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2020 – today
- 2024
- [j14]Anastasia Krithara, Anastasios Nentidis, Eirini Vandorou, Georgios Katsimpras, Yannis Almirantis, Magda Arnal, Adomas Bunevicius, Eulàlia Farré-Maduell, Maya Kassiss, Vasileios Konstantakos, Sherri Matis-Mitchell, Dimitris Polychronopoulos, Jesus Rodriguez-Pascual, Eleftherios Samaras, Martina Samiotaki, Despina Sanoudou, Aspasia Vozi, Georgios Paliouras:
BioASQ Synergy: a dialogue between question-answering systems and biomedical experts for promoting COVID-19 research. J. Am. Medical Informatics Assoc. 31(11): 2689-2698 (2024) - [c44]Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara, Georgios Paliouras:
Overview of BioASQ Tasks 12b and Synergy12 in CLEF2024. CLEF (Working Notes) 2024: 1-7 - [c43]Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara, Salvador Lima-López, Eulàlia Farré-Maduell, Martin Krallinger, Natalia V. Loukachevitch, Vera Davydova, Elena Tutubalina, Georgios Paliouras:
Overview of BioASQ 2024: The Twelfth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering. CLEF (2) 2024: 3-27 - [c42]Salvador Lima-López, Eulàlia Farré-Maduell, Jan Rodríguez-Miret, Miguel Rodríguez-Ortega, Livia Lilli, Jacopo Lenkowicz, Giovanna Ceroni, Jonathan Kossof, Anoop Shah, Anastasios Nentidis, Anastasia Krithara, Georgios Katsimpras, Georgios Paliouras, Martin Krallinger:
Overview of MultiCardioNER task at BioASQ 2024 on Medical Specialty and Language Adaptation of Clinical NER Systems for Spanish, English and Italian. CLEF (Working Notes) 2024: 8-27 - [c41]Anastasios Nentidis, Anastasia Krithara, Grigorios Tsoumakas, Georgios Paliouras:
Zero-Shot Relabeling of Weak Labels for Fine-Grained Semantic Indexing of Biomedical Literature. ECAI 2024: 2178-2185 - [c40]Anastasios Nentidis, Anastasia Krithara, Georgios Paliouras, Martin Krallinger, Luis Gascó Sánchez, Salvador Lima-López, Eulàlia Farré, Natalia V. Loukachevitch, Vera Davydova, Elena Tutubalina:
BioASQ at CLEF2024: The Twelfth Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge. ECIR (5) 2024: 490-497 - [i13]Anastasia Krithara, Fotis Aisopos, Vassiliki Rentoumi, Anastasios Nentidis, Konstantinos Bougiatiotis, Maria-Esther Vidal, Ernestina Menasalvas, Alejandro Rodríguez González, Eleftherios Samaras, Peter Garrard, Maria Torrente, Mariano Provencio Pulla, Nikos Dimakopoulos, Rui Mauricio, Jordi Rambla De Argila, Gian Gaetano Tartaglia, George Paliouras:
iASiS: Towards Heterogeneous Big Data Analysis for Personalized Medicine. CoRR abs/2407.06748 (2024) - 2023
- [j13]Anastasia Krithara, James G. Mork, Anastasios Nentidis, Georgios Paliouras:
The road from manual to automatic semantic indexing of biomedical literature: a 10 years journey. Frontiers Res. Metrics Anal. 8 (2023) - [j12]Anastasios Nentidis, Thomas Chatzopoulos, Anastasia Krithara, Grigorios Tsoumakas, Georgios Paliouras:
Large-scale investigation of weakly-supervised deep learning for the fine-grained semantic indexing of biomedical literature. J. Biomed. Informatics 146: 104499 (2023) - [j11]Ahmad Sakor, Samaneh Jozashoori, Emetis Niazmand, Ariam Rivas, Konstantinos Bougiatiotis, Fotis Aisopos, Enrique Iglesias, Philipp D. Rohde, Trupti Padiya, Anastasia Krithara, Georgios Paliouras, Maria-Esther Vidal:
