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ORCIDAly Azeem Khan
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- affiliation: University of Chicago, IL, USA
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Journal Articles
- 2022
[j4]Talal Ahmed
, Mark A. Carty, Stephane Wenric, Jonathan R. Dry, Ameen A. Salahudeen, Aly A. Khan, Eric Lefkofsky, Martin C. Stumpe, Raphael Pelossof:
Privacy preserving validation for multiomic prediction models. Briefings Bioinform. 23(3) (2022)- 2021
- [j3]Derek Reiman, Godhev Kumar Manakkat Vijay, Heping Xu, Andrew Sonin, Dianyu Chen, Nathan Salomonis, Harinder Singh, Aly A. Khan:
Pseudocell Tracer - A method for inferring dynamic trajectories using scRNAseq and its application to B cells undergoing immunoglobulin class switch recombination. PLoS Comput. Biol. 17(5) (2021) - 2018
- [j2]Somaye Hashemifar, Behnam Neyshabur, Aly A. Khan, Jinbo Xu:
Predicting protein-protein interactions through sequence-based deep learning. Bioinform. 34(17): i802-i810 (2018) - 2017
- [j1]Stefan Canzar, Karlynn E. Neu, Qingming Tang, Patrick C. Wilson, Aly A. Khan:
BASIC: BCR assembly from single cells. Bioinform. 33(3): 425-427 (2017)
Conference and Workshop Papers
- 2024
- [c6]Leah L. Weber, Derek Reiman, Mrinmoy Saha Roddur, Yuanyuan Qi, Mohammed El-Kebir, Aly A. Khan:
TRIBAL: Tree Inference of B Cell Clonal Lineages. RECOMB 2024: 364-367 - 2023
- [c5]Renyu Zhang, Aly A. Khan, Robert L. Grossman, Yuxin Chen:
Scalable Batch-Mode Deep Bayesian Active Learning via Equivalence Class Annealing. ICLR 2023 - 2020
- [c4]Renyu Zhang, Aly A. Khan, Robert L. Grossman:
Evaluation of Hyperbolic Attention in Histopathology Images. BIBE 2020: 773-776 - [c3]Renyu Zhang, Christopher Weber, Robert Grossman, Aly A. Khan:
Evaluating and interpreting caption prediction for histopathology images. MLHC 2020: 418-435 - 2019
- [c2]Derek Reiman, Lingdao Sha, Irvin Ho, Timothy Tan, Denise Lau, Aly A. Khan:
Integrating RNA expression and visual features for immune infiltrate prediction. PSB 2019: 284-295 - 2004
- [c1]Shobha Potluri, Aly Azeem Khan, A. Kuzminykh, Janusz M. Bujnicki, Alan M. Friedman, Chris Bailey-Kellogg:
Geometric Analysis of Cross-Linkability for Protein Fold Discrimination. Pacific Symposium on Biocomputing 2004: 447-458
Informal and Other Publications
- 2023
- [i2]Renyu Zhang, Aly A. Khan, Yuxin Chen, Robert L. Grossman:
Enhancing Instance-Level Image Classification with Set-Level Labels. CoRR abs/2311.05659 (2023) - 2021
- [i1]Renyu Zhang, Aly A. Khan, Robert L. Grossman, Yuxin Chen:
BALanCe: Deep Bayesian Active Learning via Equivalence Class Annealing. CoRR abs/2112.13737 (2021)
Coauthor Index
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