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Journal Articles
- 2021
[j23]Pengyuan Li
, Xiangying Jiang, Gongbo Zhang, Juan Trelles Trabucco, Daniela Raciti, Cynthia L. Smith, Martin Ringwald, G. Elisabeta Marai, Cecilia N. Arighi, Hagit Shatkay:
Corrigendum to: Utilizing image and caption information for biomedical document classification. Bioinform. 37(19): 3389 (2021)- [j22]Pengyuan Li, Xiangying Jiang, Gongbo Zhang, Juan Trelles Trabucco, Daniela Raciti, Cynthia L. Smith, Martin Ringwald, G. Elisabeta Marai, Cecilia N. Arighi, Hagit Shatkay:
Utilizing image and caption information for biomedical document classification. Bioinform. 37(Supplement): 468-476 (2021) - [j21]Richard M. Baldarelli, Constance M. Smith, Jacqueline H. Finger, Terry F. Hayamizu, Ingeborg J. McCright, Jingxia Xu, David R. Shaw, Jonathan S. Beal, Olin Blodgett, Jeff Campbell, Lori E. Corbani, Pete J. Frost, Sharon C. Giannatto, Dave Miers, James A. Kadin, Joel E. Richardson, Martin Ringwald:
The mouse Gene Expression Database (GXD): 2021 update. Nucleic Acids Res. 49(Database-Issue): D924-D931 (2021) - 2020
- [j20]Xiangying Jiang, Pengyuan Li, James A. Kadin, Judith A. Blake, Martin Ringwald, Hagit Shatkay:
Integrating image caption information into biomedical document classification in support of biocuration. Database J. Biol. Databases Curation 2020 (2020) - [j19]Xiangying Jiang, Martin Ringwald, Judith A. Blake, Hagit Shatkay:
Effective biomedical document classification for identifying publications relevant to the mouse Gene Expression Database (GXD). Database J. Biol. Databases Curation 2020 (2020) - [j18]Constance M. Smith, James A. Kadin, Richard M. Baldarelli, Jonathan S. Beal, Olin Blodgett, Sharon C. Giannatto, Joel E. Richardson, Martin Ringwald:
GXD's RNA-Seq and Microarray Experiment Search: using curated metadata to reliably find mouse expression studies of interest. Database J. Biol. Databases Curation 2020: baaa002 (2020) - 2019
- [j17]Xiangying Jiang, Martin Ringwald, Judith A. Blake, Cecilia N. Arighi, Gongbo Zhang, Hagit Shatkay:
An effective biomedical document classification scheme in support of biocuration: addressing class imbalance. Database J. Biol. Databases Curation 2019: baz045 (2019) - [j16]Constance M. Smith, Terry F. Hayamizu, Jacqueline H. Finger, Susan M. Bello, Ingeborg J. McCright, Jingxia Xu, Richard M. Baldarelli, Jon S. Beal, Jeff Campbell, Lori E. Corbani, Pete J. Frost, Jill R. Lewis, Sharon C. Giannatto, Dave Miers, David R. Shaw, James A. Kadin, Joel E. Richardson, Cynthia L. Smith, Martin Ringwald:
The mouse Gene Expression Database (GXD): 2019 update. Nucleic Acids Res. 47(Database-Issue): D774-D779 (2019) - 2017
- [j15]Xiangying Jiang, Martin Ringwald, Judith A. Blake, Hagit Shatkay:
Effective biomedical document classification for identifying publications relevant to the mouse Gene Expression Database (GXD). Database J. Biol. Databases Curation 2017: bax017 (2017) - [j14]Jacqueline H. Finger, Constance M. Smith, Terry F. Hayamizu, Ingeborg J. McCright, Jingxia Xu, Meiyee Law, David R. Shaw, Richard M. Baldarelli, Jon S. Beal, Olin Blodgett, Jeff Campbell, Lori E. Corbani, Jill R. Lewis, Kim L. Forthofer, Pete J. Frost, Sharon C. Giannatto, Lucie N. Hutchins, Dave Miers, Howie Motenko, Kevin R. Stone, Janan T. Eppig, James A. Kadin, Joel E. Richardson, Martin Ringwald:
The mouse Gene Expression Database (GXD): 2017 update. Nucleic Acids Res. 45(Database-Issue): D730-D736 (2017) - 2014
- [j13]Constance M. Smith, Jacqueline H. Finger, Terry F. Hayamizu, Ingeborg J. McCright, Jingxia Xu, Joanne Berghout, Jeff Campbell, Lori E. Corbani, Kim L. Forthofer, Pete J. Frost, Dave Miers, David R. Shaw, Kevin R. Stone, Janan T. Eppig, James A. Kadin, Joel E. Richardson, Martin Ringwald:
The mouse Gene Expression Database (GXD): 2014 update. Nucleic Acids Res. 42(Database-Issue): 818-824 (2014) - 2013
- [j12]Terry F. Hayamizu, Michael N. Wicks, Duncan Davidson, Albert Burger, Martin Ringwald, Richard A. Baldock:
EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update. J. Biomed. Semant. 4: 15 (2013) - 2012
- [j11]Terry F. Hayamizu, Sherri de Coronado, Gilberto Fragoso, Nicholas Sioutos, James A. Kadin, Martin Ringwald:
The mouse-human anatomy ontology mapping project. Database J. Biol. Databases Curation 2012 (2012) - 2011
- [j10]Jacqueline H. Finger, Constance M. Smith, Terry F. Hayamizu, Ingeborg J. McCright, Janan T. Eppig, James A. Kadin, Joel E. Richardson, Martin Ringwald:
The mouse Gene Expression Database (GXD): 2011 update. Nucleic Acids Res. 39(Database-Issue): 835-841 (2011) - [j9]Martin Ringwald, Vivek Iyer, Jeremy C. Mason, Kevin R. Stone, Hamsa D. Tadepally, James A. Kadin, Carol J. Bult, Janan T. Eppig, Darren J. Oakley, Sebastien Briois, Elia Stupka, Vincenza Maselli, Damian Smedley, Songyan Liu, Jens Hansen, Richard A. Baldock, Geoffrey G. Hicks, William C. Skarnes:
The IKMC web portal: a central point of entry to data and resources from the International Knockout Mouse Consortium. Nucleic Acids Res. 39(Database-Issue): 849-855 (2011) - 2010
- [j8]Damian Smedley, Paul N. Schofield, Chao-Kung Chen, Vassilis Aidinis, Crysanthi Ainali, Jonathan B. L. Bard, Rudi Balling, Ewan Birney, Andrew Blake, Erik Bongcam-Rudloff, Anthony J. Brookes, Gianni Cesareni, Christina Chandras, Janan T. Eppig, Paul Flicek, Georgios V. Gkoutos, Simon Greenaway, Michael Gruenberger, Jean-Karim Hériché, Andrew Lyall, Ann-Marie Mallon, Dawn Muddyman, Florian Reisinger, Martin Ringwald, Nadia A. Rosenthal, Klaus Schughart, Morris A. Swertz, Gudmundur A. Thorisson, Michael Zouberakis, John M. Hancock:
Finding and sharing: new approaches to registries of databases and services for the biomedical sciences. Database J. Biol. Databases Curation 2010 (2010) - 2009
- [j7]James J. Cimino, Terry F. Hayamizu, Olivier Bodenreider, Brian Davis, Grace A. Stafford, Martin Ringwald:
The caBIG terminology review process. J. Biomed. Informatics 42(3): 571-580 (2009) - 2007
- [j6]Constance M. Smith, Jacqueline H. Finger, Terry F. Hayamizu, Ingeborg J. McCright, Janan T. Eppig, James A. Kadin, Joel E. Richardson, Martin Ringwald:
The mouse Gene Expression Database (GXD): 2007 update. Nucleic Acids Res. 35(Database-Issue): 618-623 (2007) - 2004
- [j5]David P. Hill, Dale A. Begley, Jacqueline H. Finger, Terry F. Hayamizu, Ingeborg J. McCright, Constance M. Smith, Jon S. Beal, Lori E. Corbani, Judith A. Blake, Janan T. Eppig, James A. Kadin, Joel E. Richardson, Martin Ringwald:
The mouse Gene Expression Database (GXD): updates and enhancements. Nucleic Acids Res. 32(Database-Issue): 568-571 (2004) - 2002
- [j4]Catherine A. Ball, Gavin Sherlock, Helen E. Parkinson, Philippe Rocca-Serra, Catherine Brooksbank, Helen C. Causton, Duccio Cavalieri, Terry Gaasterland, Pascal Hingamp, Frank C. P. Holstege, Martin Ringwald, Paul T. Spellman, Christian J. Stoeckert Jr., Jason E. Stewart, Ronald C. Taylor, Alvis Brazma, John Quackenbush:
An open letter to the scientific journals. Bioinform. 18(11): 1409 (2002) - 2001
- [j3]Martin Ringwald, Janan T. Eppig, Dale A. Begley, John P. Corradi, Ingeborg J. McCright, Terry F. Hayamizu, David P. Hill, James A. Kadin, Joel E. Richardson:
The Mouse Gene Expression Database (GXD). Nucleic Acids Res. 29(1): 98-101 (2001) - 2000
- [j2]Martin Ringwald, Janan T. Eppig, James A. Kadin, Joel E. Richardson:
GXD: a Gene Expression Database for the laboratory mouse: current status and recent enhancements. Nucleic Acids Res. 28(1): 115-119 (2000) - 1999
- [j1]Martin Ringwald, Mary E. Mangan, Janan T. Eppig, James A. Kadin, Joel E. Richardson:
GXD: a gene expression database for the laboratory mouse. The Gene Expression Database Group. Nucleic Acids Res. 27(1): 106-112 (1999)
Conference and Workshop Papers
- 2023
- [c9]Juan Trelles Trabucco, Carla Floricel, Cecilia N. Arighi, Hagit Shatkay, Daniela Raciti, Martin Ringwald, G. Elisabeta Marai:
MouseScholar: Evaluating an Image+Text Search System for Biocuration. BIBM 2023: 1473-1480 - 2018
- [c8]Susan M. Bello, Terry F. Hayamizu, Cynthia L. Smith, Martin Ringwald:
Using Equivalence Axioms from the Mammalian Phenotype Ontology to Facilitate Phenotype and Expression Comparisons. ICBO 2018 - 2012
- [c7]Li Ni, Carol J. Bult, James A. Kadin, Joel E. Richardson, Martin Ringwald, Janan T. Eppig, Judith A. Blake:
Using Biomedical Ontologies for Data Representation and Management in the Mouse Genome Informatics (MGI) System. ICBO 2012 - 2011
- [c6]Terry F. Hayamizu, Martin Ringwald:
Mouse Anatomy Ontologies and GXD. ICBO 2011 - 2008
- [c5]Anna V. Anagnostopoulos, Judith A. Blake, Carol J. Bult, Martin Ringwald, Joel E. Richardson, James A. Kadin, Janan T. Eppig:
Using bio-ontologies as data annotation, integration & analytical tools at the Mouse Genome Informatics resource. BIBE 2008: 1-7 - 2005
- [c4]Olivier Bodenreider, Terry F. Hayamizu, Martin Ringwald, Sherri de Coronado, Songmao Zhang:
Of Mice and Men: Aligning Mouse and Human Anatomies. AMIA 2005 - [c3]Donnie Qi, Judith A. Blake, James A. Kadin, Joel E. Richardson, Martin Ringwald, Janan T. Eppig, Carol J. Bult:
Data Integration in the Mouse Genome Informatics (MGI) Database. CSB Workshops 2005: 37-38 - 2004
- [c2]Joel E. Richardson, James A. Kadin, Judith A. Blake, Carol J. Bult, Janan T. Eppig, Martin Ringwald:
From Sipping on a Straw to Drinking from a Fire Hose: Data Integration in a Public Genome Database. ICDE 2004: 795-798 - 2000
- [c1]Carol J. Bult, Joel E. Richardson, Judith A. Blake, James A. Kadin, Martin Ringwald, Janan T. Eppig:
Mouse Genome Informatics in a New Age of Biological Inquiry. BIBE 2000: 29-32
Coauthor Index
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