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Michal Otyepka
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2020 – today
- 2024
- [j13]Petra Kührová
, Vojtech Mlýnský
, Michal Otyepka
, Jirí Sponer
, Pavel Banás
:
Correction to "Sensitivity of the RNA Structure to Ion Conditions as Probed by Molecular Dynamics Simulations of Common Canonical RNA Duplexes". J. Chem. Inf. Model. 64(13): 5356 (2024) - 2023
- [j12]Petra Kührová
, Vojtech Mlýnský
, Michal Otyepka
, Jirí Sponer
, Pavel Banás
:
Sensitivity of the RNA Structure to Ion Conditions as Probed by Molecular Dynamics Simulations of Common Canonical RNA Duplexes. J. Chem. Inf. Model. 63(7): 2133-2146 (2023)
2010 – 2019
- 2018
- [j11]Lukás Pravda
, David Sehnal, Radka Svobodová Vareková
, Veronika Navrátilová, Dominik Tousek, Karel Berka
, Michal Otyepka
, Jaroslav Koca
:
ChannelsDB: database of biomacromolecular tunnels and pores. Nucleic Acids Res. 46(Database-Issue): D399-D405 (2018) - [j10]Lukás Pravda
, David Sehnal, Dominik Tousek, Veronika Navrátilová, Václav Bazgier, Karel Berka
, Radka Svobodová Vareková
, Jaroslav Koca, Michal Otyepka
:
MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update). Nucleic Acids Res. 46(Webserver-Issue): W368-W373 (2018) - 2017
- [j9]Marie Zgarbová
, Petr Jurecka
, Filip Lankas, Thomas E. Cheatham III
, Jirí Sponer
, Michal Otyepka
:
Influence of BII Backbone Substates on DNA Twist: A Unified View and Comparison of Simulation and Experiment for All 136 Distinct Tetranucleotide Sequences. J. Chem. Inf. Model. 57(2): 275-287 (2017) - 2016
- [j8]Václav Bazgier, Karel Berka
, Michal Otyepka
, Pavel Banás:
Exponential repulsion improves structural predictability of molecular docking. J. Comput. Chem. 37(28): 2485-2494 (2016) - 2015
- [j7]Veronika Navrátilová, Markéta Paloncýová
, Michaela Kajsová, Karel Berka
, Michal Otyepka
:
Effect of Cholesterol on the Structure of Membrane-Attached Cytochrome P450 3A4. J. Chem. Inf. Model. 55(3): 628-635 (2015) - 2014
- [j6]Lukás Pravda
, Karel Berka
, Radka Svobodová Vareková
, David Sehnal
, Pavel Banás, Roman A. Laskowski
, Jaroslav Koca
, Michal Otyepka
:
Anatomy of enzyme channels. BMC Bioinform. 15: 379 (2014) - 2013
- [j5]David Sehnal, Radka Svobodová Vareková, Karel Berka, Lukás Pravda, Veronika Navrátilová, Pavel Banás, Crina-Maria Ionescu, Michal Otyepka, Jaroslav Koca:
MOLE 2.0: advanced approach for analysis of biomacromolecular channels. J. Cheminformatics 5: 39 (2013) - 2012
- [j4]Karel Berka
, Ondrej Hanák, David Sehnal
, Pavel Banás, Veronika Navrátilová, Deepti Jaiswal Kundu
, Crina-Maria Ionescu, Radka Svobodová Vareková
, Jaroslav Koca
, Michal Otyepka
:
MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels. Nucleic Acids Res. 40(Web-Server-Issue): 222-227 (2012) - 2011
- [j3]Petr Dobes, Jindrich Fanfrlík
, Jan Rezác
, Michal Otyepka
, Pavel Hobza
:
Transferable scoring function based on semiempirical quantum mechanical PM6-DH2 method: CDK2 with 15 structurally diverse inhibitors. J. Comput. Aided Mol. Des. 25(3): 223-235 (2011)
2000 – 2009
- 2006
- [j2]Martin Petrek, Michal Otyepka
, Pavel Banás, Pavlína Kosinová, Jaroslav Koca
, Jirí Damborský
:
CAVER: a new tool to explore routes from protein clefts, pockets and cavities. BMC Bioinform. 7: 316 (2006) - [j1]Pavel Banás, Michal Otyepka
, Petr Jerábek
, Martin Petrek, Jirí Damborský
:
Mechanism of enhanced conversion of 1, 2, 3-trichloropropane by mutant haloalkane dehalogenase revealed by molecular modeling. J. Comput. Aided Mol. Des. 20(6): 375-383 (2006)
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last updated on 2024-09-10 02:08 CEST by the dblp team
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