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ORCIDBruce Fischl
Bruce R. Fischl
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- affiliation: Massachusetts General Hospital, Charlestown, MA, USA
- affiliation: Harvard Medical School, Department of Radiology, USA
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Journal Articles
- 2023
[j134]Benjamin Billot
, Douglas N. Greve, Oula Puonti, Axel Thielscher, Koen Van Leemput, Bruce Fischl, Adrian V. Dalca, Juan Eugenio Iglesias:
SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining. Medical Image Anal. 86: 102789 (2023)- 2022
- [j133]Adrià Casamitjana, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias:
Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas. Medical Image Anal. 75: 102265 (2022) - [j132]Divya Varadarajan, Caroline Magnain, Morgan Fogarty, David A. Boas, Bruce Fischl, Hui Wang:
A novel algorithm for multiplicative speckle noise reduction in ex vivo human brain OCT images. NeuroImage 257: 119304 (2022) - [j131]Andrew Hoopes, Jocelyn S. Mora, Adrian V. Dalca, Bruce Fischl, Malte Hoffmann:
SynthStrip: skull-stripping for any brain image. NeuroImage 260: 119474 (2022) - [j130]Jiarui Yang, Shuaibin Chang, Ichun Anderson Chen, Sreekanth Kura, Grace A. Rosen, Nicole A. Saltiel, Bertrand R. Huber, Divya Varadarajan, Yaël Balbastre, Caroline Magnain, Shih-Chi Chen, Bruce Fischl, Ann C. McKee, David A. Boas, Hui Wang:
Volumetric Characterization of Microvasculature in Ex Vivo Human Brain Samples By Serial Sectioning Optical Coherence Tomography. IEEE Trans. Biomed. Eng. 69(12): 3645-3656 (2022) - [j129]Malte Hoffmann, Benjamin Billot, Douglas N. Greve, Juan Eugenio Iglesias, Bruce Fischl, Adrian V. Dalca:
SynthMorph: Learning Contrast-Invariant Registration Without Acquired Images. IEEE Trans. Medical Imaging 41(3): 543-558 (2022) - 2021
- [j128]Aina Frau-Pascual, Jean Augustinack, Divya Varadarajan, Anastasia Yendiki, David H. Salat, Bruce Fischl, Iman Aganj:
Conductance-Based Structural Brain Connectivity in Aging and Dementia. Brain Connect. 11(7): 566-583 (2021) - [j127]Donatas Sederevicius, Dídac Vidal-Piñeiro, Øystein Sørensen, Koenraad Van Leemput, Juan Eugenio Iglesias, Adrian V. Dalca, Douglas N. Greve, Bruce Fischl, Atle Bjørnerud, Kristine B. Walhovd, Anders M. Fjell:
Reliability and sensitivity of two whole-brain segmentation approaches included in FreeSurfer - ASEG and SAMSEG. NeuroImage 237: 118113 (2021) - [j126]Juan Eugenio Iglesias, Benjamin Billot, Yaël Balbastre, Azadeh Tabari, John Conklin, R. Gilberto González, Daniel C. Alexander, Polina Golland, Brian L. Edlow, Bruce Fischl:
Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast. NeuroImage 237: 118206 (2021) - [j125]Douglas N. Greve, Benjamin Billot, Devani Cordero, Andrew Hoopes, Malte Hoffmann, Adrian V. Dalca, Bruce Fischl, Juan Eugenio Iglesias, Jean C. Augustinack:
A deep learning toolbox for automatic segmentation of subcortical limbic structures from MRI images. NeuroImage 244: 118610 (2021) - [j124]Robert Jones, Chiara Maffei, Jean Augustinack, Bruce Fischl, Hui Wang, Berkin Bilgic, Anastasia Yendiki:
High-fidelity approximation of grid- and shell-based sampling schemes from undersampled DSI using compressed sensing: Post mortem validation. NeuroImage 244: 118621 (2021) - [j123]Chao J. Liu, William Ammon, Viviana Siless, Morgan Fogarty, Ruopeng Wang, Alessia Atzeni, Iman Aganj, Juan Eugenio Iglesias, Lilla Zöllei, Bruce Fischl, Jeremy D. Schmahmann, Hui Wang:
Quantification of volumetric morphometry and optical property in the cortex of human cerebellum at micrometer resolution. NeuroImage 244: 118627 (2021) - [j122]Jian Li, William H. Curley, Bastien Guérin, Darin D. Dougherty, Adrian V. Dalca, Bruce Fischl, Andreas Horn, Brian L. Edlow:
Mapping the subcortical connectivity of the human default mode network. NeuroImage 245: 118758 (2021) - [j121]Iman Aganj, Bruce Fischl:
Multi-Atlas Image Soft Segmentation via Computation of the Expected Label Value. IEEE Trans. Medical Imaging 40(6): 1702-1710 (2021) - 2020
- [j120]Emma M. Brown, Meghan E. Pierce, Dustin C. Clark, Bruce R. Fischl, Juan Eugenio Iglesias, William P. Milberg, Regina E. McGlinchey, David H. Salat:
Test-retest reliability of FreeSurfer automated hippocampal subfield segmentation within and across scanners. NeuroImage 210: 116563 (2020) - [j119]Robert Jones, Giorgia Grisot, Jean Augustinack, Caroline Magnain, David A. Boas, Bruce Fischl, Hui Wang, Anastasia Yendiki:
Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain. NeuroImage 214: 116704 (2020) - [j118]Lilla Zöllei, Juan Eugenio Iglesias, Yangming Ou, Patricia Ellen Grant, Bruce Fischl:
Infant FreeSurfer: An automated segmentation and surface extraction pipeline for T1-weighted neuroimaging data of infants 0-2 years. NeuroImage 218: 116946 (2020) - [j117]Leonie Henschel, Sailesh Conjeti, Santiago Estrada, Kersten Diers, Bruce Fischl, Martin Reuter:
FastSurfer - A fast and accurate deep learning based neuroimaging pipeline. NeuroImage 219: 117012 (2020) - [j116]Jieyu Cheng, Adrian V. Dalca, Bruce Fischl, Lilla Zöllei, Alzheimer's Disease Neuroimaging Initiative:
Cortical surface registration using unsupervised learning. NeuroImage 221: 117161 (2020) - 2019
- [j115]Susan Y. Bookheimer, David H. Salat, Melissa Terpstra, Beau M. Ances, Deanna M. Barch, Randy L. Buckner, Gregory C. Burgess, Sandra W. Curtiss, Mirella Diaz-Santos, Jennifer Stine Elam, Bruce Fischl, Douglas N. Greve, Hannah A. Hagy, Michael P. Harms, Olivia M. Hatch, Trey Hedden, Cynthia Hodge, Kevin C. Japardi, Essa Yacoub:
The Lifespan Human Connectome Project in Aging: An overview. NeuroImage 185: 335-348 (2019) - [j114]Aina Frau-Pascual, Morgan Fogarty, Bruce Fischl, Anastasia Yendiki, Iman Aganj:
Quantification of structural brain connectivity via a conductance model. NeuroImage 189: 485-496 (2019) - [j113]Anna I. Blazejewska, Bruce Fischl, Lawrence L. Wald, Jonathan R. Polimeni:
Intracortical smoothing of small-voxel fMRI data can provide increased detection power without spatial resolution losses compared to conventional large-voxel fMRI data. NeuroImage 189: 601-614 (2019) - [j112]Michael A. Cohen, Daniel D. Dilks, Kami Koldewyn, Sarah Weigelt, Jenelle Feather, Alexander J. E. Kell, Boris Keil, Bruce Fischl, Lilla Zöllei, Lawrence L. Wald, Rebecca Saxe, Nancy Kanwisher:
