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Tieliu Shi
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Journal Articles
- 2023
- [j23]Jun Wu, Haipeng Qing, Jian Ouyang, Jiajia Zhou, Zihao Gao, Christopher E. Mason, Zhichao Liu, Tieliu Shi:
HiFun: homology independent protein function prediction by a novel protein-language self-attention model. Briefings Bioinform. 24(5) (2023) - [j22]Jun Wu, Jian Ouyang, Haipeng Qing, Jiajia Zhou, Ruth Roberts, Rania Siam, Lan Wang, Weida Tong, Zhichao Liu, Tieliu Shi:
PLM-ARG: antibiotic resistance gene identification using a pretrained protein language model. Bioinform. 39(11) (2023) - [j21]Xiangjun Ji, Junwei Cai, Lixin Liang, Tieliu Shi, Jinghua Liu:
Gene expression variability across cells and species shapes the relationship between renal resident macrophages and infiltrated macrophages. BMC Bioinform. 24(1): 72 (2023) - 2021
- [j20]Yiheng Lan, Ruikun Sun, Jian Ouyang, Wubin Ding, Min-Jun Kim, Jun Wu, Yuhua Li, Tieliu Shi:
AtMAD: Arabidopsis thaliana multi-omics association database. Nucleic Acids Res. 49(Database-Issue): D1445-D1451 (2021) - 2020
- [j19]Wubin Ding, Jiwei Chen, Guoshuang Feng, Geng Chen, Jun Wu, Yongli Guo, Xin Ni, Tieliu Shi:
DNMIVD: DNA methylation interactive visualization database. Nucleic Acids Res. 48(Database-Issue): D856-D862 (2020) - 2018
- [j18]Lin Huang, Duoli Xie, Yiran Yu, Huanlong Liu, Yan Shi, Tieliu Shi, Chengping Wen:
TCMID 2.0: a comprehensive resource for TCM. Nucleic Acids Res. 46(Database-Issue): D1117-D1120 (2018) - [j17]Jinmeng Jia, Zhongxin An, Yue Ming, Yongli Guo, Wei Li, Yunxiang Liang, Dongming Guo, Xin Li, Jun Tai, Geng Chen, Yaqiong Jin, Zhimei Liu, Xin Ni, Tieliu Shi:
eRAM: encyclopedia of rare disease annotations for precision medicine. Nucleic Acids Res. 46(Database-Issue): D937-D943 (2018) - [j16]Jinmeng Jia, Zhongxin An, Yue Ming, Yongli Guo, Wei Li, Xin Li, Yunxiang Liang, Dongming Guo, Jun Tai, Geng Chen, Yaqiong Jin, Zhimei Liu, Xin Ni, Tieliu Shi:
PedAM: a database for Pediatric Disease Annotation and Medicine. Nucleic Acids Res. 46(Database-Issue): D977-D983 (2018) - 2017
- [j15]Qi Lv, Yiheng Lan, Yan Shi, Huan Wang, Xia Pan, Peng Li, Tieliu Shi:
AtPID: a genome-scale resource for genotype-phenotype associations in Arabidopsis. Nucleic Acids Res. 45(Database-Issue): D1060-D1063 (2017) - [j14]Ruifang Cao, Yan Shi, Shuangguan Chen, Yimin Ma, Jiajun Chen, Juan Yang, Geng Chen, Tieliu Shi:
dbSAP: single amino-acid polymorphism database for protein variation detection. Nucleic Acids Res. 45(Database-Issue): D827-D832 (2017) - 2016
- [j13]Yu Du, Tieliu Shi:
Ligand cluster-based protein network and ePlatton, a multi-target ligand finder. J. Cheminformatics 8(1): 23:1-23:12 (2016) - 2015
- [j12]Peng Li, Yongrui Liu, Huan Wang, Yuan He, Xue Wang, Yundong He, Fang Lv, Huaqing Chen, Xiufeng Pang, Mingyao Liu, Tieliu Shi, Zhengfang Yi:
PubAngioGen: a database and knowledge for angiogenesis and related diseases. Nucleic Acids Res. 43(Database-Issue): 963-967 (2015) - 2014
- [j11]Pengzhan Hu, Zhongchao Shen, Haibo Tu, Li Zhang, Tieliu Shi:
Integrating multiple resources to identify specific transcriptional cooperativity with a Bayesian approach. Bioinform. 30(6): 823-830 (2014) - 2013
- [j10]Ruichao Xue, Zhao Fang, Meixia Zhang, Zhenghui Yi, Chengping Wen, Tieliu Shi:
TCMID: traditional Chinese medicine integrative database for herb molecular mechanism analysis. Nucleic Acids Res. 41(Database-Issue): 1089-1095 (2013) - 2011
- [j9]Feng Xu, Chen Zhao, Yuhua Li, Jiang Li, Youping Deng, Tieliu Shi:
Exploring virus relationships based on virus-host protein-protein interaction network. BMC Syst. Biol. 5(S-3): S11 (2011) - [j8]Jigang Wang, Xiaojie Qiu, Yuhua Li, Youping Deng, Tieliu Shi:
A transcriptional dynamic network during Arabidopsis thaliana pollen development. BMC Syst. Biol. 5(S-3): S8 (2011) - [j7]Peng Li, Weidong Zang, Yuhua Li, Feng Xu, Jigang Wang, Tieliu Shi:
AtPID: the overall hierarchical functional protein interaction network interface and analytic platform for Arabidopsis. Nucleic Acids Res. 39(Database-Issue): 1130-1133 (2011) - 2010
- [j6]Lishan Wang, Yuanyuan Xiong, Yihua Sun, Zhaoyuan Fang, Li Li, Hongbin Ji, Tieliu Shi:
HLungDB: an integrated database of human lung cancer research. Nucleic Acids Res. 38(Database-Issue): 665-669 (2010) - 2008
- [j5]Jian Cui, Peng Li, Guang Li, Feng Xu, Chen Zhao, Yuhua Li, Zhongnan Yang, Guang Wang, Qingbo Yu, Yi-Xue Li, Tieliu Shi:
AtPID: Arabidopsis thaliana protein interactome database - an integrative platform for plant systems biology. Nucleic Acids Res. 36(Database-Issue): 999-1008 (2008) - 2007
- [j4]Jingchun Sun, Yan Sun, Guohui Ding, Qi Liu, Chuan Wang, Youyu He, Tieliu Shi, Yixue Li, Zhongming Zhao:
InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes. BMC Bioinform. 8 (2007) - 2006
- [j3]Peilin Jia, Tieliu Shi, Yudong Cai, Yixue Li:
Demonstration of two novel methods for predicting functional siRNA efficiency. BMC Bioinform. 7: 271 (2006) - [j2]Guohui Ding, Jiuhong Kang, Qi Liu, Tieliu Shi, Gang Pei, Yixue Li:
Insights into the Coupling of Duplication Events and Macroevolution from an Age Profile of Animal Transmembrane Gene Families. PLoS Comput. Biol. 2(8) (2006) - 2005
- [j1]Jingchun Sun, Jinlin Xu, Zhen Liu, Qi Liu, Aimin Zhao, Tieliu Shi, Yi-Xue Li:
Refined phylogenetic profiles method for predicting protein-protein interactions. Bioinform. 21(16): 3409-3415 (2005)
Coauthor Index
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