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Journal Articles
- 2019
[j12]David Arndt
, Ana Marcu, Yongjie Liang, David S. Wishart:
PHAST, PHASTER and PHASTEST: Tools for finding prophage in bacterial genomes. Briefings Bioinform. 20(4): 1560-1567 (2019)- 2018
- [j11]David S. Wishart, Yannick Djoumbou Feunang, Ana Marcu, An Chi Guo, Kevin Y. H. Liang, Rosa Vázquez-Fresno, Tanvir Sajed, Daniel Johnson, Carin Li, Naama Karu, Zinat Sayeeda, Elvis J. Lo, Nazanin Assempour, Mark V. Berjanskii, Sandeep Singhal, David Arndt, Yongjie Liang, Hasan Badran, Jason R. Grant, Arnau Serra-Cayuela, Yifeng Liu, Rupa Mandal, Vanessa Neveu, Allison Pon, Craig Knox, Michael Wilson, Claudine Manach, Augustin Scalbert:
HMDB 4.0: the human metabolome database for 2018. Nucleic Acids Res. 46(Database-Issue): D608-D617 (2018) - 2016
- [j10]Sasha Babicki, David Arndt, Ana Marcu, Yongjie Liang, Jason R. Grant, Adam Maciejewski, David S. Wishart:
Heatmapper: web-enabled heat mapping for all. Nucleic Acids Res. 44(Webserver-Issue): W147-W153 (2016) - [j9]David Arndt, Jason R. Grant, Ana Marcu, Tanvir Sajed, Allison Pon, Yongjie Liang, David S. Wishart:
PHASTER: a better, faster version of the PHAST phage search tool. Nucleic Acids Res. 44(Webserver-Issue): W16-W21 (2016) - 2015
- [j8]David S. Wishart, David Arndt, Allison Pon, Tanvir Sajed, Anchi Guo, Yannick Djoumbou, Craig Knox, Michael Wilson, Yongjie Liang, Jason R. Grant, Yifeng Liu, Seyed Ali Goldansaz, Stephen M. Rappaport:
T3DB: the toxic exposome database. Nucleic Acids Res. 43(Database-Issue): 928-934 (2015) - [j7]Yifeng Liu, Yongjie Liang, David S. Wishart:
PolySearch2: a significantly improved text-mining system for discovering associations between human diseases, genes, drugs, metabolites, toxins and more. Nucleic Acids Res. 43(Webserver-Issue): W535-W542 (2015) - [j6]Allison Pon, Timothy Jewison, Yilu Su, Yongjie Liang, Craig Knox, Adam Maciejewski, Michael Wilson, David S. Wishart:
Pathways with PathWhiz. Nucleic Acids Res. 43(Webserver-Issue): W552-W559 (2015) - 2014
- [j5]Timothy Jewison, Yilu Su, Fatemeh Miri Disfany, Yongjie Liang, Craig Knox, Adam Maciejewski, Jenna Poelzer, Jessica Huynh, You Zhou, David Arndt, Yannick Djoumbou, Yifeng Liu, Lu Deng, Anchi Guo, Beomsoo Han, Allison Pon, Michael Wilson, Shahrzad Rafatnia, Philip Liu, David S. Wishart:
SMPDB 2.0: Big Improvements to the Small Molecule Pathway Database. Nucleic Acids Res. 42(Database-Issue): 478-484 (2014) - 2012
- [j4]Joseph A. Cruz, Yifeng Liu, Yongjie Liang, You Zhou, Michael Wilson, Jonathan J. Dennis, Paul Stothard, Gary H. Van Domselaar, David S. Wishart:
BacMap: an up-to-date electronic atlas of annotated bacterial genomes. Nucleic Acids Res. 40(Database-Issue): 599-604 (2012) - 2011
- [j3]You Zhou, Yongjie Liang, Karlene H. Lynch, Jonathan J. Dennis, David S. Wishart:
PHAST: A Fast Phage Search Tool. Nucleic Acids Res. 39(Web-Server-Issue): 347-352 (2011) - 2010
- [j2]Alex Frolkis, Craig Knox, Emilia Lim, Timothy Jewison, Vivian Law, David D. Hau, Philip Liu, Bijaya Gautam, Son Ly, Anchi Guo, Jianguo Xia, Yongjie Liang, Savita Shrivastava, David S. Wishart:
SMPDB: The Small Molecule Pathway Database. Nucleic Acids Res. 38(Database-Issue): 480-487 (2010) - [j1]Mark V. Berjanskii, Yongjie Liang, Jianjun Zhou, Peter Tang, Paul Stothard, You Zhou, Joseph A. Cruz, Cam Macdonell, Guohui Lin, Paul Lu, David S. Wishart:
PROSESS: a protein structure evaluation suite and server. Nucleic Acids Res. 38(Web-Server-Issue): 633-640 (2010)
Conference and Workshop Papers
- 2023
- [c1]Wenqi Huang, Lingyu Liang, Yongjie Liang, Zhen Dai, Jiaxuan Hou, Xuanang Li, Xin Wang, Xin Chen:
An Entity Alignment Method Based on Graph Attention Network with Pre-classification. WISA 2023: 297-308
Coauthor Index
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