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Chad L. Myers
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Journal Articles
- 2021
- [j21]Hamid Safizadeh
, Scott W. Simpkins, Justin Nelson, Sheena C. Li, Jeff S. Piotrowski, Mami Yoshimura, Yoko Yashiroda, Hiroyuki Hirano, Hiroyuki Osada
, Minoru Yoshida, Charles Boone, Chad L. Myers:
Improving Measures of Chemical Structural Similarity Using Machine Learning on Chemical-Genetic Interactions. J. Chem. Inf. Model. 61(9): 4156-4172 (2021) - 2018
- [j20]Justin Nelson, Scott W. Simpkins, Hamid Safizadeh, Sheena C. Li
, Jeff S. Piotrowski, Hiroyuki Hirano
, Yoko Yashiroda, Hiroyuki Osada, Minoru Yoshida
, Charles Boone, Chad L. Myers:
MOSAIC: a chemical-genetic interaction data repository and web resource for exploring chemical modes of action. Bioinform. 34(7): 1251-1252 (2018) - [j19]Scott W. Simpkins
, Justin Nelson, Raamesh Deshpande, Sheena C. Li, Jeff S. Piotrowski, Erin H. Wilson
, Abraham A. Gebre, Hamid Safizadeh, Reika Okamoto, Mami Yoshimura, Michael Costanzo, Yoko Yashiroda, Yoshikazu Ohya
, Hiroyuki Osada, Minoru Yoshida
, Charles Boone, Chad L. Myers:
Predicting bioprocess targets of chemical compounds through integration of chemical-genetic and genetic interactions. PLoS Comput. Biol. 14(10) (2018) - 2013
- [j18]Omar Wagih
, Matej Usaj
, Anastasia Baryshnikova, Benjamin VanderSluis, Elena Kuzmin, Michael Costanzo, Chad L. Myers, Brenda J. Andrews, Charles Boone, Leopold Parts
:
SGAtools: one-stop analysis and visualization of array-based genetic interaction screens. Nucleic Acids Res. 41(Webserver-Issue): 591-596 (2013) - [j17]Recep Colak, TaeHyung Kim, Magali Michaut
, Mark G. F. Sun, Manuel Irimia
, Jeremy Bellay, Chad L. Myers, Benjamin J. Blencowe, Philip M. Kim:
Distinct Types of Disorder in the Human Proteome: Functional Implications for Alternative Splicing. PLoS Comput. Biol. 9(4) (2013) - 2011
- [j16]Magali Michaut
, Anastasia Baryshnikova, Michael Costanzo, Chad L. Myers, Brenda J. Andrews, Charles Boone, Gary D. Bader
:
Protein Complexes are Central in the Yeast Genetic Landscape. PLoS Comput. Biol. 7(2) (2011) - 2010
- [j15]Judice L. Y. Koh, Huiming Ding, Michael Costanzo, Anastasia Baryshnikova, Kiana Toufighi, Gary D. Bader
, Chad L. Myers, Brenda J. Andrews, Charles Boone:
DRYGIN: a database of quantitative genetic interaction networks in yeast. Nucleic Acids Res. 38(Database-Issue): 502-507 (2010) - [j14]Gaurav Pandey, Bin Zhang, Aaron N. Chang, Chad L. Myers, Jun Zhu, Vipin Kumar, Eric E. Schadt:
An Integrative Multi-Network and Multi-Classifier Approach to Predict Genetic Interactions. PLoS Comput. Biol. 6(9) (2010) - [j13]Raamesh Deshpande, Shikha Sharma, Catherine M. Verfaillie
, Wei-Shou Hu, Chad L. Myers:
A Scalable Approach for Discovering Conserved Active Subnetworks across Species. PLoS Comput. Biol. 6(12) (2010) - 2009
- [j12]Curtis Huttenhower
, Matthew A. Hibbs, Chad L. Myers, Amy A. Caudy
, David C. Hess, Olga G. Troyanskaya
:
The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction. Bioinform. 25(18): 2404-2410 (2009) - [j11]Gaurav Pandey, Chad L. Myers, Vipin Kumar:
Incorporating functional inter-relationships into protein function prediction algorithms. BMC Bioinform. 10 (2009) - [j10]Matthew A. Hibbs, Chad L. Myers, Curtis Huttenhower
