Alice M. L. Santilli, Amoon Jamzad, Natasja N. Y. Janssen, Martin Kaufmann, Laura Connolly, Kaitlin Vanderbeck, Ami Wang, Doug McKay, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
Perioperative margin detection in basal cell carcinoma using a deep learning framework: a feasibility study. Int. J. Comput. Assist. Radiol. Surg. 15(5): 887-896 (2020) - [j2]Alireza Sedghi, Alireza Mehrtash, Amoon Jamzad, Amel Amalou, William M. Wells III, Tina Kapur, Jin Tae Kwak, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Bradford J. Wood, Sheng Xu, Purang Abolmaesumi, Parvin Mousavi:
Improving detection of prostate cancer foci via information fusion of MRI and temporal enhanced ultrasound. Int. J. Comput. Assist. Radiol. Surg. 15(7): 1215-1223 (2020) - [j1]Natasja N. Y. Janssen, Martin Kaufmann, Alice M. L. Santilli, Amoon Jamzad, Kaitlin Vanderbeck, Kevin Yi Mi Ren, Tamas Ungi, Parvin Mousavi, John F. Rudan, Doug McKay, Ami Wang, Gabor Fichtinger:
Navigated tissue characterization during skin cancer surgery. Int. J. Comput. Assist. Radiol. Surg. 15(10): 1665-1672 (2020)
Conference and Workshop Papers
- 2024
- [c25]Paul F. R. Wilson, Minh Nguyen Nhat To, Amoon Jamzad, Mahdi Gilany, Mohamed Harmanani, Tarek Elghareb, Fahimeh Fooladgar, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
ProstNFound: Integrating Foundation Models with Ultrasound Domain Knowledge and Clinical Context for Robust Prostate Cancer Detection. MICCAI (6) 2024: 499-509 - [c24]Mahdi Gilany, Mohamed Harmanani, Paul F. R. Wilson, Minh Nguyen Nhat To, Amoon Jamzad, Fahimeh Fooladgar, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
Calibrated Diverse Ensemble Entropy Minimization for Robust Test-Time Adaptation in Prostate Cancer Detection. MLMI@MICCAI (1) 2024: 361-371 - 2023
- [c23]Amoon Jamzad, Fahimeh Fooladgar, Laura Connolly, Dilakshan Srikanthan, Ayesha Syeda, Martin Kaufmann, Kevin Yi Mi Ren, Shaila Merchant, Cecil Jay Engel, Sonal Varma, Gabor Fichtinger, John F. Rudan, Parvin Mousavi:
Bridging Ex-Vivo Training and Intra-operative Deployment for Surgical Margin Assessment with Evidential Graph Transformer. MICCAI (7) 2023: 562-571 - [c22]Josh Ehrlich, Chris Yeung, Martin Kaufman, Amoon Jamzad, John F. Rudan, Parvin Mousavi, Gabor Fichtinger, Tamas Ungi:
Determining the time-delay of a mass spectrometry-based tissue sensor. Medical Imaging: Image-Guided Procedures 2023 - [c21]Hanad Elmi, Amoon Jamzad, Mackenzie Sharp, Jessica R. Rodgers, Martin Kaufmann, Tamara Jamaspishvili, Rachael Iseman, David Berman, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
ViPRE: an open-source software implementation for end-to-end analysis of mass spectrometry data. Medical Imaging: Image-Guided Procedures 2023 - [c20]Lucas March, Jessica R. Rodgers, Rebecca Hisey, Amoon Jamzad, Alice M. L. Santilli, Doug McKay, John F. Rudan, Martin Kaufmann, Kevin Yi Mi Ren, Gabor Fichtinger, Parvin Mousavi:
Cautery tool state detection using deep learning on intraoperative surgery videos. Medical Imaging: Image-Guided Procedures 2023 - [c19]David Morton, Laura Connolly, Leah A. Groves, Kyle Sunderland, Amoon Jamzad, John F. Rudan, Gabor Fichtinger, Tamas Ungi, Parvin Mousavi:
Tracked tissue sensing for tumor bed inspection. Medical Imaging: Image-Guided Procedures 2023 - [c18]Dilakshan Srikanthan, Martin Kaufmann, Amoon Jamzad, Ayesha Syeda, Alice M. L. Santilli, Alireza Sedghi, Gabor Fichtinger, Jamie Purzner, John F. Rudan, Teresa Purzner, Parvin Mousavi:
Attention-based multi-instance learning for improved glioblastoma detection using mass spectrometry. Medical Imaging: Image-Guided Procedures 2023 - [c17]Ayesha Syeda, Fahimeh Fooladgar, Amoon Jamzad, Dilakshan Srikanthan, Martin Kaufmann, Kevin Yi Mi Ren, Cecil Jay Engel, Ross Walker, Shaila Merchant, Doug McKay, Sonal Varma, Gabor Fichtinger, John F. Rudan, Parvin Mousavi:
Self-supervised learning and uncertainty estimation for surgical margin detection. Medical Imaging: Image-Guided Procedures 2023 - [c16]Chris Yeung, Joshua Ehrlich, Amoon Jamzad, Martin Kaufmann, John F. Rudan, Cecil Jay Engel, Parvin Mousavi, Tamas Ungi, Gabor Fichtinger:
Cautery trajectory analysis for evaluation of resection margins in breast-conserving surgery. Medical Imaging: Image-Guided Procedures 2023 - 2022
- [c15]Sindhura Thirumal, Amoon Jamzad, Tiziana Cotechini, D. Robert Siemens, Parvin Mousavi:
Automated Cell Phenotyping for Imaging Mass Cytometry. EMBC 2022: 426-429 - [c14]Mahdi Gilany, Paul F. R. Wilson, Amoon Jamzad, Fahimeh Fooladgar, Minh Nguyen Nhat To, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
Towards Confident Detection of Prostate Cancer Using High Resolution Micro-ultrasound. MICCAI (4) 2022: 411-420 - [c13]Laura Connolly, Amoon Jamzad, Arash Nikniazi, Rana Poushimin, Jean-Michel Nunzi, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
Feasibility of combined optical and acoustic imaging for surgical cavity scanning. Medical Imaging: Image-Guided Procedures 2022 - [c12]Lucas March, Jessica Robin Rodgers, Amoon Jamzad, Alice M. L. Santilli, Rebecca Hisey, Doug McKay, John F. Rudan, Martin Kaufmann, Kevin Yi Mi Ren, Gabor Fichtinger, Parvin Mousavi:
Phase recognition and cautery localization in basal cell carcinoma surgical videos. Medical Imaging: Image-Guided Procedures 2022 - 2021
- [c11]Sindhura Thirumal, Amoon Jamzad, Tiziana Cotechini, Charles T. Hindmarch, Céline Hardy, Nathalia Kim, Amber Simpson, Charles H. Graham, David M. Berman, D. Robert Siemens, Parvin Mousavi:
Utility of High-Throughput Imaging Mass Cytometry for Cancer Research: A feasibility study. BHI 2021: 1-4 - [c10]Mahsa Aghaeeaval, Nathaniel Bendahan, Zaitoon Shivji, Carter McInnis, Amoon Jamzad, Lysa Boisse Lomax, Garima Shukla, Parvin Mousavi, Gavin P. Winston:
Prediction of patient survival following postanoxic coma using EEG data and clinical features. EMBC 2021: 997-1000 - [c9]Alice M. L. Santilli, Amoon Jamzad, Alireza Sedghi, Martin Kaufmann, Shaila Merchant, Cecil Jay Engel, Kathryn Logan, Julie Wallis, Natasja N. Y. Janssen, Sonal Varma, Gabor Fichtinger, John F. Rudan, Parvin Mousavi:
Self-Supervised Learning For Detection Of Breast Cancer In Surgical Margins With Limited Data. ISBI 2021: 980-984 - [c8]Amoon Jamzad, Alice M. L. Santilli, Faranak Akbarifar, Martin Kaufmann, Kathryn Logan, Julie Wallis, Kevin Yi Mi Ren, Shaila Merchant, Cecil Jay Engel, Sonal Varma, Gabor Fichtinger, John F. Rudan, Parvin Mousavi:
Graph Transformers for Characterization and Interpretation of Surgical Margins. MICCAI (7) 2021: 88-97 - [c7]Faranak Akbarifar, Amoon Jamzad, Alice M. L. Santilli, M. Kauffman, Natasja N. Y. Janssen, Laura Connolly, Kevin Yi Mi Ren, Kaitlin Vanderbeck, Ami Wang, Doug McKay, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
