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ORCIDIoannis P. Androulakis
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Journal Articles
- 2023
[j26]Florentina Nicolau, Hugues Mounier, Ioannis P. Androulakis:
HPA axis differential flatness and Liouvillian study for higher resiliency investigations. IMA J. Math. Control. Inf. 40(4): 746-788 (2023)- 2019
- [j25]Ioannis P. Androulakis:
The quest for digital health: From diseases to patients. Comput. Chem. Eng. 127: 247-253 (2019) - [j24]Panteleimon D. Mavroudis
, Jeremy D. Scheff, John C. Doyle, Yoram Vodovotz, Ioannis P. Androulakis:
The Impact of Stochasticity and Its Control on a Model of the Inflammatory Response. Comput. 7(1): 3 (2019) - 2017
- [j23]Rohit T. Rao, Megerle L. Scherholz, Clara Hartmanshenn, Seul-A. Bae, Ioannis P. Androulakis:
On the analysis of complex biological supply chains: From process systems engineering to quantitative systems pharmacology. Comput. Chem. Eng. 107: 100-110 (2017) - 2014
- [j22]Tung T. Nguyen, John S. A. Mattick, Qian Yang, Mehmet A. Orman, Marianthi G. Ierapetritou, Francois Berthiaume, Ioannis P. Androulakis:
Bioinformatics analysis of transcriptional regulation of circadian genes in rat liver. BMC Bioinform. 15: 83 (2014) - [j21]Andreas A. Linninger, Ioannis P. Androulakis:
Biosystems modeling and engineering. Comput. Chem. Eng. 71: 663-664 (2014) - [j20]Ioannis P. Androulakis:
A chemical engineer's perspective on health and disease. Comput. Chem. Eng. 71: 665-671 (2014) - 2013
- [j19]Jeremy D. Scheff, Panteleimon D. Mavroudis, Panagiota T. Foteinou, Gary An, Steve E. Calvano, John Doyle, Thomas E. Dick, Stephen F. Lowry, Yoram Vodovotz, Ioannis P. Androulakis:
A multiscale modeling approach to inflammation: A case study in human endotoxemia. J. Comput. Phys. 244: 279-289 (2013) - 2011
- [j18]Georges K. Saharidis, Ioannis P. Androulakis, Marianthi G. Ierapetritou:
Model building using bi-level optimization. J. Glob. Optim. 49(1): 49-67 (2011) - [j17]Jeremy D. Scheff, Alyssa K. Kosmides, Steve E. Calvano, Stephen F. Lowry, Ioannis P. Androulakis:
Pulsatile Glucocorticoid Secretion: Origins and Downstream Effects. IEEE Trans. Biomed. Eng. 58(12): 3504-3507 (2011) - 2010
- [j16]Tung T. Nguyen, Richard R. Almon, Debra C. DuBois, William J. Jusko, Ioannis P. Androulakis:
Importance of replication in analyzing time-series gene expression data: Corticosteroid dynamics and circadian patterns in rat liver. BMC Bioinform. 11: 279 (2010) - [j15]Tung T. Nguyen, Richard R. Almon, Debra C. DuBois, William J. Jusko, Ioannis P. Androulakis:
Comparative analysis of acute and chronic corticosteroid pharmacogenomic effects in rat liver: Transcriptional dynamics and regulatory structures. BMC Bioinform. 11: 515 (2010) - [j14]Meric A. Ovacik, Siddharth Sukumaran, Richard R. Almon, Debra C. DuBois, William J. Jusko, Ioannis P. Androulakis:
Circadian signatures in rat liver: from gene expression to pathways. BMC Bioinform. 11: 540 (2010) - 2009
- [j13]Tung T. Nguyen, Ioannis P. Androulakis:
Recent Advances in the Computational Discovery of Transcription Factor Binding Sites. Algorithms 2(1): 582-605 (2009) - [j12]Eric Yang, Ioannis P. Androulakis:
Assessing and selecting gene expression signals based upon the quality of the measured dynamics. BMC Bioinform. 10 (2009) - [j11]Panagiota T. Foteinou, Eric Yang, Ioannis P. Androulakis:
Networks, biology and systems engineering: A case study in inflammation. Comput. Chem. Eng. 33(12): 2028-2041 (2009) - [j10]Panagiota T. Foteinou, Eric Yang, Georges K. Saharidis, Marianthi G. Ierapetritou, Ioannis P. Androulakis:
A mixed-integer optimization framework for the synthesis and analysis of regulatory networks. J. Glob. Optim. 43(2-3): 263-276 (2009) - 2008
- [j9]Eric Yang, Timothy Maguire, Martin L. Yarmush, Ioannis P. Androulakis:
Informative gene selection and design of regulatory networks using integer optimization. Comput. Chem. Eng. 32(4-5): 633-649 (2008) - [j8]Kevin C. Furman, Ioannis P. Androulakis:
