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Journal Articles
- 2022
[j17]Elizabeth A. Bartlett, R. Todd Ogden, J. John Mann, Francesca Zanderigo:
Source-to-Target Automatic Rotating Estimation (STARE) - A publicly-available, blood-free quantification approach for PET tracers with irreversible kinetics: Theoretical framework and validation for [18F]FDG. NeuroImage 249: 118901 (2022)- 2021
- [j16]Braja Gopal Patra
, Mohit M. Sharma, Veer Vekaria, Prakash Adekkanattu, Olga V. Patterson, Benjamin S. Glicksberg, Lauren A. Lepow, Euijung Ryu, Joanna M. Biernacka, Al'ona Furmanchuk, Thomas J. George, William R. Hogan, Yonghui Wu, Xi Yang, Jiang Bian, Myrna Weissman, Priya Wickramaratne, J. John Mann, Mark Olfson, Thomas R. Campion Jr., Mark G. Weiner, Jyotishman Pathak:
Extracting social determinants of health from electronic health records using natural language processing: a systematic review. J. Am. Medical Informatics Assoc. 28(12): 2716-2727 (2021) - 2019
- [j15]D. R. Sherin, C. K. Geethu, Jaya Prabhakaran, J. John Mann, J. S. Dileep Kumar, T. K. Manojkumar:
Molecular docking, dynamics simulations and 3D-QSAR modeling of arylpiperazine derivatives of 3, 5-dioxo-(2H, 4H)-1, 2, 4-triazine as 5-HT1AR agonists. Comput. Biol. Chem. 78: 108-115 (2019) - [j14]Elisa Roccia, Arthur Mikhno, R. Todd Ogden, J. John Mann, Andrew F. Laine, Elsa D. Angelini, Francesca Zanderigo:
Quantifying Brain [18F]FDG Uptake Noninvasively by Combining Medical Health Records and Dynamic PET Imaging Data. IEEE J. Biomed. Health Informatics 23(6): 2576-2582 (2019) - 2017
- [j13]Martin Schain, Francesca Zanderigo, J. John Mann, R. Todd Ogden:
Estimation of the binding potential BPND without a reference region or blood samples for brain PET studies. NeuroImage 146: 121-131 (2017) - 2015
- [j12]Arthur Mikhno, Francesca Zanderigo, R. Todd Ogden, J. John Mann, Elsa D. Angelini, Andrew F. Laine, Ramin V. Parsey:
Toward Noninvasive Quantification of Brain Radioligand Binding by Combining Electronic Health Records and Dynamic PET Imaging Data. IEEE J. Biomed. Health Informatics 19(4): 1271-1282 (2015) - 2014
- [j11]Martin J. Lan, R. Todd Ogden, Yung-yu Huang, Maria A. Oquendo, Gregory M. Sullivan, Jeffrey Miller, Matthew Milak, J. John Mann, Ramin V. Parsey:
Genetic variation in brain-derived neurotrophic factor val66met allele is associated with altered serotonin-1A receptor binding in human brain. NeuroImage 94: 33-39 (2014) - 2010
- [j10]Arno Klein, Satrajit S. Ghosh, Brian B. Avants, B. T. Thomas Yeo, Bruce Fischl, Babak A. Ardekani, James C. Gee, J. John Mann, Ramin V. Parsey:
Evaluation of volume-based and surface-based brain image registration methods. NeuroImage 51(1): 214-220 (2010) - [j9]Christine DeLorenzo, Sarah Lichenstein, Karen E. Schaefer, Judith Dunn, Randall Marshall, Brigitte Robertson, J. John Mann, Ramin V. Parsey:
Evaluation of SEP-225289 transporter occupancy using positron emission tomography. NeuroImage 52(Supplement-1): S104-S105 (2010) - [j8]Christine DeLorenzo, Dileep J. S. Kumar, Johannes T. Tauscher, J. John Mann, Ramin V. Parsey:
In vivo variation in metabotropic glutamate receptor subtype 5 binding using [11C]ABP688. NeuroImage 52(Supplement-1): S17 (2010) - [j7]Francesca Zanderigo, R. Todd Ogden, J. John Mann, Ramin V. Parsey:
A voxel-based clustering approach for the automatic selection of testing regions in the simultaneous estimation of input functions in PET. NeuroImage 52(Supplement-1): S176 (2010) - [j6]R. Todd Ogden, Thaddeus Tarpey, J. John Mann, Ramin V. Parsey:
Evaluating sources of variation in kinetic modeling using an input function via the bootstrap. NeuroImage 52(Supplement-1): S208 (2010) - [j5]Jeffrey Miller, Matthew Milak, R. Todd Ogden, Dileep J. S. Kumar, Ramin V. Parsey, J. John Mann:
