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ORCIDAlexei J. Drummond
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Journal Articles
- 2023
[j15]Alexei J. Drummond
, Kylie Chen, Fábio K. Mendes, Dong Xie:
LinguaPhylo: A probabilistic model specification language for reproducible phylogenetic analyses. PLoS Comput. Biol. 19(7) (2023)- 2020
- [j14]Jordan Douglas, Richard Kingston, Alexei J. Drummond:
Bayesian inference and comparison of stochastic transcription elongation models. PLoS Comput. Biol. 16(2) (2020) - 2019
- [j13]Remco R. Bouckaert, Timothy G. Vaughan, Joëlle Barido-Sottani, Sebastián Duchêne, Mathieu Fourment, Alexandra Gavryushkina, Joseph Heled, Graham Jones, Denise Kühnert, Nicola De Maio, Michael Matschiner, Fábio K. Mendes, Nicola F. Müller, Huw A. Ogilvie, Louis du Plessis, Alex Popinga, Andrew Rambaut, David A. Rasmussen, Igor Siveroni, Marc A. Suchard, Chieh-Hsi Wu, Dong Xie, Chi Zhang, Tanja Stadler, Alexei J. Drummond:
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS Comput. Biol. 15(4) (2019) - [j12]Jing Yang, Nicola F. Müller, Remco R. Bouckaert, Bing Xu, Alexei J. Drummond:
Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration. PLoS Comput. Biol. 15(8) (2019) - 2014
- [j11]Timothy G. Vaughan, Denise Kühnert, Alex Popinga, David Welch, Alexei J. Drummond:
Efficient Bayesian inference under the structured coalescent. Bioinform. 30(16): 2272-2279 (2014) - [j10]Remco R. Bouckaert, Joseph Heled, Denise Kühnert, Timothy G. Vaughan, Chieh-Hsi Wu, Dong Xie, Marc A. Suchard, Andrew Rambaut, Alexei J. Drummond:
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis. PLoS Comput. Biol. 10(4) (2014) - [j9]Bram Vrancken, Andrew Rambaut, Marc A. Suchard, Alexei J. Drummond, Guy Baele, Inge Derdelinckx, Eric Van Wijngaerden, Anne-Mieke Vandamme, Kristel Van Laethem, Philippe Lemey:
The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates. PLoS Comput. Biol. 10(4) (2014) - [j8]Alexandra Gavryushkina, David Welch, Tanja Stadler, Alexei J. Drummond:
Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration. PLoS Comput. Biol. 10(12) (2014) - 2013
- [j7]Alexandra Gavryushkina, David Welch, Alexei J. Drummond:
Recursive algorithms for phylogenetic tree counting. Algorithms Mol. Biol. 8: 26 (2013) - 2012
- [j6]Matthew Kearse, Richard Moir, Amy Wilson, Steven Stones-Havas, Matthew Cheung, Shane S. Sturrock, Simon Buxton, Alex Cooper, Sidney Markowitz, Chris Duran, Tobias Thierer, Bruce Ashton, Peter L. Meintjes, Alexei J. Drummond:
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinform. 28(12): 1647-1649 (2012) - 2010
- [j5]Timothy G. Vaughan, Peter D. Drummond, Alexei J. Drummond:
A retrodictive stochastic simulation algorithm. J. Comput. Phys. 229(10): 3777-3791 (2010) - 2009
- [j4]Philippe Lemey, Andrew Rambaut, Alexei J. Drummond, Marc A. Suchard:
Bayesian Phylogeography Finds Its Roots. PLoS Comput. Biol. 5(9) (2009) - 2007
- [j3]Philippe Lemey, Sergei L. Kosakovsky Pond, Alexei J. Drummond, Oliver G. Pybus, Beth Shapiro, Helena Barroso, Nuno Taveira, Andrew Rambaut:
Synonymous Substitution Rates Predict HIV Disease Progression as a Result of Underlying Replication Dynamics. PLoS Comput. Biol. 3(2) (2007) - 2005
- [j2]Gerton Lunter, István Miklós, Alexei J. Drummond, Jens Ledet Jensen, Jotun Hein:
Bayesian coestimation of phylogeny and sequence alignment. BMC Bioinform. 6: 83 (2005) - 2001
- [j1]Alexei J. Drummond, Korbinian Strimmer:
PAL: an object-oriented programming library for molecular evolution and phylogenetics. Bioinform. 17(7): 662-663 (2001)
Conference and Workshop Papers
- 2013
- [c4]Bram Vrancken, Andrew Rambaut, Guy Baele, Anne-Mieke Vandamme, Kristel Van Laethem, Eric Van Wijngaerden, Alexei J. Drummond, Marc A. Suchard, Philippe Lemey:
Reconstruction of an HIV Transmission History in a Bayesian Coalescent Framework. IWBBIO 2013: 555-556 - 2008
- [c3]Sebastian Höhna, Michael Defoin-Platel, Alexei J. Drummond:
Clock-constrained tree proposal operators in Bayesian phylogenetic inference. BIBE 2008: 1-7 - 2004
- [c2]Matthew Goode, Korbinian Strimmer, Alexei J. Drummond, Ed Buckler, Allen G. Rodrigo:
A Brief Introduction to the Phylogentics Analysis Library V1.5. APBC 2004: 175-179 - 2003
- [c1]Gerton Lunter, István Miklós, Alexei J. Drummond, Jens Ledet Jensen, Jotun Hein:
Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model. WABI 2003: 228-244
Informal and Other Publications
- 2021
- [i1]Alexei J. Drummond, Alex Popinga:
Bayesian inference of the climbing grade scale. CoRR abs/2111.08140 (2021)
Coauthor Index
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