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Journal Articles
- 2023
[j24]Andrew Banman, Nikita A. Sakhanenko
, James Kunert-Graf, David J. Galas:
ApoE Modifier Alleles for Alzheimer's Disease Discovered by Information Theory Dependency Measures: MIST Software Package. J. Comput. Biol. 30(3): 323-336 (2023)- 2021
- [j23]James M. Kunert-Graf, Nikita A. Sakhanenko, David J. Galas:
Optimized permutation testing for information theoretic measures of multi-gene interactions. BMC Bioinform. 22(1): 180 (2021) - [j22]David J. Galas, James Kunert-Graf, Lisa Uechi, Nikita A. Sakhanenko:
Toward an Information Theory of Quantitative Genetics. J. Comput. Biol. 28(6): 527-559 (2021) - 2020
- [j21]James Kunert-Graf, Nikita A. Sakhanenko, David J. Galas:
Partial Information Decomposition and the Information Delta: A Geometric Unification Disentangling Non-Pairwise Information. Entropy 22(12): 1333 (2020) - 2019
- [j20]David J. Galas, Nikita A. Sakhanenko:
Symmetries among Multivariate Information Measures Explored Using Möbius Operators. Entropy 21(1): 88 (2019) - [j19]James M. Kunert-Graf, Kristian M. Eschenburg, David J. Galas, J. Nathan Kutz, Swati D. Rane, Bingni W. Brunton:
Extracting Reproducible Time-Resolved Resting State Networks Using Dynamic Mode Decomposition. Frontiers Comput. Neurosci. 13: 75 (2019) - [j18]Lisa Uechi, David J. Galas, Nikita A. Sakhanenko:
Multivariate Analysis of Data Sets with Missing Values: An Information Theory-Based Reliability Function. J. Comput. Biol. 26(2): 152-171 (2019) - 2017
- [j17]David J. Galas, T. Gregory Dewey, James Kunert-Graf, Nikita A. Sakhanenko:
Expansion of the Kullback-Leibler Divergence, and a New Class of Information Metrics. Axioms 6(2): 8 (2017) - [j16]James Kunert-Graf, Nikita A. Sakhanenko, David J. Galas:
Complexity and Vulnerability Analysis of the C. Elegans Gap Junction Connectome. Entropy 19(3): 104 (2017) - [j15]Nikita A. Sakhanenko, James Kunert-Graf, David J. Galas:
The Information Content of Discrete Functions and Their Application in Genetic Data Analysis. J. Comput. Biol. 24(12): 1153-1178 (2017) - 2015
- [j14]Nikita A. Sakhanenko, David J. Galas:
Biological Data Analysis as an Information Theory Problem: Multivariable Dependence Measures and the Shadows Algorithm. J. Comput. Biol. 22(11): 1005-1024 (2015) - 2014
- [j13]David J. Galas, Nikita A. Sakhanenko, Alexander Skupin, Tomasz M. Ignac:
Describing the Complexity of Systems: Multivariable "Set Complexity" and the Information Basis of Systems Biology. J. Comput. Biol. 21(2): 118-140 (2014) - 2013
- [j12]Paul T. Shannon, Mark L. Grimes, Burak Kutlu, Jan J. Bot, David J. Galas:
RCytoscape: tools for exploratory network analysis. BMC Bioinform. 14: 217 (2013) - 2012
- [j11]Tomasz M. Ignac, Nikita A. Sakhanenko, David J. Galas:
Complexity of networks II: The set complexity of edge-colored graphs. Complex. 17(5): 23-36 (2012) - [j10]Tomasz M. Ignac, Nikita A. Sakhanenko, David J. Galas:
Relations between the set-complexity and the structure of graphs and their sub-graphs. EURASIP J. Bioinform. Syst. Biol. 2012: 13 (2012) - [j9]Nikita A. Sakhanenko, David J. Galas:
Probabilistic Logic Methods and Some Applications to Biology and Medicine. J. Comput. Biol. 19(3): 316-336 (2012) - 2011
- [j8]Ji-Hoon Cho, Kai Wang, David J. Galas:
An integrative approach to inferring biologically meaningful gene modules. BMC Syst. Biol. 5: 117 (2011) - [j7]Nikita A. Sakhanenko, David J. Galas:
Complexity of networks I: The set-complexity of binary graphs. Complex. 17(2): 51-64 (2011) - 2010
- [j6]Nikita A. Sakhanenko, David J. Galas:
Markov Logic Networks in the Analysis of Genetic Data. J. Comput. Biol. 17(11): 1491-1508 (2010) - [j5]David J. Galas, Matti Nykter, Gregory W. Carter, Nathan D. Price, Ilya Shmulevich:
Biological information as set-based complexity. IEEE Trans. Inf. Theory 56(2): 667-677 (2010) - 2009
- [j4]Gregory W. Carter, David J. Galas, Timothy Galitski:
Maximal Extraction of Biological Information from Genetic Interaction Data. PLoS Comput. Biol. 5(4) (2009) - 2003
- [j3]Fan R. K. Chung, Linyuan Lu, T. Gregory Dewey, David J. Galas:
Duplication Models for Biological Networks. J. Comput. Biol. 10(5): 677-687 (2003) - 2002
- [j2]Ashish Bhan, David J. Galas, T. Gregory Dewey:
A duplication growth model of gene expression networks. Bioinform. 18(11): 1486-1493 (2002) - 1979
- [j1]Albert Schmitz, David J. Galas:
The interaction of RNA polymerase and lac repressor with the lac control region. Nucleic Acids Res. 6(1): 111-137 (1979)
Informal and Other Publications
- 2019
- [i6]David J. Galas:
The Group Theoretic Roots of Information I: permutations, symmetry, and entropy. CoRR abs/1908.09642 (2019) - 2017
- [i5]David J. Galas, T. Gregory Dewey, James Kunert-Graf, Nikita A. Sakhanenko:
Expansion of the Kullback-Leibler Divergence, and a new class of information metrics. CoRR abs/1702.00033 (2017) - 2016
- [i4]David J. Galas, Nikita A. Sakhanenko:
Unifying formalism for multivariate information-related measures: Möbius operators on subset lattices. CoRR abs/1601.06780 (2016) - 2013
- [i3]David J. Galas, Nikita A. Sakhanenko, Alexander Skupin, Tomasz M. Ignac:
Describing the complexity of systems: Multi-variable "set complexity" and hypergraphs. CoRR abs/1302.6932 (2013) - [i2]David J. Galas, Nikita A. Sakhanenko, Benjamin Keller:
On Lattices and the Dualities of Information Measures. CoRR abs/1308.0047 (2013) - 2008
- [i1]David J. Galas, Matti Nykter, Gregory W. Carter, Nathan D. Price, Ilya Shmulevich:
Set-based complexity and biological information. CoRR abs/0801.4024 (2008)
Coauthor Index
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