Suicide risk detection with PET WAY and DASB. NeuroImage 52(Supplement-1): S65 (2010) - [j4]Mikael Palner, Mark D. Underwood, Dileep J. S. Kumar, Victoria Arango, Gitte Moos Knudsen, J. John Mann, Ramin V. Parsey:
Binding saturation with the serotonin 1A receptor agonist [H-3]CUMI-101 and the antagonist [H-3]MPPF, in awake rats. NeuroImage 52(Supplement-1): S70 (2010) - 2009
- [j3]Arno Klein, Jesper L. R. Andersson, Babak A. Ardekani, John Ashburner, Brian B. Avants, Ming-Chang Chiang, Gary E. Christensen, D. Louis Collins, James C. Gee, Pierre Hellier, Joo Hyun Song, Mark Jenkinson, Claude Lepage, Daniel Rueckert, Paul M. Thompson, Tom Vercauteren, Roger P. Woods, J. John Mann, Ramin V. Parsey:
Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. NeuroImage 46(3): 786-802 (2009) - 2004
- [j2]Marie-José Bélanger, J. John Mann, Ramin V. Parsey:
OS-EM and FBP reconstructions at low count rates: effect on 3D PET studies of [11C] WAY-100635. NeuroImage 21(1): 244-250 (2004) - 2003
- [j1]Hanga C. Galfalvy, Loubna Erraji-Benchekroun, Peggy Smyrniotopoulos, Paul Pavlidis, Steven P. Ellis, J. John Mann, Etienne Sibille, Victoria Arango:
Sex genes for genomic analysis in human brain: internal controls for comparison of probe level data extraction. BMC Bioinform. 4: 37 (2003)
Conference and Workshop Papers
- 2021
- [c6]Lauren A. Lepow, Braja Gopal Patra, Isotta Landi, Prakash Adekkanattu, Jyotishman Pathak, Mark Olfson, J. John Mann, Euijung Ryu, Joanna M. Biernacka, Girish N. Nadkarni, Priya Wickramaratne, Myrna Weissman, Benjamin S. Glicksberg, Alexander Charney:
Extracting Social Isolation Information From Psychiatric Notes in the Electronic Health Records. AMIA 2021 - 2019
- [c5]Matteo Tonietto, Francesca Zanderigo, Alessandra Bertoldo, Davangere P. Devanand, J. John Mann, Benedetta Bodini, Bruno Stankoff:
Multicenter Validation Of Population-Based Input Function With Non-Linear Mixed Effect Modeling For Voxel-Wise Quantification Of [18F]Fdg Metabolic Rate. ISBI 2019: 376-379 - 2015
- [c4]Elisa Roccia, Arthur Mikhno, Francesca Zanderigo, Elsa D. Angelini, R. Todd Ogden, J. John Mann, Andrew F. Laine:
Non-invasive quantification of brain [18F]-FDG uptake by combining medical health records and dynamic PET imaging data. EMBC 2015: 2243-2246 - 2014
- [c3]Arthur Mikhno, Francesca Zanderigo, R. Todd Ogden, Michelle Mikhno, Harry Nagendra, J. John Mann, Andrew F. Laine, Ramin V. Parsey:
Combining brain imaging data with electronic health records to non-invasively quantify [11C]DASB binding. BHI 2014: 732-735 - 2009
- [c2]Christine DeLorenzo, Arno Klein, Arthur Mikhno, Neil Gray, Francesca Zanderigo, J. John Mann, Ramin V. Parsey:
A new method for assessing PET-MRI coregistration. Medical Imaging: Image Processing 2009: 72592W - 2006
- [c1]Kjell Erlandsson, Yinpeng Jin, Andrew T. Wong, Peter D. Esser, Andrew F. Laine, R. Todd Ogden, Maria A. Oquendo, Ronald L. Van Heertum, J. John Mann, Ramin V. Parsey:
Quantitative wavelet domain image processing of dynamic PET data. EMBC 2006: 2787-2790
Informal and Other Publications
- 2024
- [i1]Braja Gopal Patra, Lauren A. Lepow, Praneet Kasi Reddy Jagadeesh Kumar, Veer Vekaria, Mohit Manoj Sharma, Prakash Adekkanattu, Brian Fennessy, Gavin Hynes, Isotta Landi, Jorge A. Sanchez-Ruiz, Euijung Ryu, Joanna M. Biernacka, Girish N. Nadkarni, Ardesheer Talati, Myrna Weissman, Mark Olfson, J. John Mann, Alexander W. Charney, Jyotishman Pathak:
Extracting Social Support and Social Isolation Information from Clinical Psychiatry Notes: Comparing a Rule-based NLP System and a Large Language Model. CoRR abs/2403.17199 (2024)
Coauthor Index
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