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ORCIDChristian M. Reidys
Person information
- affiliation: Virginia Tech, Biocomplexity Institute, USA
- affiliation (former): University of Southern Denmark
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Books and Theses
- 2011
[b2]Christian M. Reidys:
Combinatorial Computational Biology of RNA - Pseudoknots and Neutral Networks. Springer 2011, ISBN 978-0-387-76730-7, pp. I-IX, 1-257- 2008
- [b1]Henning S. Mortveit
, Christian M. Reidys:
An Introduction to Sequential Dynamical Systems. Universitext, Springer 2008, ISBN 978-0-387-30654-4, pp. I-XII, 1-248
Journal Articles
- 2022
- [j63]Pavel A. Pevzner, Martin Vingron, Christian M. Reidys, Fengzhu Sun, Sorin Istrail:
Michael Waterman's Contributions to Computational Biology and Bioinformatics. J. Comput. Biol. 29(7): 601-615 (2022) - 2021
- [j62]Fenix W. D. Huang, Christopher L. Barrett, Christian M. Reidys:
The energy-spectrum of bicompatible sequences. Algorithms Mol. Biol. 16(1): 7 (2021) - [j61]Andrei C. Bura, Qijun He, Christian M. Reidys:
Loop homology of bi-secondary structures. Discret. Math. 344(6): 112371 (2021) - [j60]Christopher L. Barrett, Andrei C. Bura, Qijun He, Fenix W. D. Huang, Thomas J. X. Li, Michael S. Waterman, Christian M. Reidys:
Multiscale Feedback Loops in SARS-CoV-2 Viral Evolution. J. Comput. Biol. 28(3): 248-256 (2021) - 2020
- [j59]Thomas J. X. Li, Christian M. Reidys:
On an enhancement of RNA probing data using information theory. Algorithms Mol. Biol. 15(1): 15 (2020) - 2019
- [j58]Christopher L. Barrett, Qijun He, Fenix W. D. Huang, Christian M. Reidys:
A Boltzmann Sampler for 1-Pairs with Double Filtration. J. Comput. Biol. 26(3): 173-192 (2019) - [j57]Ricky X. F. Chen, Andrei C. Bura, Christian M. Reidys:
D-Chain Tomography of Networks: A New Structure Spectrum and an Application to the SIR Process. SIAM J. Appl. Dyn. Syst. 18(4): 2181-2201 (2019) - 2018
- [j56]Reza Rezazadegan, Christian M. Reidys:
Degeneracy and genetic assimilation in RNA evolution. BMC Bioinform. 19(1): 543:1-543:17 (2018) - [j55]Christopher L. Barrett, Qijun He, Fenix W. D. Huang, Christian M. Reidys:
An Efficient Dual Sampling Algorithm with Hamming Distance Filtration. J. Comput. Biol. 25(11): 1179-1192 (2018) - 2017
- [j54]Christopher L. Barrett, Fenix W. D. Huang, Christian M. Reidys:
Sequence-structure relations of biopolymers. Bioinform. 33(3): 382-389 (2017) - [j53]Fenix W. D. Huang, Christian M. Reidys:
A topological framework for signed permutations. Discret. Math. 340(9): 2161-2182 (2017) - [j52]Ricky X. F. Chen, Christian M. Reidys:
A Combinatorial Identity Concerning Plane Colored Trees and its Applications. J. Integer Seq. 20(3): 17.3.7 (2017) - 2016
- [j51]Christopher L. Barrett, Thomas J. X. Li, Christian M. Reidys:
RNA Secondary Structures Having a Compatible Sequence of Certain Nucleotide Ratios. J. Comput. Biol. 23(11): 857-873 (2016) - [j50]Ricky X. F. Chen, Christian M. Reidys:
Plane Permutations and Applications to a Result of Zagier-Stanley and Distances of Permutations. SIAM J. Discret. Math. 30(3): 1660-1684 (2016) - 2014