Knowledge4COVID-19: A semantic-based approach for constructing a COVID-19 related knowledge graph from various sources and analyzing treatments' toxicities. J. Web Semant. 75: 100760 (2023) - [c39]Salvador Lima-López, Eulàlia Farré-Maduell, Luis Gascó, Anastasios Nentidis, Anastasia Krithara, Georgios Katsimpras, Georgios Paliouras, Martin Krallinger:
Overview of MedProcNER Task on Medical Procedure Detection and Entity Linking at BioASQ 2023. CLEF (Working Notes) 2023: 1-18 - [c38]Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara, Georgios Paliouras:
Overview of BioASQ Tasks 11b and Synergy11 in CLEF2023. CLEF (Working Notes) 2023: 19-26 - [c37]Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara, Salvador Lima-López, Eulàlia Farré-Maduell, Luis Gascó, Martin Krallinger, Georgios Paliouras:
Overview of BioASQ 2023: The Eleventh BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering. CLEF 2023: 227-250 - [c36]Anastasios Nentidis, Anastasia Krithara, Georgios Paliouras, Eulàlia Farré-Maduell, Salvador Lima-López, Martin Krallinger:
BioASQ at CLEF2023: The Eleventh Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge. ECIR (3) 2023: 577-584 - [i12]Anastasios Nentidis, Thomas Chatzopoulos, Anastasia Krithara, Grigorios Tsoumakas, Georgios Paliouras:
Large-scale fine-grained semantic indexing of biomedical literature based on weakly-supervised deep learning. CoRR abs/2301.09350 (2023) - [i11]Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara, Salvador Lima-López, Eulàlia Farré-Maduell, Luis Gascó, Martin Krallinger, Georgios Paliouras:
Overview of BioASQ 2023: The eleventh BioASQ challenge on Large-Scale Biomedical Semantic Indexing and Question Answering. CoRR abs/2307.05131 (2023) - 2022
- [j10]Vasileios Konstantakos, Anastasios Nentidis, Anastasia Krithara, Georgios Paliouras:
CRISPRedict: a CRISPR-Cas9 web tool for interpretable efficiency predictions. Nucleic Acids Res. 50(W1): 191-198 (2022) - [c35]Anastasios Nentidis, Georgios Katsimpras, Eirini Vandorou, Anastasia Krithara, Georgios Paliouras:
Overview of BioASQ Tasks 10a, 10b and Synergy10 in CLEF2022. CLEF (Working Notes) 2022: 171-178 - [c34]Antonio Miranda-Escalada, Luis Gascó, Salvador Lima-López, Eulàlia Farré-Maduell, Darryl Estrada, Anastasios Nentidis, Anastasia Krithara, Georgios Katsimpras, Georgios Paliouras, Martin Krallinger:
Overview of DisTEMIST at BioASQ: Automatic detection and normalization of diseases from clinical texts: results, methods, evaluation and multilingual resources. CLEF (Working Notes) 2022: 179-203 - [c33]Anastasios Nentidis, Georgios Katsimpras, Eirini Vandorou, Anastasia Krithara, Antonio Miranda-Escalada, Luis Gascó, Martin Krallinger, Georgios Paliouras:
Overview of BioASQ 2022: The Tenth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering. CLEF 2022: 337-361 - [c32]Anastasios Nentidis, Anastasia Krithara, Georgios Paliouras, Luis Gascó, Martin Krallinger:
BioASQ at CLEF2022: The Tenth Edition of the Large-scale Biomedical Semantic Indexing and Question Answering Challenge. ECIR (2) 2022: 429-435 - [c31]Eleni Koutsoni, Vasileios Konstantakos, Anastasios Nentidis, Anastasia Krithara, Georgios Paliouras:
