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Journal Articles
- 2024
[j15]Xin Yang, Elyssa Sliheet, Reece Iriye, Daniel R. Reynolds, Weihua Geng
:
Optimized parallelization of boundary integral Poisson-Boltzmann solvers. Comput. Phys. Commun. 299: 109125 (2024)- [j14]Sheik Ahmed Ullah, Xin Yang, Benjamin Jones, Shan Zhao, Weihua Geng, Guo-Wei Wei:
Bridging Eulerian and Lagrangian Poisson-Boltzmann solvers by ESES. J. Comput. Chem. 45(6): 306-320 (2024) - 2023
- [j13]Jiahui Chen, Johannes Tausch, Weihua Geng:
A Cartesian FMM-accelerated Galerkin boundary integral Poisson-Boltzmann solver. J. Comput. Phys. 478: 111981 (2023) - 2022
- [j12]Leighton Wilson, Jingzhen Hu, Jiahui Chen, Robert Krasny, Weihua Geng:
Computing electrostatic binding energy with the TABI Poisson-Boltzmann solver. Commun. Inf. Syst. 22(2): 247-273 (2022) - [j11]Sylvia Amihere, Weihua Geng, Shan Zhao:
Benchmarking electrostatic free energy of the nonlinear Poisson-Boltzmann model for the Kirkwood sphere. Commun. Inf. Syst. 22(3): 305-315 (2022) - 2021
- [j10]Jiahui Chen, Weihua Geng, Daniel R. Reynolds:
Cyclically parallelized treecode for fast computations of electrostatic interactions on molecular surfaces. Comput. Phys. Commun. 260: 107742 (2021) - [j9]Arum Lee, Weihua Geng, Shan Zhao:
Regularization methods for the Poisson-Boltzmann equation: Comparison and accuracy recovery. J. Comput. Phys. 426: 109958 (2021) - 2018
- [j8]Weihua Geng, Xin Yang:
Role of combinatorial complexity in genetic networks. Commun. Inf. Syst. 18(4): 209-228 (2018) - [j7]Jiahui Chen, Weihua Geng:
On preconditioning the treecode-accelerated boundary integral (TABI) Poisson-Boltzmann solver. J. Comput. Phys. 373: 750-762 (2018) - 2017
- [j6]Weihua Geng, Shan Zhao:
A two-component Matched Interface and Boundary (MIB) regularization for charge singularity in implicit solvation. J. Comput. Phys. 351: 25-39 (2017) - 2013
- [j5]Weihua Geng, Ferosh Jacob:
A GPU-accelerated direct-sum boundary integral Poisson-Boltzmann solver. Comput. Phys. Commun. 184(6): 1490-1496 (2013) - [j4]Weihua Geng:
Parallel higher-order boundary integral electrostatics computation on molecular surfaces with curved triangulation. J. Comput. Phys. 241: 253-265 (2013) - [j3]Weihua Geng, Robert Krasny:
A treecode-accelerated boundary integral Poisson-Boltzmann solver for electrostatics of solvated biomolecules. J. Comput. Phys. 247: 62-78 (2013) - 2011
- [j2]Duan Chen, Zhan Chen, Changjun Chen, Weihua Geng, Guo-Wei Wei:
MIBPB: A software package for electrostatic analysis. J. Comput. Chem. 32(4): 756-770 (2011) - [j1]Weihua Geng, Guo-Wei Wei:
Multiscale molecular dynamics using the matched interface and boundary method. J. Comput. Phys. 230(2): 435-457 (2011)
Conference and Workshop Papers
- 2015
- [c1]Jiahui Chen, Weihua Geng:
Parallel Computing of the Adaptive N-Body Treecode Algorithm for Solving Boundary Integral Poisson-Boltzmann Equation. HPCA (China) 2015: 82-89
Informal and Other Publications
- 2024
- [i5]Elyssa Sliheet, Md Abu Talha, Weihua Geng:
A DNN Biophysics Model with Topological and Electrostatic Features. CoRR abs/2409.03658 (2024) - 2023
- [i4]Zhen Chao, Weihua Geng, Robert Krasny:
Integral equation method for the 1D steady-state Poisson-Nernst-Planck equations. CoRR abs/2304.04371 (2023) - 2021
- [i3]Jiahui Chen, Weihua Geng, Guo-Wei Wei:
MLIMC: Machine learning-based implicit-solvent Monte Carlo. CoRR abs/2109.12100 (2021) - 2013
- [i2]Weihua Geng, Ferosh Jacob:
A GPU-accelerated Direct-sum Boundary Integral Poisson-Boltzmann Solver. CoRR abs/1301.5885 (2013) - [i1]Weihua Geng:
Parallel Higher-order Boundary Integral Electrostatics Computation on Molecular Surfaces with Curved Triangulation. CoRR abs/1301.5914 (2013)
Coauthor Index
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