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2020 – today
- 2024
[j21]Jorge Novoa, Javier López-Ibáñez, Monica Chagoyen
, Juan Antonio Garcia-Ranea, Florencio Pazos:
CoMentG: comprehensive retrieval of generic relationships between biomedical concepts from the scientific literature. Database J. Biol. Databases Curation 2024 (2024)- 2023
- [j20]Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen:
MBROLE3: improved functional enrichment of chemical compounds for metabolomics data analysis. Nucleic Acids Res. 51(W1): 305-309 (2023) - 2021
- [j19]Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen:
Predicting biological pathways of chemical compounds with a profile-inspired approach. BMC Bioinform. 22(1): 320 (2021)
2010 – 2019
- 2019
- [j18]Florencio Pazos, Monica Chagoyen:
Characteristics and evolution of the ecosystem of software tools supporting research in molecular biology. Briefings Bioinform. 20(4): 1329-1336 (2019) - [j17]Javier López-Ibáñez, Laura T. Martín, Monica Chagoyen, Florencio Pazos:
Bacterial Feature Finder (BaFF) - a system for extracting features overrepresented in sets of prokaryotic organisms. Bioinform. 35(18): 3482-3483 (2019) - [j16]Monica Chagoyen, Juan F. Poyatos:
Complex genetic and epigenetic regulation deviates gene expression from a unifying global transcriptional program. PLoS Comput. Biol. 15(9) (2019) - 2017
- [j15]Sara González-Pérez, Florencio Pazos, Monica Chagoyen:
Factors affecting interactome-based prediction of human genes associated with clinical signs. BMC Bioinform. 18(1): 340 (2017) - 2016
- [j14]Monica Chagoyen, Juan A. García-Martín, Florencio Pazos:
Practical analysis of specificity-determining residues in protein families. Briefings Bioinform. 17(2): 255-261 (2016) - [j13]Monica Chagoyen, Florencio Pazos:
Characterization of clinical signs in the human interactome. Bioinform. 32(12): 1761-1765 (2016) - [j12]Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen:
MBROLE 2.0 - functional enrichment of chemical compounds. Nucleic Acids Res. 44(Webserver-Issue): W201-W204 (2016) - 2013
- [j11]Monica Chagoyen, Florencio Pazos:
Tools for the functional interpretation of metabolomic experiments. Briefings Bioinform. 14(6): 737-744 (2013) - 2011
- [j10]Monica Chagoyen, Florencio Pazos:
MBRole: enrichment analysis of metabolomic data. Bioinform. 27(5): 730-731 (2011) - 2010
- [j9]Monica Chagoyen, Florencio Pazos:
Quantifying the biological significance of gene ontology biological processes - implications for the analysis of systems-wide data. Bioinform. 26(3): 378-384 (2010)
2000 – 2009
- 2009
- [j8]Miguel Vázquez, Pedro Carmona-Saez, Rubén Nogales-Cadenas, Monica Chagoyen, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano:
SENT: semantic features in text. Nucleic Acids Res. 37(Web-Server-Issue): 153-159 (2009) - 2008
- [j7]Monica Chagoyen, José María Carazo, Alberto D. Pascual-Montano:
Assessment of protein set coherence using functional annotations. BMC Bioinform. 9 (2008) - [c3]Mariana L. Neves, Monica Chagoyen, José María Carazo, Alberto D. Pascual-Montano:
CBR-Tagger: a case-based reasoning approach to the gene/protein mention problem. BioNLP 2008: 108-109 - [c2]Miguel Vázquez, Monica Chagoyen, Alberto D. Pascual-Montano:
Named Entity Recognition and Normalization: A Domain-Specific Language Approach. IWPACBB 2008: 147-155 - 2006
- [j6]Monica Chagoyen, Pedro Carmona-Saez, Hagit Shatkay, José María Carazo, Alberto D. Pascual-Montano:
Discovering semantic features in the literature: a foundation for building functional associations. BMC Bioinform. 7: 41 (2006) - [j5]Pedro Carmona-Saez, Monica Chagoyen, Andrés Rodríguez Moreno, Oswaldo Trelles, José María Carazo, Alberto D. Pascual-Montano:
Integrated analysis of gene expression by association rules discovery. BMC Bioinform. 7: 54 (2006) - [j4]Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, José María Carazo, Alberto D. Pascual-Montano:
A literature-based similarity metric for biological processes. BMC Bioinform. 7: 363 (2006) - [j3]Alberto D. Pascual-Montano, Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, José María Carazo, Roberto D. Pascual-Marqui:
bioNMF: a versatile tool for non-negative matrix factorization in biology. BMC Bioinform. 7: 366 (2006) - 2004
- [j2]Monica Chagoyen, M. Erdem Kurul, Pedro A. de Alarcón, José María Carazo, Amarnath Gupta:
Designing and executing scientific workflows with a programmable integrator. Bioinform. 20(13): 2092-2100 (2004) - 2003
- [c1]Monica Chagoyen, M. Erdem Kurul, Pedro A. de Alarcón, Simone Santini, Bertram Ludäscher, José María Carazo, Amarnath Gupta:
A Semantic Mediation Approach for Problems in Computational Molecular Biology. CSB 2003: 386-387
1990 – 1999
- 1999
- [j1]José María Carazo, Ernst H. K. Stelzer, A. Engel, I. Fita, C. Henn, J. Machtynger, P. McNeil, David M. Shotton, Monica Chagoyen, Pedro A. de Alarcón, R. Fritsch, J. B. Heymann, Susana G. Kalko, J. J. Pittet, Patricia Rodriguez-Tomé, Thomas Boudier:
Organising multi-dimensional biological image information: the BioImage Database. Nucleic Acids Res. 27(1): 280-283 (1999)
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