- [j49]Christian M. Reidys, Emma Yu Jin:
The evolution of the random reversal graph. Appl. Math. Comput. 227: 347-358 (2014) - [j48]Hillary S. W. Han, Thomas J. X. Li, Christian M. Reidys:
Combinatorics of γ-Structures. J. Comput. Biol. 21(8): 591-608 (2014) - [j47]Benjamin M. M. Fu, Christian M. Reidys:
Shapes of Interacting RNA Complexes. J. Comput. Biol. 21(9): 649-664 (2014) - 2013
- [j46]Jing Qin, Christian M. Reidys:
On Topological RNA Interaction Structures. J. Comput. Biol. 20(7): 495-513 (2013) - 2012
- [j45]Fenix W. D. Huang, Christian M. Reidys:
On the combinatorics of sparsification. Algorithms Mol. Biol. 7: 28 (2012) - [j44]Christian M. Reidys, Fenix W. D. Huang, Jørgen E. Andersen, Robert C. Penner, Peter F. Stadler, Markus E. Nebel:
Addendum: topology and prediction of RNA pseudoknots. Bioinform. 28(2): 300 (2012) - [j43]Ivo L. Hofacker, Christian M. Reidys, Peter F. Stadler:
Symmetric circular matchings and RNA folding. Discret. Math. 312(1): 100-112 (2012) - [j42]Hillary S. W. Han, Christian M. Reidys:
The 5′-3′ Distance of RNA Secondary Structures. J. Comput. Biol. 19(7): 867-878 (2012) - [j41]Jørgen E. Andersen, Fenix W. D. Huang, Robert C. Penner, Christian M. Reidys:
Topology of RNA-RNA Interaction Structures. J. Comput. Biol. 19(7): 928-943 (2012) - [j40]Hillary S. W. Han, Christian M. Reidys:
A Phase Transition in Energy-Filtered RNA Secondary Structures. J. Comput. Biol. 19(10): 1105-1119 (2012) - 2011
- [j39]Andrew X. Li, Manja Marz, Jing Qin, Christian M. Reidys:
RNA-RNA interaction prediction based on multiple sequence alignments. Bioinform. 27(4): 456-463 (2011) - [j38]Christian M. Reidys, Fenix W. D. Huang, Jørgen E. Andersen, Robert C. Penner, Peter F. Stadler, Markus E. Nebel:
Topology and prediction of RNA pseudoknots. Bioinform. 27(8): 1076-1085 (2011) - [j37]Emma Yu Jin, Christian M. Reidys:
Random induced subgraphs of Cayley graphs induced by transpositions. Discret. Math. 311(21): 2496-2511 (2011) - [j36]Markus E. Nebel, Christian M. Reidys, Rita R. Wang:
Loops in Canonical RNA Pseudoknot Structures. J. Comput. Biol. 18(12): 1793-1806 (2011) - 2010
- [j35]Emma Yu Jin, Christian M. Reidys:
On the decomposition of k-noncrossing RNA structures. Adv. Appl. Math. 44(1): 53-70 (2010) - [j34]James Z. M. Gao, Linda Y. M. Li, Christian M. Reidys:
Inverse folding of RNA pseudoknot structures. Algorithms Mol. Biol. 5: 27 (2010) - [j33]Fenix W. D. Huang, Jing Qin, Christian M. Reidys, Peter F. Stadler:
Target prediction and a statistical sampling algorithm for RNA-RNA interaction. Bioinform. 26(2): 175-181 (2010) - [j32]Fenix W. D. Huang, Christian M. Reidys:
On the Uniform Generation of Modular Diagrams. Electron. J. Comb. 17(1) (2010) - [j31]Christian M. Reidys, Rita R. Wang, Albus Y. Y. Zhao:
Modular, k-Noncrossing Diagrams. Electron. J. Comb. 17(1) (2010) - [j30]Emma Yu Jin, Christian M. Reidys:
RNA pseudoknot structures with arc-length >=3 and stack-length >=sigma. Discret. Appl. Math. 158(1): 25-36 (2010) - [j29]Christian M. Reidys, Rita R. Wang:
Shapes of RNA Pseudoknot Structures. J. Comput. Biol. 17(11): 1575-1590 (2010) - 2009