Representational similarity precedes category selectivity in the developing ventral visual pathway. NeuroImage 197: 565-574 (2019) - [j111]Amod Jog, Andrew Hoopes, Douglas N. Greve, Koen Van Leemput, Bruce Fischl:
PSACNN: Pulse sequence adaptive fast whole brain segmentation. NeuroImage 199: 553-569 (2019) - 2018
- [j110]Juan Eugenio Iglesias, Marc Modat, Loïc Peter, Allison Stevens, Roberto Annunziata, Tom Vercauteren, Ed S. Lein, Bruce Fischl, Sébastien Ourselin:
Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections. Medical Image Anal. 50: 127-144 (2018) - [j109]Natalia Zaretskaya, Bruce Fischl, Martin Reuter, Ville Renvall, Jonathan R. Polimeni:
Advantages of cortical surface reconstruction using submillimeter 7 T MEMPRAGE. NeuroImage 165: 11-26 (2018) - [j108]Hui Wang, Caroline Magnain, Ruopeng Wang, Jay Dubb, Ani Varjabedian, Lee S. Tirrell, Allison Stevens, Jean C. Augustinack, Ender Konukoglu, Iman Aganj, Matthew P. Frosch, Jeremy D. Schmahmann, Bruce Fischl, David A. Boas:
as-PSOCT: Volumetric microscopic imaging of human brain architecture and connectivity. NeuroImage 165: 56-68 (2018) - [j107]Viviana Siless, Ken Chang, Bruce Fischl, Anastasia Yendiki:
AnatomiCuts: Hierarchical clustering of tractography streamlines based on anatomical similarity. NeuroImage 166: 32-45 (2018) - [j106]Jonathan R. Polimeni, Ville Renvall, Natalia Zaretskaya, Bruce Fischl:
Analysis strategies for high-resolution UHF-fMRI data. NeuroImage 168: 296-320 (2018) - [j105]Marta Bianciardi, Christian Strong, Nicola Toschi, Brian L. Edlow, Bruce Fischl, Emery N. Brown, Bruce R. Rosen, Lawrence L. Wald:
A probabilistic template of human mesopontine tegmental nuclei from in vivo 7 T MRI. NeuroImage 170: 222-230 (2018) - [j104]Douglas N. Greve, Bruce Fischl:
False positive rates in surface-based anatomical analysis. NeuroImage 171: 6-14 (2018) - [j103]Bruce Fischl, Martin I. Sereno:
Microstructural parcellation of the human brain. NeuroImage 182: 219-231 (2018) - [j102]Juan Eugenio Iglesias, Ricardo Insausti, Garikoitz Lerma-Usabiaga, Martina Bocchetta, Koen Van Leemput, Douglas N. Greve, André J. W. van der Kouwe, Bruce Fischl, César Caballero-Gaudes, Pedro M. Paz-Alonso:
A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology. NeuroImage 183: 314-326 (2018) - 2017
- [j101]Iman Aganj, Juan Eugenio Iglesias, Martin Reuter, Mert Rory Sabuncu, Bruce Fischl:
Mid-space-independent deformable image registration. NeuroImage 152: 158-170 (2017) - [j100]Zeynep M. Saygin, Dorit Kliemann, Juan Eugenio Iglesias, André J. W. van der Kouwe, Ellen Boyd, Martin Reuter, Allison Stevens, Koenraad Van Leemput, Alexis McKee, Matthew P. Frosch, Bruce Fischl, Jean C. Augustinack:
High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segmentation to automatic atlas. NeuroImage 155: 370-382 (2017) - [j99]Tong Tong, Iman Aganj, Tian Ge, Jonathan R. Polimeni, Bruce Fischl:
Functional density and edge maps: Characterizing functional architecture in individuals and improving cross-subject registration. NeuroImage 158: 346-355 (2017) - [j98]Iman Aganj, Bruce Fischl:
Multimodal Image Registration Through Simultaneous Segmentation. IEEE Signal Process. Lett. 24(11): 1661-1665 (2017) - 2016
- [j97]M. Dylan Tisdall, Martin Reuter, Abid Y. Qureshi, Randy L. Buckner, Bruce Fischl, André J. W. van der Kouwe:
Prospective motion correction with volumetric navigators (vNavs) reduces the bias and variance in brain morphometry induced by subject motion. NeuroImage 127: 11-22 (2016) - [j96]Anastasia Yendiki, Martin Reuter, Paul Wilkens, H. Diana Rosas, Bruce Fischl:
Joint reconstruction of white-matter pathways from longitudinal diffusion MRI data with anatomical priors. NeuroImage 127: 277-286 (2016) - [j95]Ender Konukoglu, Jean-Philippe Coutu, David H. Salat, Bruce Fischl:
Multivariate statistical analysis of diffusion imaging parameters using partial least squares: Application to white matter variations in Alzheimer's disease. NeuroImage 134: 573-586 (2016) - [j94]Juan Eugenio Iglesias, Koen Van Leemput, Jean Augustinack, Ricardo Insausti, Bruce Fischl, Martin Reuter:
Bayesian longitudinal segmentation of hippocampal substructures in brain MRI using subject-specific atlases. NeuroImage 141: 542-555 (2016) - 2015
- [j93]Rebecca Shafee, Randy L. Buckner, Bruce Fischl:
Gray matter myelination of 1555 human brains using partial volume corrected MRI images. NeuroImage 105: 473-485 (2015) - [j92]Iman Aganj, Martin Reuter, Mert R. Sabuncu, Bruce Fischl:
Avoiding symmetry-breaking spatial non-uniformity in deformable image registration via a quasi-volume-preserving constraint. NeuroImage 106: 238-251 (2015) - [j91]Juan Eugenio Iglesias, Mert Rory Sabuncu, Iman Aganj, Priyanka Bhatt, Christen Casillas, David H. Salat, Adam L. Boxer, Bruce Fischl, Koen Van Leemput:
An algorithm for optimal fusion of atlases with different labeling protocols. NeuroImage 106: 451-463 (2015) - [j90]Martin Reuter, M. Dylan Tisdall, Abid Y. Qureshi, Randy L. Buckner, André J. W. van der Kouwe, Bruce Fischl:
Head motion during MRI acquisition reduces gray matter volume and thickness estimates. NeuroImage 107: 107-115 (2015) - [j89]Mert R. Sabuncu, Jorge L. Bernal-Rusiel, Martin Reuter, Douglas N. Greve, Bruce Fischl:
Corrigendum to "Event time analysis of longitudinal neuroimage data" [NeuroImage 97 (15 August 2014) 9-18]. NeuroImage 108: 74 (2015) - [j88]Jorge L. Bernal-Rusiel, Douglas N. Greve, Martin Reuter, Bruce Fischl, Mert R. Sabuncu:
Corrigendum to "Statistical analysis of longitudinal neuroimage data with Linear Mixed Effects models" [NeuroImage 66 (1 February 2013) 249-260]. NeuroImage 108: 110 (2015) - [j87]Jorge L. Bernal-Rusiel, Martin Reuter, Douglas N. Greve, Bruce Fischl, Mert R. Sabuncu:
Corrigendum to "Spatiotemporal linear mixed effects modeling for the mass-univariate analysis of longitudinal neuroimage data" [NeuroImage 81 (1 November 2013) 358-370]. NeuroImage 108: 123 (2015) - [j86]Christian Wachinger, Polina Golland, William S. Kremen, Bruce Fischl, Martin Reuter:
BrainPrint: A discriminative characterization of brain morphology. NeuroImage 109: 232-248 (2015) - [j85]Juan Eugenio Iglesias, Koen Van Leemput, Priyanka Bhatt, Christen Casillas, Shubir Dutt, Norbert Schuff, Diana Truran-Sacrey, Adam L. Boxer, Bruce Fischl:
Bayesian segmentation of brainstem structures in MRI. NeuroImage 113: 184-195 (2015) - [j84]Juan Eugenio Iglesias, Jean C. Augustinack, Khoa Nguyen, Christopher M. Player, Allison Player, Michelle Wright, Nicole Roy, Matthew P. Frosch, Ann C. McKee, Lawrence L. Wald, Bruce Fischl, Koen Van Leemput:
A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI. NeuroImage 115: 117-137 (2015) - [j83]Melanie Ganz, Douglas N. Greve, Bruce Fischl, Ender Konukoglu:
Relevant feature set estimation with a knock-out strategy and random forests. NeuroImage 122: 131-148 (2015) - [j82]David M. Cash, Chris Frost, Leonardo O. Iheme, Devrim Ünay, Melek Kandemir, Jurgen Fripp, Olivier Salvado, Pierrick Bourgeat, Martin Reuter, Bruce Fischl, Marco Lorenzi, Giovanni B. Frisoni, Xavier Pennec, Ronald K. Pierson, Jeffrey L. Gunter, Matthew L. Senjem, Clifford R. Jack Jr., Nicolas Guizard, Vladimir S. Fonov, D. Louis Collins, Marc Modat, M. Jorge Cardoso, Kelvin K. Leung, Hongzhi Wang, Sandhitsu R. Das, Paul A. Yushkevich, Ian B. Malone, Nick C. Fox, Jonathan M. Schott, Sébastien Ourselin:
Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge. NeuroImage 123: 149-164 (2015) - 2014
- [j81]Lisa T. Eyler, Eero Vuoksimaa, Matthew S. Panizzon, Christine Fennema-Notestine, Michael C. Neale, Chi-Hua Chen, Amy J. Jak, Carol E. Franz, Michael J. Lyons, Wesley K. Thompson, Kelly M. Spoon, Bruce Fischl, Anders M. Dale, William S. Kremen:
Conceptual and Data-based Investigation of Genetic Influences and Brain Asymmetry: A Twin Study of Multiple Structural Phenotypes. J. Cogn. Neurosci. 26(5): 1100-1117 (2014) - [j80]Caroline Magnain, Jean Augustinack, Martin Reuter, Christian Wachinger, Matthew P. Frosch, Timothy Ragan, Taner Akkin, Van J. Wedeen, David A. Boas, Bruce Fischl:
Blockface histology with optical coherence tomography: A comparison with Nissl staining. NeuroImage 84: 524-533 (2014) - [j79]Anastasia Yendiki, Kami Koldewyn, Sita Kakunoori, Nancy Kanwisher, Bruce Fischl:
Spurious group differences due to head motion in a diffusion MRI study. NeuroImage 88: 79-90 (2014) - [j78]Kyoko Fujimoto, Jonathan R. Polimeni, André J. W. van der Kouwe, Martin Reuter, Tobias Kober, Thomas Benner, Bruce Fischl, Lawrence L. Wald:
Quantitative comparison of cortical surface reconstructions from MP2RAGE and multi-echo MPRAGE data at 3 and 7 T. NeuroImage 90: 60-73 (2014) - [j77]Douglas N. Greve, Claus Svarer, Patrick M. Fisher, Ling Feng, Adam Espe Hansen, William F. C. Baaré, Bruce R. Rosen, Bruce Fischl, Gitte Moos Knudsen:
Cortical surface-based analysis reduces bias and variance in kinetic modeling of brain PET data. NeuroImage 92: 225-236 (2014) - [j76]Christian Wasserthal, André Brechmann, Jörg Stadler, Bruce Fischl, Karin Engel:
Localizing the human primary auditory cortex in vivo using structural MRI. NeuroImage 93: 237-251 (2014) - [j75]Jean C. Augustinack, Caroline Magnain, Martin Reuter, André J. W. van der Kouwe, David A. Boas, Bruce Fischl:
MRI parcellation of ex vivo medial temporal lobe. NeuroImage 93: 252-259 (2014) - [j74]Mert R. Sabuncu, Jorge L. Bernal-Rusiel, Martin Reuter, Douglas N. Greve, Bruce Fischl:
Event time analysis of longitudinal neuroimage data. NeuroImage 97: 9-18 (2014) - [j73]Hui Wang, Junfeng Zhu, Martin Reuter, Louis N. Vinke, Anastasia Yendiki, David A. Boas, Bruce Fischl, Taner Akkin:
Cross-validation of serial optical coherence scanning and diffusion tensor imaging: A study on neural fiber maps in human medulla oblongata. NeuroImage 100: 395-404 (2014) - 2013
- [j72]Douglas N. Greve, Lise Van der Haegen, Qing Cai, Steven M. Stufflebeam, Mert R. Sabuncu, Bruce Fischl, Marc Brysbaert:
A Surface-based Analysis of Language Lateralization and Cortical Asymmetry. J. Cogn. Neurosci. 25(9): 1477-1492 (2013) - [j71]Jean Augustinack, Kristen Huber, Allison Stevens, Michelle Roy, Matthew P. Frosch, André J. W. van der Kouwe, Lawrence L. Wald, Koen Van Leemput, Ann C. McKee, Bruce Fischl:
Predicting the location of human perirhinal cortex, Brodmann's area 35, from MRI. NeuroImage 64: 32-42 (2013) - [j70]Jorge L. Bernal-Rusiel, Douglas N. Greve, Martin Reuter, Bruce Fischl, Mert R. Sabuncu:
Statistical analysis of longitudinal neuroimage data with Linear Mixed Effects models. NeuroImage 66: 249-260 (2013) - [j69]James Kolasinski, Emi Takahashi, Allison Stevens, Thomas Benner, Bruce Fischl, Lilla Zöllei, Patricia Ellen Grant:
Radial and tangential neuronal migration pathways in the human fetal brain: Anatomically distinct patterns of diffusion MRI coherence. NeuroImage 79: 412-422 (2013) - [j68]Matthew F. Glasser, Stamatios N. Sotiropoulos, J. Anthony Wilson, Timothy S. Coalson, Bruce Fischl, Jesper L. R. Andersson, Junqian Xu, Saâd Jbabdi, Matthew A. Webster, Jonathan R. Polimeni, David C. Van Essen, Mark Jenkinson:
The minimal preprocessing pipelines for the Human Connectome Project. NeuroImage 80: 105-124 (2013) - [j67]Jorge L. Bernal-Rusiel, Martin Reuter, Douglas N. Greve, Bruce Fischl, Mert R. Sabuncu:
Spatiotemporal linear mixed effects modeling for the mass-univariate analysis of longitudinal neuroimage data. NeuroImage 81: 358-370 (2013) - [j66]Iman Aganj, B. T. Thomas Yeo, Mert R. Sabuncu, Bruce Fischl:
On Removing Interpolation and Resampling Artifacts in Rigid Image Registration. IEEE Trans. Image Process. 22(2): 816-827 (2013) - 2012
- [j65]Matthew S. Panizzon, Richard L. Hauger, Lindon J. Eaves, Chi-Hua Chen, Anders M. Dale, Lisa T. Eyler, Bruce Fischl, Christine Fennema-Notestine, Carol E. Franz, Michael D. Grant, Kristen C. Jacobson, Amy J. Jak, Michael J. Lyons, Sally P. Mendoza, Michael C. Neale, Elizabeth Prom-Wormley, Larry J. Seidman, Ming T. Tsuang, Hong Xian, William S. Kremen:
Genetic influences on hippocampal volume differ as a function of testosterone level in middle-aged men. NeuroImage 59(2): 1123-1131 (2012) - [j64]Matthew S. Panizzon, Christine Fennema-Notestine, Thomas S. Kubarych, Chi-Hua Chen, Lisa T. Eyler, Bruce Fischl, Carol E. Franz, Michael D. Grant, Samar Hamza, Amy J. Jak, Terry L. Jernigan, Michael J. Lyons, Michael C. Neale, Elizabeth Prom-Wormley, Larry J. Seidman, Ming T. Tsuang, Hao Wu, Hong Xian, Anders M. Dale, William S. Kremen:
Genetic and environmental influences of white and gray matter signal contrast: A new phenotype for imaging genetics? NeuroImage 60(3): 1686-1695 (2012) - [j63]Martin Reuter, Nicholas J. Schmansky, H. Diana Rosas, Bruce Fischl:
Within-subject template estimation for unbiased longitudinal image analysis. NeuroImage 61(4): 1402-1418 (2012) - [j62]Anderson M. Winkler, Mert R. Sabuncu, B. T. Thomas Yeo, Bruce Fischl, Douglas N. Greve, Peter V. Kochunov, Thomas E. Nichols, John Blangero, David C. Glahn:
Measuring and comparing brain cortical surface area and other areal quantities. NeuroImage 61(4): 1428-1443 (2012) - [j61]Bruce Fischl:
FreeSurfer. NeuroImage 62(2): 774-781 (2012) - [j60]Robert J. Cooper, Matteo Caffini, Jay Dubb, Qianqian Fang, Anna Custo, Daisuke Tsuzuki, Bruce Fischl, William M. Wells III, Ippeita Dan, David A. Boas:
Validating atlas-guided DOT: A comparison of diffuse optical tomography informed by atlas and subject-specific anatomies. NeuroImage 62(3): 1999-2006 (2012) - 2011
- [j59]Anastasia Yendiki, Patricia Panneck, Priti Srinivasan, Allison Stevens, Lilla Zöllei, Jean Augustinack, Ruopeng Wang, David H. Salat, Stefan Ehrlich, Tim E. J. Behrens, Saâd Jbabdi, Randy L. Gollub, Bruce Fischl:
Automated Probabilistic Reconstruction of White-Matter Pathways in Health and Disease Using an Atlas of the Underlying Anatomy. Frontiers Neuroinformatics 5: 23 (2011) - [j58]David H. Salat, J. Jean Chen, André J. W. van der Kouwe, Douglas N. Greve, Bruce Fischl, H. Diana Rosas:
Hippocampal degeneration is associated with temporal and limbic gray matter/white matter tissue contrast in Alzheimer's disease. NeuroImage 54(3): 1795-1802 (2011) - [j57]Elizabeth C. Leritz, David H. Salat, Victoria J. Williams, David M. Schnyer, James L. Rudolph, Lewis A. Lipsitz, Bruce Fischl, Regina E. McGlinchey, William P. Milberg:
Thickness of the human cerebral cortex is associated with metrics of cerebrovascular health in a normative sample of community dwelling older adults. NeuroImage 54(4): 2659-2671 (2011) - [j56]Zeynep M. Saygin, David E. Osher, Jean Augustinack, Bruce Fischl, John D. E. Gabrieli:
Connectivity-based segmentation of human amygdala nuclei using probabilistic tractography. NeuroImage 56(3): 1353-1361 (2011) - [j55]Martin Reuter, Bruce Fischl:
Avoiding asymmetry-induced bias in longitudinal image processing. NeuroImage 57(1): 19-21 (2011) - [j54]Julien Cohen-Adad, Thomas Benner, Douglas N. Greve, R. P. Kinkel, A. Radding, Bruce Fischl, Bruce R. Rosen, Caterina Mainero:
In vivo evidence of disseminated subpial T2* signal changes in multiple sclerosis at 7 T: A surface-based analysis. NeuroImage 57(1): 55-62 (2011) - 2010
- [j53]Anna Custo, David A. Boas, Daisuke Tsuzuki, Ippeita Dan, Rickson Mesquita, Bruce Fischl, W. Eric L. Grimson, William M. Wells III:
Anatomical atlas-guided diffuse optical tomography of brain activation. NeuroImage 49(1): 561-567 (2010) - [j52]William S. Kremen, Elizabeth Prom-Wormley, Matthew S. Panizzon, Lisa T. Eyler, Bruce Fischl, Michael C. Neale, Carol E. Franz, Michael J. Lyons, Jennifer L. Pacheco, Michele E. Perry, Allison Stevens, J. Eric Schmitt, Michael D. Grant, Larry J. Seidman, Heidi W. Thermenos, Ming T. Tsuang, Seth A. Eisen, Anders M. Dale, Christine Fennema-Notestine:
Genetic and environmental influences on the size of specific brain regions in midlife: The VETSA MRI study. NeuroImage 49(2): 1213-1223 (2010) - [j51]H. Diana Rosas, Stephanie Y. Lee, Alexander C. Bender, Alexandra K. Zaleta, Mark G. Vangel, Peng Yu, Bruce Fischl, Vasanth Pappu, Christina E. Onorato, Jang-Ho Cha, David H. Salat, Steven M. Hersch:
Altered white matter microstructure in the corpus callosum in Huntington's disease: Implications for cortical "disconnection". NeuroImage 49(4): 2995-3004 (2010) - [j50]William S. Kremen, Elizabeth Prom-Wormley, Matthew S. Panizzon, Lisa T. Eyler, Bruce Fischl, Michael C. Neale, Carol E. Franz, Michael J. Lyons, Jennifer L. Pacheco, Michele E. Perry, Allison Stevens, J. Eric Schmitt, Michael D. Grant, Larry J. Seidman, Heidi W. Thermenos, Ming T. Tsuang, Seth A. Eisen, Anders M. Dale, Christine Fennema-Notestine:
Corrigendum to "Genetic and environmental influences on the size of specific brain regions in midlife: The VETSA MRI study": [NeuroImage 49 (2010) 1213-1223]. NeuroImage 49(4): 3499-3502 (2010) - [j49]Lilla Zöllei, Allison Stevens, Kristen Huber, Sita Kakunoori, Bruce Fischl:
Improved tractography alignment using combined volumetric and surface registration. NeuroImage 51(1): 206-213 (2010) - [j48]Arno Klein, Satrajit S. Ghosh, Brian B. Avants, B. T. Thomas Yeo, Bruce Fischl, Babak A. Ardekani, James C. Gee, J. John Mann, Ramin V. Parsey:
Evaluation of volume-based and surface-based brain image registration methods. NeuroImage 51(1): 214-220 (2010) - [j47]Jonathan R. Polimeni, Bruce Fischl, Douglas N. Greve, Lawrence L. Wald:
Laminar analysis of 7 T BOLD using an imposed spatial activation pattern in human V1. NeuroImage 52(4): 1334-1346 (2010) - [j46]Christophe Destrieux, Bruce Fischl, Anders M. Dale, Eric Halgren:
Automatic parcellation of human cortical gyri and sulci using standard anatomical nomenclature. NeuroImage 53(1): 1-15 (2010) - [j45]Satrajit S. Ghosh, Sita Kakunoori, Jean Augustinack, Alfonso Nieto-Castañón, Ioulia Kovelman, Nadine Gaab, Joanna A. Christodoulou, Christina Triantafyllou, John D. E. Gabrieli, Bruce Fischl:
Evaluating the validity of volume-based and surface-based brain image registration for developmental cognitive neuroscience studies in children 4 to 11 years of age. NeuroImage 53(1): 85-93 (2010) - [j44]William S. Kremen, Robert C. O'Brien, Matthew S. Panizzon, Elizabeth Prom-Wormley, Lindon J. Eaves, Seth A. Eisen, Lisa T. Eyler, Richard L. Hauger, Christine Fennema-Notestine, Bruce Fischl, Michael D. Grant, Dirk H. Hellhammer, Amy J. Jak, Kristen C. Jacobson, Terry L. Jernigan, Sonia J. Lupien, Michael J. Lyons, Sally P. Mendoza, Michael C. Neale, Larry J. Seidman, Heidi W. Thermenos, Ming T. Tsuang, Anders M. Dale, Carol E. Franz:
Salivary cortisol and prefrontal cortical thickness in middle-aged men: A twin study. NeuroImage 53(3): 1093-1102 (2010) - [j43]Martin Reuter, H. Diana Rosas, Bruce Fischl:
Highly accurate inverse consistent registration: A robust approach. NeuroImage 53(4): 1181-1196 (2010) - [j42]Anqi Qiu, Timothy Brown, Bruce Fischl, Jun Ma, Michael I. Miller:
Atlas Generation for Subcortical and Ventricular Structures With Its Applications in Shape Analysis. IEEE Trans. Image Process. 19(6): 1539-1547 (2010) - [j41]B. T. Thomas Yeo, Mert R. Sabuncu, Tom Vercauteren, Nicholas Ayache, Bruce Fischl, Polina Golland:
Spherical Demons: Fast Diffeomorphic Landmark-Free Surface Registration. IEEE Trans. Medical Imaging 29(3): 650-668 (2010) - [j40]B. T. Thomas Yeo, Mert R. Sabuncu, Tom Vercauteren, Daphne J. Holt, Katrin Amunts, Karl Zilles, Polina Golland, Bruce Fischl:
Learning Task-Optimal Registration Cost Functions for Localizing Cytoarchitecture and Function in the Cerebral Cortex. IEEE Trans. Medical Imaging 29(7): 1424-1441 (2010) - [j39]Mert R. Sabuncu, B. T. Thomas Yeo, Koenraad Van Leemput, Bruce Fischl, Polina Golland:
A Generative Model for Image Segmentation Based on Label Fusion. IEEE Trans. Medical Imaging 29(10): 1714-1729 (2010) - 2009
- [j38]David H. Salat, Douglas N. Greve, Jennifer L. Pacheco, Brian T. Quinn, Karl G. Helmer, Randy L. Buckner, Bruce Fischl:
Regional white matter volume differences in nondemented aging and Alzheimer's disease. NeuroImage 44(4): 1247-1258 (2009) - [j37]Jorge Jovicich, Silvester Czanner, Xiao Han, David H. Salat, André J. W. van der Kouwe, Brian T. Quinn, Jenni Pacheco, Marilyn S. Albert, Ronald J. Killiany, Deborah Blacker, Ralph Paul Maguire, H. Diana Rosas, Nikos Makris, Randy L. Gollub, Anders M. Dale, Bradford C. Dickerson, Bruce Fischl:
MRI-derived measurements of human subcortical, ventricular and intracranial brain volumes: Reliability effects of scan sessions, acquisition sequences, data analyses, scanner upgrade, scanner vendors and field strengths. NeuroImage 46(1): 177-192 (2009) - [j36]Michael W. L. Chee, Karren H. M. Chen, Hui Zheng, Karen P. L. Chan, Vivian Isaac, Sam K. Y. Sim, Lisa Y. M. Chuah, Maria Schuchinsky, Bruce Fischl, Tze Pin Ng:
Cognitive function and brain structure correlations in healthy elderly East Asians. NeuroImage 46(1): 257-269 (2009) - [j35]Megan L. Blackwell, Christian T. Farrar, Bruce Fischl, Bruce R. Rosen:
Target-specific contrast agents for magnetic resonance microscopy. NeuroImage 46(2): 382-393 (2009) - [j34]Oliver Hinds, Jonathan R. Polimeni, Niranjini Rajendran, Mukund Balasubramanian, Katrin Amunts, Karl Zilles, Eric L. Schwartz, Bruce Fischl, Christina Triantafyllou:
Locating the functional and anatomical boundaries of human primary visual cortex. NeuroImage 46(4): 915-922 (2009) - [j33]Bruce Fischl, Allison Stevens, Niranjini Rajendran, B. T. Thomas Yeo, Douglas N. Greve, Koen Van Leemput, Jonathan R. Polimeni, Sita Kakunoori, Randy L. Buckner, Jennifer L. Pacheco, David H. Salat, Jennifer Melcher, Matthew P. Frosch, Bradley T. Hyman, Patricia Ellen Grant, Bruce R. Rosen, André J. W. van der Kouwe, Graham C. Wiggins, Lawrence L. Wald, Jean Augustinack:
Predicting the location of entorhinal cortex from MRI. NeuroImage 47(1): 8-17 (2009) - [j32]Lars T. Westlye, Kristine B. Walhovd, Anders M. Dale, Thomas Espeseth, Ivar Reinvang, Naftali Raz, Ingrid Agartz, Douglas N. Greve, Bruce Fischl, Anders M. Fjell:
Increased sensitivity to effects of normal aging and Alzheimer's disease on cortical thickness by adjustment for local variability in gray/white contrast: A multi-sample MRI study. NeuroImage 47(4): 1545-1557 (2009) - [j31]David H. Salat, Stephanie Y. Lee, André J. W. van der Kouwe, Douglas N. Greve, Bruce Fischl, H. Diana Rosas:
Age-associated alterations in cortical gray and white matter signal intensity and gray to white matter contrast. NeuroImage 48(1): 21-28 (2009) - [j30]Douglas N. Greve, Bruce Fischl:
Accurate and robust brain image alignment using boundary-based registration. NeuroImage 48(1): 63-72 (2009) - [j29]Gheorghe Postelnicu, Lilla Zöllei, Bruce Fischl:
Combined Volumetric and Surface Registration. IEEE Trans. Medical Imaging 28(4): 508-522 (2009) - 2008
- [j28]Rudolph Pienaar, Bruce Fischl, Verne S. Caviness Jr., Nikos Makris, Patricia Ellen Grant:
A methodology for analyzing curvature in the developing brain from preterm to adult. Int. J. Imaging Syst. Technol. 18(1): 42-68 (2008) - [j27]B. T. Thomas Yeo, Mert R. Sabuncu, Rahul Desikan, Bruce Fischl, Polina Golland:
Effects of registration regularization and atlas sharpness on segmentation accuracy. Medical Image Anal. 12(5): 603-615 (2008) - [j26]Bradford C. Dickerson, E. Fenstermacher, David H. Salat, David A. Wolk, Ralph Paul Maguire, Rahul Desikan, Jennifer L. Pacheco, Brian T. Quinn, André J. W. van der Kouwe, Douglas N. Greve, Deborah Blacker, Marilyn S. Albert, Ronald J. Killiany, Bruce Fischl:
Detection of cortical thickness correlates of cognitive performance: Reliability across MRI scan sessions, scanners, and field strengths. NeuroImage 39(1): 10-18 (2008) - [j25]Oliver Hinds, Niranjini Rajendran, Jonathan R. Polimeni, Jean C. Augustinack, Graham C. Wiggins, Lawrence L. Wald, H. Diana Rosas, Andreas Potthast, Eric L. Schwartz, Bruce Fischl:
Accurate prediction of V1 location from cortical folds in a surface coordinate system. NeuroImage 39(4): 1585-1599 (2008) - [j24]André J. W. van der Kouwe, Thomas Benner, David H. Salat, Bruce Fischl:
Brain morphometry with multiecho MPRAGE. NeuroImage 40(2): 559-569 (2008) - [j23]Kristine B. Walhovd, Vibeke Moe, Kari Slinning, Paulina Due-Tønnessen, Atle Bjørnerud, Anders M. Dale, André J. W. van der Kouwe, Brian T. Quinn, Barry Kosofsky, Douglas N. Greve, Bruce Fischl:
Corrigendum to "Volumetric cerebral characteristics of children exposed to opiates and other substances in utero" [NeuroImage 36 (2007) 1331-1344]. NeuroImage 41(4): 1514-1516 (2008) - [j22]Anders M. Fjell, Lars T. Westlye, Douglas N. Greve, Bruce Fischl, Thomas Benner, André J. W. van der Kouwe, David H. Salat, Atle Bjørnerud, Paulina Due-Tønnessen, Kristine B. Walhovd:
The relationship between diffusion tensor imaging and volumetry as measures of white matter properties. NeuroImage 42(4): 1654-1668 (2008) - 2007
- [j21]Kristine B. Walhovd, Vibeke Moe, Kari Slinning, Paulina Due-Tønnessen, Atle Bjørnerud, Anders M. Dale, André J. W. van der Kouwe, Brian T. Quinn, Barry Kosofsky, Douglas N. Greve, Bruce Fischl:
Volumetric cerebral characteristics of children exposed to opiates and other substances in utero. NeuroImage 36(4): 1331-1344 (2007) - [j20]Dara S. Manoach, G. Avinash Ketwaroo, Frida E. Polli, Katharine N. Thakkar, Jason J. S. Barton, Donald C. Goff, Bruce Fischl, Mark G. Vangel, David S. Tuch:
Reduced microstructural integrity of the white matter underlying anterior cingulate cortex is associated with increased saccadic latency in schizophrenia. NeuroImage 37(2): 599-610 (2007) - [j19]Christine Fennema-Notestine, Anthony Collins Gamst, Brian T. Quinn, Jenni Pacheco, Terry L. Jernigan, Leon Thal, Randy L. Buckner, Ron Killiany, Deborah Blacker, Anders M. Dale, Bruce Fischl, Bradford C. Dickerson, Randy L. Gollub:
Feasibility of Multi-site Clinical Structural Neuroimaging Studies of Aging Using Legacy Data. Neuroinformatics 5(4): 235-245 (2007) - [j18]Xiao Han, Bruce Fischl:
Atlas Renormalization for Improved Brain MR Image Segmentation Across Scanner Platforms. IEEE Trans. Medical Imaging 26(4): 479-486 (2007) - [j17]Florent Ségonne, Jenni Pacheco, Bruce Fischl:
Geometrically Accurate Topology-Correction of Cortical Surfaces Using Nonseparating Loops. IEEE Trans. Medical Imaging 26(4): 518-529 (2007) - [j16]Peng Yu, Patricia Ellen Grant, Yuan Qi, Xiao Han, Florent Ségonne, Rudolph Pienaar, Evelina Busa, Jenni Pacheco, Nikos Makris, Randy L. Buckner, Polina Golland, Bruce Fischl:
Cortical Surface Shape Analysis Based on Spherical Wavelets. IEEE Trans. Medical Imaging 26(4): 582-597 (2007) - 2006
- [j15]Anders M. Fjell, Kristine B. Walhovd, Ivar Reinvang, Arvid Lundervold, David H. Salat, Brian T. Quinn, Bruce Fischl, Anders M. Dale:
Selective increase of cortical thickness in high-performing elderly - structural indices of optimal cognitive aging. NeuroImage 29(3): 984-994 (2006) - [j14]Jorge Jovicich, Silvester Czanner, Douglas N. Greve, Elizabeth Haley, André J. W. van der Kouwe, Randy L. Gollub, David N. Kennedy, Franz Schmitt, Gregory Brown, James R. MacFall, Bruce Fischl, Anders M. Dale:
Reliability in multi-site structural MRI studies: Effects of gradient non-linearity correction on phantom and human data. NeuroImage 30(2): 436-443 (2006) - [j13]Rahul Desikan, Florent Ségonne, Bruce Fischl, Brian T. Quinn, Bradford C. Dickerson, Deborah Blacker, Randy L. Buckner, Anders M. Dale, Ralph Paul Maguire, Bradley T. Hyman, Marilyn S. Albert, Ronald J. Killiany:
An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. NeuroImage 31(3): 968-980 (2006) - [j12]Kristine B. Walhovd, Anders M. Fjell, Anders M. Dale, Bruce Fischl, Brian T. Quinn, Nikos Makris, David H. Salat, Ivar Reinvang:
Regional cortical thickness matters in recall after months more than minutes. NeuroImage 31(3): 1343-1351 (2006) - [j11]Xiao Han, Jorge Jovicich, David H. Salat, André J. W. van der Kouwe, Brian T. Quinn, Silvester Czanner, Evelina Busa, Jenni Pacheco, Marilyn S. Albert, Ronald J. Killiany, Ralph Paul Maguire, H. Diana Rosas, Nikos Makris, Anders M. Dale, Bradford C. Dickerson, Bruce Fischl:
Reliability of MRI-derived measurements of human cerebral cortical thickness: The effects of field strength, scanner upgrade and manufacturer. NeuroImage 32(1): 180-194 (2006) - [j10]Mitsuhiro Nishida, Nikolaos Makris, David N. Kennedy, Mark G. Vangel, Bruce Fischl, Kalpathy S. Krishnamoorthy, Verne S. Caviness Jr., Patricia Ellen Grant:
Detailed semiautomated MRI based morphometry of the neonatal brain: Preliminary results. NeuroImage 32(3): 1041-1049 (2006) - [j9]Irina S. Sigalovsky, Bruce Fischl, Jennifer Melcher:
Mapping an intrinsic MR property of gray matter in auditory cortex of living humans: A possible marker for primary cortex and hemispheric differences. NeuroImage 32(4): 1524-1537 (2006) - [j8]Nikos Makris, Jonathan Kaiser, Christian Haselgrove, Larry J. Seidman, Joseph Biederman, Denise Boriel, Eve M. Valera, George M. Papadimitriou, Bruce Fischl, Verne S. Caviness Jr., David N. Kennedy:
Human cerebral cortex: A system for the integration of volume- and surface-based representations. NeuroImage 33(1): 139-153 (2006) - 2005
- [j7]André J. W. van der Kouwe, Thomas Benner, Bruce Fischl, Franz Schmitt, David H. Salat, Martin Harder, A. Gregory Sorensen, Anders M. Dale:
On-line automatic slice positioning for brain MR imaging. NeuroImage 27(1): 222-230 (2005) - 2004
- [j6]Florent Ségonne, Anders M. Dale, Evelina Busa, Maureen Glessner, David H. Salat, Horst Karl Hahn, Bruce Fischl:
A hybrid approach to the skull stripping problem in MRI. NeuroImage 22(3): 1060-1075 (2004) - 2001
- [j5]Bruce Fischl, Arthur K. Liu, Anders M. Dale:
Automated Manifold Surgery: Constructing Geometrically Accurate and Topologically Correct Models of the Human Cerebral Cortex. IEEE Trans. Medical Imaging 20(1): 70-80 (2001) - 1999
- [j4]Bruce Fischl, Eric L. Schwartz:
Adaptive Nonlocal Filtering: A Fast Alternative to Anisotropic Diffusion for Image Enhancement. IEEE Trans. Pattern Anal. Mach. Intell. 21(1): 42-48 (1999) - 1998
- [j3]Bruce Fischl, Michael A. Cohen, Eric L. Schwartz:
Rapid Anisotropic Diffusion Using Space-Variant Vision. Int. J. Comput. Vis. 28(3): 199-212 (1998) - 1997
- [j2]Bruce Fischl, Michael A. Cohen, Eric L. Schwartz:
The Local Structure of Space-variant Images. Neural Networks 10(5): 815-831 (1997) - [j1]Bruce Fischl, Eric L. Schwartz:
Learning an Integral Equation Approximation to Nonlinear Anisotropic Diffusion in Image Processing. IEEE Trans. Pattern Anal. Mach. Intell. 19(4): 342-352 (1997)
Conference and Workshop Papers
- 2023
- [c45]Iman Aganj, Bruce Fischl:
Intermediate Deformable Image Registration Via Windowed Cross-Correlation. ISBI 2023: 1-5 - [c44]Anees Kazi, Jocelyn S. Mora, Bruce Fischl, Adrian V. Dalca, Iman Aganj:
Multi-head Graph Convolutional Network for Structural Connectome Classification. GRAIL/OCELOT@MICCAI 2023: 27-36 - [c43]Nalini M. Singh, Neel Dey, Malte Hoffmann, Bruce Fischl, Elfar Adalsteinsson, Robert Frost, Adrian V. Dalca, Polina Golland:
Data Consistent Deep Rigid MRI Motion Correction. MIDL 2023: 368-381 - [c42]Jian Li, Greta Tuckute, Evelina Fedorenko, Brian L. Edlow, Bruce Fischl, Adrian V. Dalca:
Joint cortical registration of geometry and function using semi-supervised learning. MIDL 2023: 862-876 - [c41]Malte Hoffmann, Andrew Hoopes, Bruce Fischl, Adrian V. Dalca:
Anatomy-specific acquisition-agnostic affine registration learned from fictitious images. Medical Imaging: Image Processing 2023 - 2022
- [c40]Andrew Hoopes, Juan Eugenio Iglesias, Bruce Fischl, Douglas N. Greve, Adrian V. Dalca:
TopoFit: Rapid Reconstruction of Topologically-Correct Cortical Surfaces. MIDL 2022: 508-520 - [c39]Sean I. Young, Yaël Balbastre, Adrian V. Dalca, William M. Wells III, Juan Eugenio Iglesias, Bruce Fischl:
SuperWarp: Supervised Learning and Warping on U-Net for Invariant Subvoxel-Precise Registration. WBIR 2022: 103-115 - 2021
- [c38]Andrew Hoopes, Malte Hoffmann, Bruce Fischl, John V. Guttag, Adrian V. Dalca:
HyperMorph: Amortized Hyperparameter Learning for Image Registration. IPMI 2021: 3-17 - [c37]Malte Hoffmann, Benjamin Billot, Juan Eugenio Iglesias, Bruce Fischl, Adrian V. Dalca:
Learning Mri Contrast-Agnostic Registration. ISBI 2021: 899-903 - 2020
- [c36]Leonie Henschel, Sailesh Conjeti, Santiago Estrada, Kersten Diers, Bruce Fischl, Martin Reuter:
Abstract: FastSurfer. Bildverarbeitung für die Medizin 2020: 208 - [c35]Iman Aganj, Aina Frau-Pascual, Juan Eugenio Iglesias, Anastasia Yendiki, Jean C. Augustinack, David H. Salat, Bruce Fischl:
Compensatory Brain Connection Discovery in Alzheimer's Disease. ISBI 2020: 283-287 - [c34]Henry F. J. Tregidgo, Adrià Casamitjana, Caitlin Latimer, Mitchell Kilgore, Eleanor D. Robinson, Emily Blackburn, Koen Van Leemput, Bruce Fischl, Adrian V. Dalca, Christine L. Mac Donald, Dirk Keene, Juan Eugenio Iglesias:
3D Reconstruction and Segmentation of Dissection Photographs for MRI-Free Neuropathology. MICCAI (5) 2020: 204-214 - [c33]Benjamin Billot, Douglas N. Greve, Koen Van Leemput, Bruce Fischl, Juan Eugenio Iglesias, Adrian V. Dalca:
A Learning Strategy for Contrast-agnostic MRI Segmentation. MIDL 2020: 75-93 - 2019
- [c32]Aina Frau-Pascual, Jean Augustinack, Divya Varadarajan, Anastasia Yendiki, Bruce Fischl, Iman Aganj:
Detecting Structural Brain Connectivity Differences in Dementia Through a Conductance Model. ACSSC 2019: 591-595 - [c31]Iman Aganj, Bruce Fischl:
Expected Label Value Computation for Atlas-Based Image Segmentation. ISBI 2019: 334-338 - [c30]Adrian V. Dalca, Evan M. Yu, Polina Golland, Bruce Fischl, Mert R. Sabuncu, Juan Eugenio Iglesias:
Unsupervised Deep Learning for Bayesian Brain MRI Segmentation. MICCAI (3) 2019: 356-365 - 2018
- [c29]Juan Eugenio Iglesias, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren:
Model-Based Refinement of Nonlinear Registrations in 3D Histology Reconstruction. MICCAI (2) 2018: 147-155 - [c28]Amod Jog, Bruce Fischl:
Pulse Sequence Resilient Fast Brain Segmentation. MICCAI (3) 2018: 654-662 - 2016
- [c27]Subhranil Koley, Chandan Chakraborty, Caterina Mainero, Bruce Fischl, Iman Aganj:
A Fast Approach to Automatic Detection of Brain Lesions. BrainLes@MICCAI 2016: 52-61 - [c26]Viviana Siless, Ken Chang, Bruce Fischl, Anastasia Yendiki:
Hierarchical Clustering of Tractography Streamlines Based on Anatomical Similarity. MICCAI (1) 2016: 184-191 - 2015
- [c25]Iman Aganj, Juan Eugenio Iglesias, Martin Reuter, Mert R. Sabuncu, Bruce Fischl:
Mid-Space-Independent Symmetric Data Term for Pairwise Deformable Image Registration. MICCAI (2) 2015: 263-271 - 2013
- [c24]Iman Aganj, Martin Reuter, Mert R. Sabuncu, Bruce Fischl:
Symmetric non-rigid image registration via an adaptive quasi-volume-preserving constraint. ISBI 2013: 230-233 - [c23]Ender Konukoglu, André J. W. van der Kouwe, Mert Rory Sabuncu, Bruce Fischl:
Example-Based Restoration of High-Resolution Magnetic Resonance Image Acquisitions. MICCAI (1) 2013: 131-138 - [c22]Juan Eugenio Iglesias, Ender Konukoglu, Darko Zikic, Ben Glocker, Koen Van Leemput, Bruce Fischl:
Is Synthesizing MRI Contrast Useful for Inter-modality Analysis? MICCAI (1) 2013: 631-638 - 2011
- [c21]Maria Ida Iacono, Nikos Makris, Luca T. Mainardi, John T. Gale, André J. W. van der Kouwe, Azma Mareyam, Jonathan R. Polimeni, Lawrence L. Wald, Bruce Fischl, Emad N. Eskandar, Giorgio Bonmassar:
Atlas-based segmentation for globus pallidus internus targeting on low-resolution MRI. EMBC 2011: 5706-5709 - 2009
- [c20]Anastasia Yendiki, Allison Stevens, Jean Augustinack, David H. Salat, Lilla Zöllei, Bruce Fischl:
Anatomical Priors for Global Probabilistic Diffusion Tractography. ISBI 2009: 630-633 - [c19]B. T. Thomas Yeo, Mert R. Sabuncu, Polina Golland, Bruce Fischl:
Task-Optimal Registration Cost Functions. MICCAI (1) 2009: 598-606 - [c18]Mert R. Sabuncu, B. T. Thomas Yeo, Koen Van Leemput, Bruce Fischl, Polina Golland:
Supervised Nonparametric Image Parcellation. MICCAI (1) 2009: 1075-1083 - 2008
- [c17]Koen Van Leemput, Akram Bakkour, Thomas Benner, Graham C. Wiggins, Lawrence L. Wald, Jean Augustinack, Bradford C. Dickerson, Polina Golland, Bruce Fischl:
Model-Based Segmentation of Hippocampal Subfields in Ultra-High Resolution In Vivo MRI. MICCAI (1) 2008: 235-243 - [c16]B. T. Thomas Yeo, Peng Yu, Patricia Ellen Grant, Bruce Fischl, Polina Golland:
Shape Analysis with Overcomplete Spherical Wavelets. MICCAI (1) 2008: 468-476 - [c15]B. T. Thomas Yeo, Mert R. Sabuncu, Tom Vercauteren, Nicholas Ayache, Bruce Fischl, Polina Golland:
Spherical Demons: Fast Surface Registration. MICCAI (1) 2008: 745-753 - 2007
- [c14]Biswajit Bose, John W. Fisher III, Bruce Fischl, Oliver Hinds, Eric Grimson:
Detecting Cortical Surface Regions in Structural MR Data. ICCV 2007: 1-8 - [c13]B. T. Thomas Yeo, Mert R. Sabuncu, Hartmut Mohlberg, Katrin Amunts, Karl Zilles, Polina Golland, Bruce Fischl:
What Data to Co-register for Computing Atlases. ICCV 2007: 1-8 - [c12]Peng Yu, B. T. Thomas Yeo, Patricia Ellen Grant, Bruce Fischl, Polina Golland:
Cortical Folding Development Study based on Over-Complete Spherical Wavelets. ICCV 2007: 1-8 - [c11]Gheorghe Postelnicu, Lilla Zöllei, Rahul Desikan, Bruce Fischl:
Geometry Driven Volumetric Registration. IPMI 2007: 675-686 - [c10]B. T. Thomas Yeo, Mert R. Sabuncu, Rahul Desikan, Bruce Fischl, Polina Golland:
Effects of Registration Regularization and Atlas Sharpness on Segmentation Accuracy. MICCAI (1) 2007: 683-691 - 2006
- [c9]Peng Yu, Xiao Han, Florent Ségonne, Rudolph Pienaar, Randy L. Buckner, Polina Golland, Patricia Ellen Grant, Bruce Fischl:
Cortical Surface Shape Analysis Based on Spherical Wavelet Transformation. CVPR Workshops 2006: 60 - [c8]Peng Yu, Xiao Han, Florent Ségonne, Arthur K. Liu, Russell A. Poldrack, Polina Golland, Bruce Fischl:
Shape-based Discrimination and Classification of Cortical Surfaces. ICPR (3) 2006: 445-448 - 2005
- [c7]Florent Ségonne, Jean-Philippe Pons, W. Eric L. Grimson, Bruce Fischl:
Active Contours Under Topology Control Genus Preserving Level Sets. CVBIA 2005: 135-145 - [c6]Florent Ségonne, W. Eric L. Grimson, Bruce Fischl:
A Genetic Algorithm for the Topology Correction of Cortical Surfaces. IPMI 2005: 393-405 - 2003
- [c5]Polina Golland, Bruce Fischl:
Permutation Tests for Classification: Towards Statistical Significance in Image-Based Studies. IPMI 2003: 330-341 - [c4]Florent Ségonne, W. Eric L. Grimson, Bruce Fischl:
Topological Correction of Subcortical Segmentation. MICCAI (2) 2003: 695-702 - 2002
- [c3]Polina Golland, Bruce Fischl, Mona Spiridon, Nancy Kanwisher, Randy L. Buckner, Martha Elizabeth Shenton, Ron Kikinis, Anders M. Dale, W. Eric L. Grimson:
Discriminative Analysis for Image-Based Studies. MICCAI (1) 2002: 508-515 - 1997
- [c2]Bruce Fischl, Eric L. Schwartz:
Fast Adaptive Alternatives to Nonlinear Diffusion in Image Enhancement: Green's Function Approximators and Nonlocal Filters. Scale-Space 1997: 327-332 - 1996
- [c1]Bruce Fischl, Eric L. Schwartz:
Learned adaptive nonlinear filtering for anisotropic diffusion approximation in image processing. ICPR 1996: 276-280
Informal and Other Publications
- 2024
- [i27]William Kelley, Nathan Ngo, Adrian V. Dalca, Bruce Fischl, Lilla Zöllei, Malte Hoffmann:
Boosting Skull-Stripping Performance for Pediatric Brain Images. CoRR abs/2402.16634 (2024) - 2023
- [i26]Nalini M. Singh, Neel Dey, Malte Hoffmann, Bruce Fischl, Elfar Adalsteinsson, Robert Frost, Adrian V. Dalca, Polina Golland:
Data Consistent Deep Rigid MRI Motion Correction. CoRR abs/2301.10365 (2023) - [i25]Malte Hoffmann, Andrew Hoopes, Douglas N. Greve, Bruce Fischl, Adrian V. Dalca:
Anatomy-aware and acquisition-agnostic joint registration with SynthMorph. CoRR abs/2301.11329 (2023) - [i24]Jian Li, Greta Tuckute, Evelina Fedorenko, Brian L. Edlow, Bruce Fischl, Adrian V. Dalca:
Joint cortical registration of geometry and function using semi-supervised learning. CoRR abs/2303.01592 (2023) - [i23]Anees Kazi, Jocelyn S. Mora, Bruce Fischl, Adrian V. Dalca, Iman Aganj:
Multi-Head Graph Convolutional Network for Structural Connectome Classification. CoRR abs/2305.02199 (2023) - [i22]Jian Li, Greta Tuckute, Evelina Fedorenko, Brian L. Edlow, Adrian V. Dalca, Bruce Fischl:
JOSA: Joint surface-based registration and atlas construction of brain geometry and function. CoRR abs/2311.08544 (2023) - [i21]Sean I. Young, Yaël Balbastre, Bruce Fischl, Polina Golland, Juan Eugenio Iglesias:
Fully Convolutional Slice-to-Volume Reconstruction for Single-Stack MRI. CoRR abs/2312.03102 (2023) - 2022
- [i20]Sean I. Young, Adrian V. Dalca, Enzo Ferrante, Polina Golland, Bruce Fischl, Juan Eugenio Iglesias:
SUD: Supervision by Denoising for Medical Image Segmentation. CoRR abs/2202.02952 (2022) - [i19]Andrew Hoopes, Jocelyn S. Mora, Adrian V. Dalca, Bruce Fischl, Malte Hoffmann:
SynthStrip: Skull-Stripping for Any Brain Image. CoRR abs/2203.09974 (2022) - [i18]Andrew Hoopes, Malte Hoffmann, Douglas N. Greve, Bruce Fischl, John V. Guttag, Adrian V. Dalca:
Learning the Effect of Registration Hyperparameters with HyperMorph. CoRR abs/2203.16680 (2022) - [i17]Sean I. Young, Yaël Balbastre, Adrian V. Dalca, William M. Wells III, Juan Eugenio Iglesias, Bruce Fischl:
SuperWarp: Supervised Learning and Warping on U-Net for Invariant Subvoxel-Precise Registration. CoRR abs/2205.07399 (2022) - 2021
- [i16]Andrew Hoopes, Malte Hoffmann, Bruce Fischl, John V. Guttag, Adrian V. Dalca:
HyperMorph: Amortized Hyperparameter Learning for Image Registration. CoRR abs/2101.01035 (2021) - [i15]Adrià Casamitjana, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias:
Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas. CoRR abs/2104.14873 (2021) - [i14]Divya Varadarajan, Katherine L. Bouman, André J. W. van der Kouwe, Bruce Fischl, Adrian V. Dalca:
Unsupervised learning of MRI tissue properties using MRI physics models. CoRR abs/2107.02704 (2021) - [i13]Benjamin Billot, Douglas N. Greve, Oula Puonti, Axel Thielscher, Koen Van Leemput, Bruce Fischl, Adrian V. Dalca, Juan Eugenio Iglesias:
SynthSeg: Domain Randomisation for Segmentation of Brain MRI Scans of any Contrast and Resolution. CoRR abs/2107.09559 (2021) - 2020
- [i12]Benjamin Billot, Douglas N. Greve, Koen Van Leemput, Bruce Fischl, Juan Eugenio Iglesias, Adrian V. Dalca:
A Learning Strategy for Contrast-agnostic MRI Segmentation. CoRR abs/2003.01995 (2020) - [i11]Jieyu Cheng, Adrian V. Dalca, Bruce Fischl, Lilla Zöllei:
Cortical surface registration using unsupervised learning. CoRR abs/2004.04617 (2020) - [i10]Malte Hoffmann, Benjamin Billot, Juan Eugenio Iglesias, Bruce Fischl, Adrian V. Dalca:
Learning Multi-Modal Image Registration without Real Data. CoRR abs/2004.10282 (2020) - [i9]Henry F. J. Tregidgo, Adria Casamitjana, Caitlin Latimer, Mitchell Kilgore, Eleanor D. Robinson, Emily Blackburn, Koen Van Leemput, Bruce Fischl, Adrian V. Dalca, Christine L. Mac Donald, Dirk Keene, Juan Eugenio Iglesias:
3D Reconstruction and Segmentation of Dissection Photographs for MRI-free Neuropathology. CoRR abs/2009.05596 (2020) - [i8]Juan Eugenio Iglesias, Benjamin Billot, Yaël Balbastre, Azadeh Tabari, John Conklin, Daniel C. Alexander, Polina Golland, Brian L. Edlow, Bruce Fischl:
Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast. CoRR abs/2012.13340 (2020) - 2019
- [i7]Amod Jog, Andrew Hoopes, Douglas N. Greve, Koen Van Leemput, Bruce Fischl:
PSACNN: Pulse Sequence Adaptive Fast Whole Brain Segmentation. CoRR abs/1901.05992 (2019) - [i6]Adrian V. Dalca, Evan M. Yu, Polina Golland, Bruce Fischl, Mert R. Sabuncu, Juan Eugenio Iglesias:
Unsupervised deep learning for Bayesian brain MRI segmentation. CoRR abs/1904.11319 (2019) - [i5]Amod Jog, Patricia Ellen Grant, Joseph L. Jacobson, André J. W. van der Kouwe, Ernesta M. Meintjes, Bruce Fischl, Lilla Zöllei:
Fast Infant MRI Skullstripping with Multiview 2D Convolutional Neural Networks. CoRR abs/1904.12101 (2019) - [i4]Leonie Henschel, Sailesh Conjeti, Santiago Estrada, Kersten Diers, Bruce Fischl, Martin Reuter:
FastSurfer - A fast and accurate deep learning based neuroimaging pipeline. CoRR abs/1910.03866 (2019) - 2018
- [i3]Juan Eugenio Iglesias, Marc Modat, Loïc Peter, Allison Stevens, Roberto Annunziata, Tom Vercauteren, Ed S. Lein, Bruce Fischl, Sébastien Ourselin:
Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections. CoRR abs/1801.05284 (2018) - [i2]Juan Eugenio Iglesias, Ricardo Insausti, Garikoitz Lerma-Usabiaga, Martina Bocchetta, Koen Van Leemput, Douglas N. Greve, André J. W. van der Kouwe, Bruce Fischl, César Caballero-Gaudes, Pedro M. Paz-Alonso:
A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology. CoRR abs/1806.08634 (2018) - [i1]Amod Jog, Bruce Fischl:
Pulse Sequence Resilient Fast Brain Segmentation. CoRR abs/1807.11598 (2018)
Coauthor Index
Jean Augustinack
aka: Jean C. Augustinack
aka: Jean C. Augustinack
Koenraad Van Leemput
aka: Koen Van Leemput
aka: Koen Van Leemput
Mert R. Sabuncu
aka: Mert Rory Sabuncu
aka: Mert Rory Sabuncu
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