Modeling the off-target effects of CRISPR-Cas9 experiments for the treatment of Duchenne Muscular Dystrophy. SETN 2022: 6:1-6:7 - [i10]Ahmad Sakor, Samaneh Jozashoori, Emetis Niazmand, Ariam Rivas, Konstantinos Bougiatiotis, Fotis Aisopos, Enrique Iglesias, Philipp D. Rohde, Trupti Padiya, Anastasia Krithara, Georgios Paliouras, Maria-Esther Vidal:
Knowledge4COVID-19: A Semantic-based Approach for Constructing a COVID-19 related Knowledge Graph from Various Sources and Analysing Treatments' Toxicities. CoRR abs/2206.07375 (2022) - [i9]Anastasios Nentidis, Georgios Katsimpras, Eirini Vandorou, Anastasia Krithara, Antonio Miranda-Escalada, Luis Gascó, Martin Krallinger, Georgios Paliouras:
Overview of BioASQ 2022: The tenth BioASQ challenge on Large-Scale Biomedical Semantic Indexing and Question Answering. CoRR abs/2210.06852 (2022) - 2021
- [j9]Anastasios Nentidis, Anastasia Krithara, Grigorios Tsoumakas, Georgios Paliouras:
What is all this new MeSH about? Int. J. Digit. Libr. 22(4): 319-337 (2021) - [c30]Anastasios Nentidis, Georgios Katsimpras, Eirini Vandorou, Anastasia Krithara, Georgios Paliouras:
Overview of BioASQ Tasks 9a, 9b and Synergy in CLEF2021. CLEF (Working Notes) 2021: 157-164 - [c29]Luis Gascó, Anastasios Nentidis, Anastasia Krithara, Darryl Estrada-Zavala, Renato Toshiyuki Murasaki, Elena Primo-Peña, Cristina Bojo-Canales, Georgios Paliouras, Martin Krallinger:
Overview of BioASQ 2021-MESINESP track. Evaluation of advance hierarchical classification techniques for scientific literature, patents and clinical trials. CLEF (Working Notes) 2021: 165-187 - [c28]Anastasios Nentidis, Georgios Katsimpras, Eirini Vandorou, Anastasia Krithara, Luis Gascó, Martin Krallinger, Georgios Paliouras:
Overview of BioASQ 2021: The Ninth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering. CLEF 2021: 239-263 - [c27]Anastasia Krithara, Anastasios Nentidis, Georgios Paliouras, Martin Krallinger, Antonio Miranda:
BioASQ at CLEF2021: Large-Scale Biomedical Semantic Indexing and Question Answering. ECIR (2) 2021: 624-630 - [i8]Anastasios Nentidis, Anastasia Krithara, Grigorios Tsoumakas, Georgios Paliouras:
What is all this new MeSH about? Exploring the semantic provenance of new descriptors in the MeSH thesaurus. CoRR abs/2101.08293 (2021) - [i7]Anastasios Nentidis, Anastasia Krithara, Grigorios Tsoumakas, Georgios Paliouras:
Harvesting the Public MeSH Note field. CoRR abs/2106.00302 (2021) - [i6]Anastasios Nentidis, Anastasia Krithara, Konstantinos Bougiatiotis, Martin Krallinger, Carlos Rodríguez Penagos, Marta Villegas, Georgios Paliouras:
Overview of BioASQ 2020: The eighth BioASQ challenge on Large-Scale Biomedical Semantic Indexing and Question Answering. CoRR abs/2106.14618 (2021) - [i5]Anastasios Nentidis, Georgios Katsimpras, Eirini Vandorou, Anastasia Krithara, Luis Gascó, Martin Krallinger, Georgios Paliouras:
Overview of BioASQ 2021: The ninth BioASQ challenge on Large-Scale Biomedical Semantic Indexing and Question Answering. CoRR abs/2106.14885 (2021) - 2020
- [j8]Anastasios Nentidis, Anastasia Krithara, Grigorios Tsoumakas, Georgios Paliouras:
Beyond MeSH: Fine-grained semantic indexing of biomedical literature based on weak supervision. Inf. Process. Manag. 57(5): 102282 (2020) - [c26]Konstantinos Bougiatiotis, Fotis Aisopos, Anastasios Nentidis, Anastasia Krithara, Georgios Paliouras:
Drug-Drug Interaction Prediction on a Biomedical Literature Knowledge Graph. AIME 2020: 122-132 - [c25]Anastasios Nentidis, Konstantinos Bougiatiotis, Anastasia Krithara, Georgios Paliouras:
iASiS Open Data Graph: Automated Semantic Integration of Disease-Specific Knowledge. CBMS 2020: 220-225 - [c24]Anastasios Nentidis, Anastasia Krithara, Konstantinos Bougiatiotis, Martin Krallinger, Carlos Rodríguez Penagos, Marta Villegas, Georgios Paliouras:
Overview of BioASQ 2020: The Eighth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering. CLEF 2020: 194-214 - [c23]Anastasios Nentidis, Anastasia Krithara, Konstantinos Bougiatiotis, Georgios Paliouras:
Overview of BioASQ 8a and 8b: Results of the Eighth Edition of the BioASQ Tasks a and b. CLEF (Working Notes) 2020 - [c22]Carlos Rodríguez Penagos, Anastasios Nentidis, Aitor Gonzalez-Agirre, Alejandro Asensio, Jordi Armengol-Estapé, Anastasia Krithara, Marta Villegas, Georgios Paliouras, Martin Krallinger:
Overview of MESINESP, a Spanish Medical Semantic Indexing Task within BioASQ 2020. CLEF (Working Notes) 2020 - [c21]Martin Krallinger, Anastasia Krithara, Anastasios Nentidis, Georgios Paliouras, Marta Villegas:
BioASQ at CLEF2020: Large-Scale Biomedical Semantic Indexing and Question Answering. ECIR (2) 2020: 550-556 - [c20]Despoina Kalfakakou, Anastasia Krithara, Georgios Paliouras:
Splice site prediction across different organisms: A transfer learning approach. SETN 2020: 48-55 - [i4]Anastasios Nentidis, Anastasia Krithara, Grigorios Tsoumakas, Georgios Paliouras:
Beyond MeSH: Fine-Grained Semantic Indexing of Biomedical Literature based on Weak Supervision. CoRR abs/2005.07638 (2020) - [i3]Anastasios Nentidis, Konstantinos Bougiatiotis, Anastasia Krithara, Georgios Paliouras:
Results of the seventh edition of the BioASQ Challenge. CoRR abs/2006.09174 (2020)
2010 – 2019
- 2019
- [c19]Anastasia Krithara, Fotis Aisopos, Vassiliki Rentoumi, Anastasios Nentidis, Konstantinos Bougiatiotis, Maria-Esther Vidal, Ernestina Menasalvas, Alejandro Rodríguez González, Eleftherios Samaras, Peter Garrard, Maria Torrente, Mariano Provencio Pulla, Nikos Dimakopoulos, Rui Mauricio, Jordi Rambla De Argila, Gian Gaetano Tartaglia, George Paliouras:
iASiS: Towards Heterogeneous Big Data Analysis for Personalized Medicine. CBMS 2019: 106-111 - [c18]Anastasios Nentidis, Anastasia Krithara, Grigorios Tsoumakas, Georgios Paliouras:
Beyond MeSH: Fine-Grained Semantic Indexing of Biomedical Literature Based on Weak Supervision. CBMS 2019: 180-185 - [c17]Anastasios Nentidis, Konstantinos Bougiatiotis, Anastasia Krithara, Georgios Paliouras:
Results of the Seventh Edition of the BioASQ Challenge. PKDD/ECML Workshops (2) 2019: 553-568 - [i2]Anastasios Nentidis, Konstantinos Bougiatiotis, Anastasia Krithara, Georgios Paliouras:
Semantic integration of disease-specific knowledge. CoRR abs/1912.08633 (2019) - 2018
- [j7]Manolis Koubarakis, George A. Vouros, Georgios Chalkiadakis, Vassilis P. Plagianakos, Christos Tjortjis, Ergina Kavallieratou, Dimitris Vrakas, Nikolaos Mavridis, Georgios Petasis, Konstantinos Blekas, Anastasia Krithara:
AI in Greece: The Case of Research on Linked Geospa al Data. AI Mag. 39(2): 91-96 (2018) - [j6]Foteini Kollintza-Kyriakoulia, Manolis Maragoudakis, Anastasia Krithara:
Measuring the Impact of Financial News and Social Media on Stock Market Modeling Using Time Series Mining Techniques. Algorithms 11(11): 181 (2018) - [j5]Frank Hopfgartner, Allan Hanbury, Henning Müller, Ivan Eggel, Krisztian Balog, Torben Brodt, Gordon V. Cormack, Jimmy Lin, Jayashree Kalpathy-Cramer, Noriko Kando, Makoto P. Kato, Anastasia Krithara, Tim Gollub, Martin Potthast, Evelyne Viegas, Simon Mercer:
Evaluation-as-a-Service for the Computational Sciences: Overview and Outlook. ACM J. Data Inf. Qual. 10(4): 15:1-15:32 (2018) - 2017
- [c16]Anastasios Nentidis, Konstantinos Bougiatiotis, Anastasia Krithara, Georgios Paliouras, Ioannis A. Kakadiaris:
Results of the fifth edition of the BioASQ Challenge. BioNLP 2017: 48-57 - [c15]Simos Kazantzidis, Anastasia Krithara, George Paliouras:
Splice Site Prediction: Transferring Knowledge Across Organisms. BIOINFORMATICS 2017: 160-167 - [c14]Ricardo Usbeck, Axel-Cyrille Ngonga Ngomo, Bastian Haarmann, Anastasia Krithara, Michael Röder, Giulio Napolitano:
7th Open Challenge on Question Answering over Linked Data (QALD-7). SemWebEval@ESWC 2017: 59-69 - [e2]Ricardo Usbeck, Axel-Cyrille Ngonga Ngomo, Jin-Dong Kim, Key-Sun Choi, Philipp Cimiano, Irini Fundulaki, Anastasia Krithara:
Joint Proceedings of BLINK2017: 2nd International Workshop on Benchmarking Linked Data and NLIWoD3: Natural Language Interfaces for the Web of Data co-located with 16th International Semantic Web Conference (ISWC 2017), Vienna, Austria, October 21st - to - 22nd, 2017. CEUR Workshop Proceedings 1932, CEUR-WS.org 2017 [contents] - 2016
- [j4]Lorraine Goeuriot, Steven Bedrick, Gareth J. F. Jones, Anastasia Krithara, Henning Müller, George Paliouras:
Report on the SIGIR 2016 Workshop on Medical Information Retrieval (MedIR). SIGIR Forum 50(2): 76-81 (2016) - [c13]Konstantinos Bougiatiotis, Anastasia Krithara:
Author Profiling using Complementary Second Order Attributes and Stylometric Features. CLEF (Working Notes) 2016: 836-845 - [c12]Steven Bedrick, Lorraine Goeuriot, Gareth J. F. Jones, Anastasia Krithara, Henning Müller, George Paliouras:
Medical Information Search Workshop (MEDIR). SIGIR 2016: 1243 - [e1]Irini Fundulaki, Anastasia Krithara, Axel-Cyrille Ngonga Ngomo, Vassiliki Rentoumi:
Proceedings of the Workshop on Benchmarking Linked Data (BLINK 2016) co-located with the 15th International Semantic Web Conference (ISWC), Kobe, Japan, October 18, 2016. CEUR Workshop Proceedings 1700, CEUR-WS.org 2016 [contents] - 2015
- [j3]George Tsatsaronis, Georgios Balikas, Prodromos Malakasiotis, Ioannis Partalas, Matthias Zschunke, Michael R. Alvers, Dirk Weissenborn, Anastasia Krithara, Sergios Petridis, Dimitris Polychronopoulos, Yannis Almirantis, John Pavlopoulos, Nicolas Baskiotis, Patrick Gallinari, Thierry Artières, Axel-Cyrille Ngonga Ngomo, Norman Heino, Éric Gaussier, Liliana Barrio-Alvers, Michael Schroeder, Ion Androutsopoulos, Georgios Paliouras:
An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition. BMC Bioinform. 16: 138:1-138:28 (2015) - [j2]Frank Hopfgartner, Allan Hanbury, Henning Müller, Noriko Kando, Simon Mercer, Jayashree Kalpathy-Cramer, Martin Potthast, Tim Gollub, Anastasia Krithara, Jimmy Lin, Krisztian Balog, Ivan Eggel:
Report on the Evaluation-as-a-Service (EaaS) Expert Workshop. SIGIR Forum 49(1): 57-65 (2015) - [c11]Georgios Balikas, Aris Kosmopoulos, Anastasia Krithara, Georgios Paliouras, Ioannis A. Kakadiaris:
Results of the BioASQ Tasks of the Question Answering Lab at CLEF 2015. CLEF (Working Notes) 2015 - [c10]Andreas Grivas, Anastasia Krithara, George Giannakopoulos:
Author Profiling using Stylometric and Structural Feature Groupings. CLEF (Working Notes) 2015 - [c9]Georgios Balikas, Anastasia Krithara, Ioannis Partalas, George Paliouras:
BioASQ: A Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering. MRDM@ECIR 2015: 26-39 - [c8]Gregory Katsios, Svitlana Vakulenko, Anastasia Krithara, Georgios Paliouras:
Towards Open Domain Event Extraction from Twitter: REVEALing Entity Relations. DeRiVE@ESWC 2015: 35-46 - [c7]Katerina Andreadou, Symeon Papadopoulos, Lazaros Apostolidis, Anastasia Krithara, Yiannis Kompatsiaris:
Media REVEALr: A Social Multimedia Monitoring and Intelligence System for Web Multimedia Verification. PAISI 2015: 1-20 - [p2]Vassiliki Rentoumi, Anastasia Krithara, Nikos Tzanos:
Predicting Sales Trends. Sequences in Language and Text 2015: 201-216 - [i1]Allan Hanbury, Henning Müller, Krisztian Balog, Torben Brodt, Gordon V. Cormack, Ivan Eggel, Tim Gollub, Frank Hopfgartner, Jayashree Kalpathy-Cramer, Noriko Kando, Anastasia Krithara, Jimmy Lin, Simon Mercer, Martin Potthast:
Evaluation-as-a-Service: Overview and Outlook. CoRR abs/1512.07454 (2015) - 2014
- [c6]Dimitris Polychronopoulos, Anastasia Krithara, Christoforos Nikolaou, Georgios Paliouras, Yannis Almirantis, George Giannakopoulos:
Analysis and Classification of Constrained DNA Elements with N-gram Graphs and Genomic Signatures. AlCoB 2014: 220-234 - [c5]Georgios Balikas, Ioannis Partalas, Axel-Cyrille Ngonga Ngomo, Anastasia Krithara, Georgios Paliouras:
Results of the BioASQ Track of the Question Answering Lab at CLEF 2014. CLEF (Working Notes) 2014: 1181-1193 - [c4]Georgios Giannoulis, Anastasia Krithara, Christos Karatsalos, Georgios Paliouras:
Splice Site Recognition Using Transfer Learning. SETN 2014: 341-353 - 2013
- [c3]Anastasia Krithara, Georgios Paliouras:
TL-PLSA: Transfer Learning between Domains with Different Classes. ICDM 2013: 419-427 - 2011
- [j1]Anastasia Krithara, Massih-Reza Amini, Cyril Goutte, Jean-Michel Renders:
Learning aspect models with partially labeled data. Pattern Recognit. Lett. 32(2): 297-304 (2011) - [p1]Georgios Petasis, Vangelis Karkaletsis, Georgios Paliouras, Anastasia Krithara, Elias Zavitsanos:
Ontology Population and Enrichment: State of the Art. Knowledge-Driven Multimedia Information Extraction and Ontology Evolution 2011: 134-166 - 2010
- [c2]Anastasia Krithara, Massih-Reza Amini, Cyril Goutte, Jean-Michel Renders:
An Extension of the Aspect PLSA Model to Active and Semi-Supervised Learning for Text Classification. SETN 2010: 183-192
2000 – 2009
- 2008
- [c1]Anastasia Krithara, Massih-Reza Amini, Jean-Michel Renders, Cyril Goutte:
Semi-supervised Document Classification with a Mislabeling Error Model. ECIR 2008: 370-381
Coauthor Index
aka: George Paliouras
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