- [j28]Emma Yu Jin, Christian M. Reidys:
Combinatorial design of pseudoknot RNA. Adv. Appl. Math. 42(2): 135-151 (2009) - [j27]Fenix W. D. Huang, Jing Qin, Christian M. Reidys, Peter F. Stadler:
Partition function and base pairing probabilities for RNA-RNA interaction prediction. Bioinform. 25(20): 2646-2654 (2009) - [j26]Fenix W. D. Huang, Linda Y. M. Li, Christian M. Reidys:
Sequence-structure relations of pseudoknot RNA. BMC Bioinform. 10(S-1) (2009) - [j25]William Y. C. Chen, Jing Qin, Christian M. Reidys, Doron Zeilberger:
Efficient Counting and Asymptotics of k-Noncrossing Tangled Diagrams. Electron. J. Comb. 16(1) (2009) - [j24]Christian M. Reidys:
Large components in random induced subgraphs of n-cubes. Discret. Math. 309(10): 3113-3124 (2009) - [j23]Fenix W. D. Huang, Wade W. J. Peng, Christian M. Reidys:
Folding 3-Noncrossing RNA Pseudoknot Structures. J. Comput. Biol. 16(11): 1549-1575 (2009) - 2008
- [j22]William Y. C. Chen, Jing Qin, Christian M. Reidys:
Crossings and Nestings in Tangled Diagrams. Electron. J. Comb. 15(1) (2008) - [j21]Christian M. Reidys:
Combinatorics of sequential dynamical systems. Discret. Math. 308(4): 514-528 (2008) - [j20]Hillary S. W. Han, Christian M. Reidys:
Pseudoknot RNA Structures with Arc-Length >= 4. J. Comput. Biol. 15(9): 1195-1208 (2008) - [j19]Gang Ma, Christian M. Reidys:
Canonical RNA Pseudoknot Structures. J. Comput. Biol. 15(10): 1257-1273 (2008) - 2007
- [j18]Stephan J. Eidenbenz, Anders A. Hansson, Venkatesh Ramaswamy, Christian M. Reidys:
On a New Class of Load Balancing Network Protocols. Adv. Complex Syst. 10(3): 359-377 (2007) - 2005
- [j17]Anders Å. Hansson, Henning S. Mortveit, Christian M. Reidys:
On Asynchronous Cellular Automata. Adv. Complex Syst. 8(4): 521-538 (2005) - [j16]Christian M. Reidys:
On certain morphisms of sequential dynamical systems. Discret. Math. 296(2-3): 245-257 (2005) - 2004
- [j15]Henning S. Mortveit, Christian M. Reidys:
Reduction of Discrete Dynamical Systems over Graphs. Adv. Complex Syst. 7(1): 1-20 (2004) - [j14]Henning S. Mortveit, Christian M. Reidys:
Neutral Evolution and Mutation Rates of Sequential Dynamical Systems. Adv. Complex Syst. 7(3-4): 395-418 (2004) - 2003
- [j13]Christopher L. Barrett, Henning S. Mortveit, Christian M. Reidys:
ETS IV: Sequential dynamical systems: fixed points, invertibility and equivalence. Appl. Math. Comput. 134(1): 153-171 (2003) - 2002
- [j12]Christopher L. Barrett, Henning S. Mortveit, Christian M. Reidys:
Sequential dynamical systems. Artif. Life Robotics 6(4): 167-169 (2002) - [j11]Christian M. Reidys:
Distances In Random Induced Subgraphs Of Generalized N-Cubes. Comb. Probab. Comput. 11(6): 599-605 (2002) - [j10]Christian M. Reidys, Peter F. Stadler:
Combinatorial Landscapes. SIAM Rev. 44(1): 3-54 (2002) - 2001
- [j9]Christian M. Reidys:
On Acyclic Orientations and Sequential Dynamical Systems. Adv. Appl. Math. 27(4): 790-804 (2001) - [j8]Christian M. Reidys, Peter F. Stadler:
Neutrality in fitness landscapes. Appl. Math. Comput. 117(2-3): 321-350 (2001) - [j7]Christopher L. Barrett, Henning S. Mortveit, Christian M. Reidys:
Elements of a theory of simulation III: equivalence of SDS. Appl. Math. Comput. 122(3): 325-340 (2001) - [j6]Henning S. Mortveit, Christian M. Reidys:
Discrete, sequential dynamical systems. Discret. Math. 226(1-3): 281-295 (2001) - 2000
- [j5]Christopher L. Barrett, Henning S. Mortveit, Christian M. Reidys:
Elements of a theory of simulation II: sequential dynamical systems. Appl. Math. Comput. 107(2-3): 121-136 (2000) - [j4]Christian M. Reidys:
Random Subgraphs of Cayley Graphs over p-Groups. Eur. J. Comb. 21(8): 1057-1066 (2000) - 1999
- [j3]Stephan Kopp, Christian M. Reidys:
Neutral networks: a combinatorial perspective. Adv. Complex Syst. 2(3): 283-312 (1999) - [j2]Christopher L. Barrett, Christian M. Reidys:
Elements of a theory of computer simulation I: Sequential CA over random graphs. Appl. Math. Comput. 98(2-3): 241-259 (1999) - 1996
- [j1]Christian M. Reidys, Peter F. Stadler:
Bio-molecular Shapes and Algebraic Structures. Comput. Chem. 20(1): 85-94 (1996)
Conference and Workshop Papers
- 2015
- [c4]Christopher L. Barrett, Fenix W. D. Huang, Christian M. Reidys:
Evidence of higher order patterns in information transmission between nucleotide sequences and folded molecular shapes of RNA. BICT 2015: 181-184 - 2000
- [c3]Christopher L. Barrett, B. W. Bush, Stephan Kopp, Henning S. Mortveit, Christian M. Reidys:
Sequential Dynamical Systems and Applications to Simulations. Annual Simulation Symposium 2000: 245-252 - 1996
- [c2]Christian V. Forst, Christian M. Reidys:
Neutral Evolutionary Dynamics. German Conference on Bioinformatics 1996: 197-200 - 1995
- [c1]Christian V. Forst, Christian M. Reidys, Jacqueline Weber:
Evolutionary Dynamics and Optimization: Neutral Networks as Model-Landscapes for RNA Secondary-Structure Folding-Landscapes. ECAL 1995: 128-147
Parts in Books or Collections
- 2006
- [p1]Christian M. Reidys:
Combinatorics of Genotype-Phenotype Maps: An RNA Case Study. Computational Complexity and Statistical Physics 2006: 271-284
Informal and Other Publications
- 2024
- [i7]Christopher L. Barrett, Andrei C. Bura, Fenix W. D. Huang, Christian M. Reidys:
The site linkage spectrum of data arrays. CoRR abs/2401.04827 (2024) - 2022
- [i6]Andrei C. Bura, Neelav S. Dutta, Thomas J. X. Li, Christian M. Reidys:
A computational framework for weighted simplicial homology. CoRR abs/2206.04612 (2022) - 2019
- [i5]Thomas J. X. Li, Christian M. Reidys:
On an enhancement of RNA probing data using Information Theory. CoRR abs/1909.05744 (2019) - 2018
- [i4]Ricky X. F. Chen, Christian M. Reidys, Andrei C. Bura:
Network tomography: a new structure spectrum for studying network dynamics. CoRR abs/1810.07004 (2018) - 2016
- [i3]Fenix W. D. Huang, Christian M. Reidys:
Topological language for RNA. CoRR abs/1605.02628 (2016) - 2015
- [i2]Ricky X. F. Chen, Christian M. Reidys:
A simple framework on sorting permutations. CoRR abs/1502.07971 (2015) - 2013
- [i1]Fenix W. D. Huang, Markus E. Nebel, Christian M. Reidys:
Uniform generation of RNA pseudoknot structures with genus filtration. CoRR abs/1304.7397 (2013)
Coauthor Index
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