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ORCIDStephan H. Bernhart
Person information
- affiliation: University of Leipzig, Interdisciplinary Centre for Bioinformatics (IZBI), Germany
- affiliation: University of Vienna, Institute for Theoretical Chemistry, Austria
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Journal Articles
- 2020
[j14]Gábor Balogh, Stephan H. Bernhart, Peter F. Stadler
, Jana Schor:
A probabilistic version of Sankoff's maximum parsimony algorithm. J. Bioinform. Comput. Biol. 18(1): 2050004:1-2050004:19 (2020)- 2018
- [j13]Gero Doose, Stephan H. Bernhart, Rabea Wagener, Steve Hoffmann:
DIEGO: detection of differential alternative splicing using Aitchison's geometry. Bioinform. 34(6): 1066-1068 (2018) - 2013
- [j12]Ronny Lorenz, Stephan H. Bernhart, Jing Qin, Christian Höner zu Siederdissen, Andrea Tanzer, Fabian Amman, Ivo L. Hofacker, Peter F. Stadler:
2D Meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 10(4): 832-844 (2013) - 2012
- [j11]Ronny Lorenz, Ivo L. Hofacker, Stephan H. Bernhart:
Folding RNA/DNA hybrid duplexes. Bioinform. 28(19): 2530-2531 (2012) - 2011
- [j10]Stephan H. Bernhart, Ulrike Mückstein, Ivo L. Hofacker:
RNA Accessibility in cubic time. Algorithms Mol. Biol. 6: 3 (2011) - [j9]Ronny Lorenz, Stephan H. Bernhart, Christian Höner zu Siederdissen, Hakim Tafer, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker:
ViennaRNA Package 2.0. Algorithms Mol. Biol. 6: 26 (2011) - [j8]Christian Höner zu Siederdissen, Stephan H. Bernhart, Peter F. Stadler, Ivo L. Hofacker:
A folding algorithm for extended RNA secondary structures. Bioinform. 27(13): 129-136 (2011) - 2008
- [j7]Stephan H. Bernhart, Ivo L. Hofacker, Sebastian Will, Andreas R. Gruber, Peter F. Stadler:
RNAalifold: improved consensus structure prediction for RNA alignments. BMC Bioinform. 9 (2008) - [j6]Andreas R. Gruber, Stephan H. Bernhart, Ivo L. Hofacker, Stefan Washietl:
Strategies for measuring evolutionary conservation of RNA secondary structures. BMC Bioinform. 9 (2008) - [j5]Andreas R. Gruber, Ronny Lorenz, Stephan H. Bernhart, Richard Neuböck, Ivo L. Hofacker:
The Vienna RNA Websuite. Nucleic Acids Res. 36(Web-Server-Issue): 70-74 (2008) - 2006
- [j4]Stephan H. Bernhart, Hakim Tafer, Ulrike Mückstein, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker:
Partition function and base pairing probabilities of RNA heterodimers. Algorithms Mol. Biol. 1 (2006) - [j3]Stephan H. Bernhart, Ivo L. Hofacker, Peter F. Stadler:
Local RNA base pairing probabilities in large sequences. Bioinform. 22(5): 614-615 (2006) - [j2]Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. Bernhart, Peter F. Stadler, Ivo L. Hofacker:
Thermodynamics of RNA-RNA binding. Bioinform. 22(10): 1177-1182 (2006) - 2004
- [j1]Ivo L. Hofacker, Stephan H. Bernhart, Peter F. Stadler:
Alignment of RNA base pairing probability matrices. Bioinform. 20(14): 2222-2227 (2004)
Conference and Workshop Papers
- 2013
- [c5]Fabian Amman, Stephan H. Bernhart, Gero Doose, Ivo L. Hofacker, Jing Qin, Peter F. Stadler, Sebastian Will:
The Trouble with Long-Range Base Pairs in RNA Folding. BSB 2013: 1-11 - 2012
- [c4]Ronny Lorenz, Stephan H. Bernhart, Fabian Externbrink, Jing Qin, Christian Höner zu Siederdissen, Fabian Amman, Ivo L. Hofacker, Peter F. Stadler:
RNA Folding Algorithms with G-Quadruplexes. BSB 2012: 49-60 - 2010
- [c3]Andreas R. Gruber, Stephan H. Bernhart, You Zhou, Ivo L. Hofacker:
RNALfoldz: Efficient Prediction of Thermodynamically Stable, Local Secondary Structures. GCB 2010: 11-20 - 2008
- [c2]Ulrike Mückstein, Hakim Tafer, Stephan H. Bernhart, Maribel Hernandez-Rosales, Jörg Vogel, Peter F. Stadler, Ivo L. Hofacker:
Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics. BIRD 2008: 114-127 - 2005
- [c1]Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. Bernhart, Peter F. Stadler, Ivo L. Hofacker:
Thermodynamics of RNA-RNA Binding. German Conference on Bioinformatics 2005: 3-13
Coauthor Index
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