, David C. Hess, Kai Li, Amy A. Caudy
, Olga G. Troyanskaya
:
Directing Experimental Biology: A Case Study in Mitochondrial Biogenesis. PLoS Comput. Biol. 5(3) (2009) - 2008
- [j9]Yuanfang Guan
, Chad L. Myers, Rong Lu
, Ihor Lemischka, Carol J. Bult, Olga G. Troyanskaya
:
A Genomewide Functional Network for the Laboratory Mouse. PLoS Comput. Biol. 4(9) (2008) - 2007
- [j8]Chad L. Myers, Olga G. Troyanskaya
:
Context-sensitive data integration and prediction of biological networks. Bioinform. 23(17): 2322-2330 (2007) - [j7]Matthew A. Hibbs, David C. Hess, Chad L. Myers, Curtis Huttenhower
, Kai Li, Olga G. Troyanskaya
:
Exploring the functional landscape of gene expression: directed search of large microarray compendia. Bioinform. 23(20): 2692-2699 (2007) - [j6]Curtis Huttenhower
, Avi I. Flamholz
, Jessica N. Landis, Sauhard Sahi, Chad L. Myers, Kellen L. Olszewski, Matthew A. Hibbs, Nathan O. Siemers, Olga G. Troyanskaya
, Hilary A. Coller:
Nearest Neighbor Networks: clustering expression data based on gene neighborhoods. BMC Bioinform. 8 (2007) - 2006
- [j5]Curtis Huttenhower
, Matthew A. Hibbs, Chad L. Myers, Olga G. Troyanskaya
:
A scalable method for integration and functional analysis of multiple microarray datasets. Bioinform. 22(23): 2890-2897 (2006) - [j4]Rachel S. G. Sealfon, Matthew A. Hibbs, Curtis Huttenhower, Chad L. Myers, Olga G. Troyanskaya
:
GOLEM: an interactive graph-based gene-ontology navigation and analysis tool. BMC Bioinform. 7: 443 (2006) - 2005
- [j3]Chad L. Myers, Xing Chen, Olga G. Troyanskaya
:
Visualization-based discovery and analysis of genomic aberrations in microarray data. BMC Bioinform. 6: 146 (2005) - [j2]Sun-Yuan Kung, Chad L. Myers, Xinying Zhang:
A recursive QR approach to adaptive equalization of time-varying MIMO channels. Commun. Inf. Syst. 5(2): 169-196 (2005) - 2004
- [j1]Chad L. Myers, Maitreya J. Dunham
, Sun-Yuan Kung, Olga G. Troyanskaya
:
Accurate detection of aneuploidies in array CGH and gene expression microarray data. Bioinform. 20(18): 3533-3543 (2004)
Conference and Workshop Papers
- 2010
- [c5]Gang Fang, Rui Kuang, Gaurav Pandey, Michael S. Steinbach, Chad L. Myers, Vipin Kumar:
Subspace Differential Coexpression Analysis: Problem Definition and a General Approach. Pacific Symposium on Biocomputing 2010: 145-156 - 2009
- [c4]Jeremy Bellay, Benjamin VanderSluis, Yungil Kim, Sunayan Bandyopadhyay, Chad L. Myers:
Characterization of systems-level organization through mining large-scale genetic interaction networks. GENSiPS 2009: 1-4 - [c3]Gaurav Pandey, Gowtham Atluri, Michael S. Steinbach
, Chad L. Myers, Vipin Kumar:
An association analysis approach to biclustering. KDD 2009: 677-686 - 2004
- [c2]Sun-Yuan Kung, Chad L. Myers, Xinying Zhang:
A recursive QR approach to semi-blind equalization of time-varying MIMO channels. ICASSP (4) 2004: 437-440 - [c1]Xinying Zhang, Chad L. Myers, Sun-Yuan Kung:
Cross-weighted Fisher discriminant analysis for visualization of DNA microarray data. ICASSP (5) 2004: 589-592
Informal and Other Publications
- 2014
- [i1]Chandrima Sarkar, Raamesh Deshpande, Chad L. Myers:
Analysis of Barcode sequence features to find anomalies due to amplification Bias. CoRR abs/1402.6775 (2014)
Coauthor Index
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