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Frederick P. Roth
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2020 – today
- 2021
- [j22]Da Kuang
, Rebecca Truty, Jochen Weile, Britt Johnson
, Keith Nykamp, Carlos Araya, Robert L. Nussbaum, Frederick P. Roth
:
Prioritizing genes for systematic variant effect mapping. Bioinform. 36(22-23): 5448-5455 (2021) - [j21]Da Kuang
, Jochen Weile, Nishka Kishore, Maria Nguyen, Alan F. Rubin
, Stanley Fields, Douglas M. Fowler, Frederick P. Roth
:
MaveRegistry: a collaboration platform for multiplexed assays of variant effect. Bioinform. 37(19): 3382-3383 (2021) - 2020
- [j20]Da Kuang
, Jochen Weile, Roujia Li, Tom W. Ouellette, Jarry A. Barber, Frederick P. Roth:
MaveQuest: a web resource for planning experimental tests of human variant effects. Bioinform. 36(12): 3938-3940 (2020) - [j19]Katja Luck, Dae-Kyum Kim
, Luke Lambourne
, Kerstin Spirohn
, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie
, Benoît Charloteaux, Dong-Sic Choi
, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács
, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons
, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav
, Mariana Babor, Dawit Balcha, Omer Basha
, Christian Bowman-Colin, Suet-Feung Chin
, Soon-gang Choi
, Claudia Colabella
, Georges Coppin, Cassandra D'Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola
, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad
, Elodie Hatchi, Mohamed Helmy
, Yves Jacob
, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson
, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland
, Adriana San-Miguel
, Yun Shen, Dayag Sheykhkarimli
, Gloria M. Sheynkman, Eyal Simonovsky
, Murat Tasan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere
, Yang Wang, Robert J. Weatheritt
, Jochen Weile, Yu Xia
, Xinping Yang
, Esti Yeger Lotem
, Quan Zhong
, Patrick Aloy, Gary D. Bader
, Javier De Las Rivas
, Suzanne Gaudet, Tong Hao
, Janusz Rak
, Jan Tavernier, David E. Hill
, Marc Vidal, Frederick P. Roth
, Michael A. Calderwood
:
A reference map of the human binary protein interactome. Nat. 580(7803): 402-408 (2020)
2010 – 2019
- 2019
- [j18]Yingzhou Wu
, Jochen Weile, Atina G. Coté, Song Sun, Jennifer J. Knapp, Marta Verby, Frederick P. Roth:
A web application and service for imputing and visualizing missense variant effect maps. Bioinform. 35(17): 3191-3193 (2019) - 2017
- [j17]Matthew J. Betts
, Oliver Wichmann, Mathias Utz, Timon Andre, Evangelia Petsalaki
, Pablo Minguez
, Luca Parca
, Frederick P. Roth, Anne-Claude Gavin
, Peer Bork, Robert B. Russell
:
Systematic identification of phosphorylation-mediated protein interaction switches. PLoS Comput. Biol. 13(3) (2017) - 2015
- [j16]Evangelia Petsalaki
, Andreas O. Helbig, Anjali Gopal, Adrian Pasculescu, Frederick P. Roth
, Tony Pawson:
SELPHI: correlation-based identification of kinase-associated networks from global phospho-proteomics data sets. Nucleic Acids Res. 43(Webserver-Issue): W276-W282 (2015) - [j15]Fan Yang, Evangelia Petsalaki
, Thomas Rolland
, David E. Hill, Marc Vidal, Frederick P. Roth
:
Protein Domain-Level Landscape of Cancer-Type-Specific Somatic Mutations. PLoS Comput. Biol. 11(3) (2015) - 2014
- [j14]Kaan Yilancioglu, Zohar B. Weinstein
, Cem Meydan
, Azat Akhmetov, Isil Toprak, Arda Durmaz, Ivan Iossifov, Hilal Kazan, Frederick P. Roth
, Murat Cokol:
Target-Independent Prediction of Drug Synergies Using Only Drug Lipophilicity. J. Chem. Inf. Model. 54(8): 2286-2293 (2014) - 2013
- [j13]Theodore R. Pak, Frederick P. Roth
:
ChromoZoom: a flexible, fluid, web-based genome browser. Bioinform. 29(3): 384-386 (2013) - 2012
- [j12]Natali Gulbahce, Han Yan, Amélie Dricot, Megha Padi, Danielle Byrdsong, Rachel Franchi, Deok-Sun Lee
, Orit Rozenblatt-Rosen, Jessica Cara Mar
, Michael A. Calderwood, Amy Baldwin
, Bo Zhao, Balaji Santhanam, Pascal Braun
, Nicolas Simonis, Kyung-Won Huh, Karin Hellner, Miranda Grace, Alyce Chen
, Renee Rubio, Jarrod A. Marto, Nicholas A. Christakis, Elliott Kieff, Frederick P. Roth
, Jennifer Roecklein-Canfield, James A. DeCaprio, Michael E. Cusick, John Quackenbush
, David E. Hill, Karl Münger
, Marc Vidal, Albert-László Barabási:
Viral Perturbations of Host Networks Reflect Disease Etiology. PLoS Comput. Biol. 8(6) (2012) - [c3]Oliver Stegle, Frederick P. Roth, Quaid Morris, Jennifer Listgarten:
Session introduction. Pacific Symposium on Biocomputing 2012: 323-326 - 2010
- [j11]John E. Beaver, Murat Tasan, Francis D. Gibbons, Weidong Tian, Timothy R. Hughes, Frederick P. Roth
:
FuncBase : a resource for quantitative gene function annotation. Bioinform. 26(14): 1806-1807 (2010) - [j10]Rahul C. Deo, Luke Hunter, Gregory D. Lewis, Guillaume Pare
, Ramachandran S. Vasan, Daniel Chasman, Thomas J. Wang
, Robert E. Gerszten, Frederick P. Roth
:
Interpreting Metabolomic Profiles using Unbiased Pathway Models. PLoS Comput. Biol. 6(2) (2010)
2000 – 2009
- 2009
- [j9]Gabriel F. Berriz, John E. Beaver, Can Cenik
, Murat Tasan, Frederick P. Roth
:
Next generation software for functional trend analysis. Bioinform. 25(22): 3043-3044 (2009) - [r1]Lan V. Zhang, Frederick P. Roth
:
Biomolecular Network Structure and Function. Encyclopedia of Complexity and Systems Science 2009: 570-589 - 2008
- [j8]Gabriel F. Berriz, Frederick P. Roth
:
The Synergizer service for translating gene, protein and other biological identifiers. Bioinform. 24(19): 2272-2273 (2008) - [j7]Justin Klekota, Frederick P. Roth
:
Chemical substructures that enrich for biological activity. Bioinform. 24(21): 2518-2525 (2008) - 2006
- [j6]Justin Klekota, Frederick P. Roth
, Stuart L. Schreiber:
Query Chem: a Google-powered web search combining text and chemical structures. Bioinform. 22(13): 1670-1673 (2006) - [j5]Justin Klekota, Erik Brauner, Frederick P. Roth
, Stuart L. Schreiber:
Using High-Throughput Screening Data To Discriminate Compounds with Single-Target Effects from Those with Side Effects. J. Chem. Inf. Model. 46(4): 1549-1562 (2006) - [c2]Hailiang Huang, Lan V. Zhang, Frederick P. Roth
, Joel S. Bader:
Probabilistic Paths for Protein Complex Inference. Systems Biology and Computational Proteomics 2006: 14-28 - 2004
- [j4]Yonatan H. Grad, Frederick P. Roth
, Marc S. Halfon, George M. Church
:
Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura. Bioinform. 20(16): 2738-2750 (2004) - [j3]Lan V. Zhang, Sharyl L. Wong, Oliver D. King, Frederick P. Roth
:
Predicting co-complexed protein pairs using genomic and proteomic data integration. BMC Bioinform. 5: 38 (2004) - 2003
- [j2]Gabriel F. Berriz, James V. White, Oliver D. King, Frederick P. Roth
:
GoFish finds genes with combinations of Gene Ontology attributes. Bioinform. 19(6): 788-789 (2003) - [j1]Gabriel F. Berriz, Oliver D. King, Barbara Bryant, Chris Sander, Frederick P. Roth
:
Characterizing gene sets with FuncAssociate. Bioinform. 19(18): 2502-2504 (2003) - [c1]Oliver D. King, Jeffrey C. Lee, Aimée M. Dudley, Daniel M. Janse, George M. Church, Frederick P. Roth:
Predicting phenotype from patterns of annotation. ISMB (Supplement of Bioinformatics) 2003: 183-189
Coauthor Index
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