Graph-based analysis of mass spectrometry data for tissue characterization with application in basal cell carcinoma surgery. Medical Imaging: Image-Guided Procedures 2021 - [c6]Brian Chen, Golara Javadi, Amoon Jamzad, Alexander Hamilton, Stephanie Sibley, Purang Abolmaesumi, David Maslove, Parvin Mousavi:
Detecting Atrial Fibrillation in ICU Telemetry data with Weak Labels. MLHC 2021: 176-195 - 2020
- [c5]Justin Gerolami, Amoon Jamzad, Sijia Li, Sharareh Bayat, Purang Abolmaesumi, Parvin Mousavi:
Soft Tissue Characterization with Temporal Enhanced Ultrasound through Periodic Manipulation of Point Spread Function: A Feasibility Study. EMBC 2020: 78-81 - [c4]Amoon Jamzad, Alireza Sedghi, Alice M. L. Santilli, Natasja N. Y. Janssen, Martin Kaufmann, Kevin Yi Mi Ren, Kaitlin Vanderbeck, Ami Wang, Doug McKay, John F. Rudan, Gabor Fichtinger, Parvin Mousavi:
Improved Resection Margins in Surgical Oncology Using Intraoperative Mass Spectrometry. MICCAI (3) 2020: 44-53 - [c3]Laura Connolly, Amoon Jamzad, Martin Kaufmann, Rachel Rubino, Alireza Sedghi, Tamas Ungi, Mark Asselin, Scott Yam, John F. Rudan, Christopher Nicol, Gabor Fichtinger, Parvin Mousavi:
Classification of tumor signatures from electrosurgical vapors using mass spectrometry and machine learning: a feasibility study. Medical Imaging: Image-Guided Procedures 2020: 113150Q - [c2]Lauren Yates, Laura Connolly, Amoon Jamzad, Mark Asselin, Rachel Rubino, Scott Yam, Tamas Ungi, Andras Lasso, Christopher Nicol, Parvin Mousavi, Gabor Fichtinger:
Robotic tissue scanning with biophotonic probe. Medical Imaging: Image-Guided Procedures 2020: 1131519 - 2011
- [c1]Amoon Jamzad, Seyed Kamaledin Setarehdan:
Simulation of the twinkling artifact in color flow Doppler sonography: A phase noise hypothesis validation. ICSIPA 2011: 22-27
Informal and Other Publications
- 2024
- [i6]Mohamed Harmanani, Paul F. R. Wilson, Fahimeh Fooladgar, Amoon Jamzad, Mahdi Gilany, Minh Nguyen Nhat To, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
Benchmarking Image Transformers for Prostate Cancer Detection from Ultrasound Data. CoRR abs/2403.18233 (2024) - [i5]Mahdi Gilany, Mohamed Harmanani, Paul F. R. Wilson, Minh Nguyen Nhat To, Amoon Jamzad, Fahimeh Fooladgar, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
Calibrated Diverse Ensemble Entropy Minimization for Robust Test-Time Adaptation in Prostate Cancer Detection. CoRR abs/2407.12697 (2024) - 2023
- [i4]Mahdi Gilany, Paul F. R. Wilson, Andrea Perera-Ortega, Amoon Jamzad, Minh Nguyen Nhat To, Fahimeh Fooladgar, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
TRUSformer: Improving Prostate Cancer Detection from Micro-Ultrasound Using Attention and Self-Supervision. CoRR abs/2303.02128 (2023) - [i3]Meng Zhou, Amoon Jamzad, Jason Izard, Alexandre Menard, Robert Siemens, Parvin Mousavi:
Domain Transfer Through Image-to-Image Translation for Uncertainty-Aware Prostate Cancer Classification. CoRR abs/2307.00479 (2023) - 2022
- [i2]Mahdi Gilany, Paul F. R. Wilson, Amoon Jamzad, Fahimeh Fooladgar, Minh Nguyen Nhat To, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
Towards Confident Detection of Prostate Cancer using High Resolution Micro-ultrasound. CoRR abs/2207.10485 (2022) - [i1]Paul F. R. Wilson, Mahdi Gilany, Amoon Jamzad, Fahimeh Fooladgar, Minh Nguyen Nhat To, Brian Wodlinger, Purang Abolmaesumi, Parvin Mousavi:
Self-Supervised Learning with Limited Labeled Data for Prostate Cancer Detection in High Frequency Ultrasound. CoRR abs/2211.00527 (2022)
Coauthor Index
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