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Journal Articles
- 2023
[j16]Shijia Wang
, Shufei Ge, Benjamin Sobkowiak, Liangliang Wang, Louis Grandjean, Caroline Colijn, Lloyd T. Elliott:
Genome-Wide Association with Uncertainty in the Genetic Similarity Matrix. J. Comput. Biol. 30(2): 189-203 (2023)- [j15]Nicola Mulberry, Alexander R. Rutherford, Caroline Colijn:
Pneumococcal population dynamics: Investigating vaccine-induced changes through multiscale modelling. PLoS Comput. Biol. 19(12) (2023) - 2021
- [j14]Shijia Wang, Shufei Ge, Caroline Colijn, Priscila Biller, Liangliang Wang, Lloyd T. Elliott:
Estimating Genetic Similarity Matrices Using Phylogenies. J. Comput. Biol. 28(6): 587-600 (2021) - [j13]Paul F. Tupper, Caroline Colijn:
COVID-19 in schools: Mitigating classroom clusters in the context of variable transmission. PLoS Comput. Biol. 17(7) (2021) - 2020
- [j12]Cornelia Metzig, Caroline Colijn:
A Maximum Entropy Method for the Prediction of Size Distributions. Entropy 22(3): 312 (2020) - [j11]Sean C. Anderson, Andrew M. Edwards, Madi Yerlanov, Nicola Mulberry, Jessica E. Stockdale, Sarafa A. Iyaniwura, Rebeca C. Falcao, Michael C. Otterstatter, Michael A. Irvine, Naveed Z. Janjua, Daniel Coombs, Caroline Colijn:
Quantifying the impact of COVID-19 control measures using a Bayesian model of physical distancing. PLoS Comput. Biol. 16(12) (2020) - [j10]Cornelia Metzig, Matthew Gould, Roshan Noronha, Roshani Abbey, Mark Sandler, Caroline Colijn:
Classification of origin with feature selection and network construction for folk tunes. Pattern Recognit. Lett. 133: 356-364 (2020) - 2019
- [j9]Cornelia Metzig, Oliver Ratmann, Daniela Bezemer, Caroline Colijn:
Phylogenies from dynamic networks. PLoS Comput. Biol. 15(2) (2019) - 2017
- [j8]Don Klinkenberg, Jantien A. Backer, Xavier Didelot, Caroline Colijn, Jacco Wallinga:
Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks. PLoS Comput. Biol. 13(5) (2017) - [j7]Nick Fyson, Jerry King, Thomas Belcher, Andrew Preston, Caroline Colijn:
A curated genome-scale metabolic model of Bordetella pertussis metabolism. PLoS Comput. Biol. 13(7) (2017) - 2016
- [j6]Giacomo Plazzotta, Caroline Colijn:
Asymptotic frequency of shapes in supercritical branching trees. J. Appl. Probab. 53(4): 1143-1155 (2016) - [j5]Leonid Chindelevitch, Caroline Colijn, Prashini Moodley, Douglas Wilson, Ted Cohen:
ClassTR: Classifying Within-Host Heterogeneity Based on Tandem Repeats with Application to Mycobacterium tuberculosis Infections. PLoS Comput. Biol. 12(2) (2016) - 2013
- [j4]Katy Robinson, Nick Fyson, Ted Cohen, Christophe Fraser, Caroline Colijn:
How the Dynamics and Structure of Sexual Contact Networks Shape Pathogen Phylogenies. PLoS Comput. Biol. 9(6) (2013) - 2011
- [j3]Kuhn Ip, Caroline Colijn, Desmond S. Lun:
Analysis of complex metabolic behavior through pathway decomposition. BMC Syst. Biol. 5: 91 (2011) - 2009
- [j2]Caroline Colijn, Aaron Brandes, Jeremy Zucker, Desmond S. Lun, Brian Weiner, Maha R. Farhat, Tan-Yun Cheng, D. Branch Moody, Megan Murray, James E. Galagan:
Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production. PLoS Comput. Biol. 5(8) (2009) - 2007
- [j1]Caroline Colijn, Michael C. Mackey:
Bifurcation and Bistability in a Model of Hematopoietic Regulation. SIAM J. Appl. Dyn. Syst. 6(2): 378-394 (2007)
Informal and Other Publications
- 2024
- [i1]Cédric Chauve, Caroline Colijn, Louxin Zhang:
A Vector Representation for Phylogenetic Trees. CoRR abs/2405.07110 (2024)
Coauthor Index
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