A novel MINLP-based representation of the original complex model for predicting gasoline emissions. Comput. Chem. Eng. 32(12): 2857-2876 (2008) - 2007
- [j7]Eric Yang, Panagiota T. Foteinou, K. R. King, Martin L. Yarmush, Ioannis P. Androulakis:
A novel non-overlapping bi-clustering algorithm for network generation using living cell array data. Bioinform. 23(17): 2306-2313 (2007) - [j6]Eric Yang, Timothy Maguire, Martin L. Yarmush, Francois Berthiaume, Ioannis P. Androulakis:
Bioinformatics analysis of the early inflammatory response in a rat thermal injury model. BMC Bioinform. 8 (2007) - 2006
- [j5]Ioannis P. Androulakis:
New approaches for representing, analyzing and visualizing complex kinetic transformations. Comput. Chem. Eng. 31(1): 41-50 (2006) - 2005
- [j4]Ioannis P. Androulakis:
Selecting maximally informative genes. Comput. Chem. Eng. 29(3): 535-546 (2005) - 2004
- [j3]Ioannis P. Androulakis:
"Store and retrieve" representations of dynamic systems motivated by studies in gas phase chemical kinetics. Comput. Chem. Eng. 28(11): 2141-2155 (2004) - 1997
- [j2]Ioannis P. Androulakis, Costas D. Maranas, Christodoulos A. Floudas:
Prediction of Oligopeptide Conformations via Deterministic Global Optimization. J. Glob. Optim. 11(1): 1-34 (1997) - 1995
- [j1]Ioannis P. Androulakis, Costas D. Maranas, Christodoulos A. Floudas:
αBB: A global optimization method for general constrained nonconvex problems. J. Glob. Optim. 7(4): 337-363 (1995)
Conference and Workshop Papers
- 2010
- [c5]Tung T. Nguyen, Panagiota T. Foteinou, Ioannis P. Androulakis, Steve E. Calvano, Stephen F. Lowry:
Dynamic Complexity of the Temporal Transcriptional Regulation Program in Human Endotoxemia. BIBE 2010: 112-117 - [c4]Vidya V. Iyer, Ioannis P. Androulakis, Charles M. Roth, Marianthi G. Ierapetritou:
Effects of Triadimefon on the Metabolism of Cultured Hepatocytes. BIBE 2010: 118-123 - [c3]Jeremy D. Scheff, Ioannis P. Androulakis, Steve E. Calvano, Stephen F. Lowry:
Modeling Circadian Rhythms in Inflammation. BIBE 2010: 197-202 - 2006
- [c2]Eric H. Yang, Ioannis P. Androulakis:
Assessing the Information Content of Short Time Series Expression Data. EMBC 2006: 5535-5538 - 1995
- [c1]Costas D. Maranas, Ioannis P. Androulakis, Christodoulos A. Floudas:
A deterministic global optimization approach for the protein folding problem. Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding 1995: 133-150
Reference Works
- 2009
- [r11]Ioannis P. Androulakis:
Asynchronous Distributed Optimization Algorithms. Encyclopedia of Optimization 2009: 123-128 - [r10]Ioannis P. Androulakis:
Dynamic Programming: Average Cost Per Stage Problems. Encyclopedia of Optimization 2009: 833-837 - [r9]Ioannis P. Androulakis:
Dynamic Programming: Discounted Problems. Encyclopedia of Optimization 2009: 846-850 - [r8]Ioannis P. Androulakis:
Dynamic Programming: Infinite Horizon Problems, Overview. Encyclopedia of Optimization 2009: 850-853 - [r7]Ioannis P. Androulakis:
Dynamic Programming: Inventory Control. Encyclopedia of Optimization 2009: 853-856 - [r6]Ioannis P. Androulakis:
Dynamic Programming: Stochastic Shortest Path Problems. Encyclopedia of Optimization 2009: 869-873 - [r5]Ioannis P. Androulakis:
Dynamic Programming: Undiscounted Problems. Encyclopedia of Optimization 2009: 873-876 - [r4]Ioannis P. Androulakis, Wanpracha Art Chaovalitwongse:
Mathematical Programming for Data Mining. Encyclopedia of Optimization 2009: 1955-1959 - [r3]Ioannis P. Androulakis:
MINLP: Branch and Bound Global Optimization Algorithm. Encyclopedia of Optimization 2009: 2132-2138 - [r2]Wanpracha Art Chaovalitwongse, Ioannis P. Androulakis, Panos M. Pardalos:
Quadratic Integer Programming: Complexity and Equivalent Forms. Encyclopedia of Optimization 2009: 3153-3159 - [r1]Ioannis P. Androulakis, Eric Yang:
Selection of Maximally Informative Genes. Encyclopedia of Optimization 2009: 3365-3374
Coauthor Index
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