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2020 – today
- 2023
[j5]Siqi Chen, Xuhua Yan, Ruiqing Zheng
, Min Li:
Bubble: a fast single-cell RNA-seq imputation using an autoencoder constrained by bulk RNA-seq data. Briefings Bioinform. 24(1) (2023)- [j4]Xuhua Yan, Ruiqing Zheng, Fang-Xiang Wu, Min Li:
CLAIRE: contrastive learning-based batch correction framework for better balance between batch mixing and preservation of cellular heterogeneity. Bioinform. 39(3) (2023) - [j3]Xuhua Yan, Ruiqing Zheng, Jinmiao Chen, Min Li:
scNCL: transferring labels from scRNA-seq to scATAC-seq data with neighborhood contrastive regularization. Bioinform. 39(8) (2023) - 2022
- [j2]Xuhua Yan, Ruiqing Zheng, Min Li:
GLOBE: a contrastive learning-based framework for integrating single-cell transcriptome datasets. Briefings Bioinform. 23(5) (2022) - 2021
- [j1]Zhenlan Liang, Min Li, Ruiqing Zheng, Yu Tian, Xuhua Yan, Jin Chen, Fang-Xiang Wu, Jianxin Wang:
SSRE: Cell Type Detection Based on Sparse Subspace Representation and Similarity Enhancement. Genom. Proteom. Bioinform. 19(2): 282-291 (2021) - [c2]Yanping Zeng, Xuhua Yan, Zhenlan Liang, Ruiqing Zheng, Min Li:
MKG: a mutual information based method to infer single cell gene regulatory network. BIBM 2021: 223-228 - [c1]Zhenlan Liang, Ruiqing Zheng, Siqi Chen, Xuhua Yan, Min Li:
DeepCI: a deep learning based clustering method for single cell RNA-seq data. BIBM 2021: 302-307
Coauthor Index
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