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2020 – today
- 2023
[j8]Mateusz Jundzill
, Riccardo Spott, Mara Lohde, Martin Hölzer, Adrian Viehweger, Christian Brandt:
Managing and monitoring a pandemic: showcasing a practical approach for the genomic surveillance of SARS-CoV-2. Database J. Biol. Databases Curation 2023 (2023)- [j7]Guillermo Rangel-Pineros, Alexandre Almeida, Martin Beracochea, Ekaterina A. Sakharova, Manja Marz, Alejandro Reyes, Martin Hölzer, Robert D. Finn:
VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models. PLoS Comput. Biol. 19(8) (2023) - 2022
- [j6]Alice Wittig, Fábio Miranda, Martin Hölzer, Tom Altenburg, Jakub M. Bartoszewicz, Sebastian Beyvers, Marius A. Dieckmann, Ulrich Genske, Sven H. Giese, Melania Nowicka, Hugues Richard, Henning Schiebenhoefer, Anna-Juliane Schmachtenberg, Paul Sieben, Ming Tang, Julius Tembrockhaus, Bernhard Y. Renard, Stephan Fuchs:
CovRadar: continuously tracking and filtering SARS-CoV-2 mutations for genomic surveillance. Bioinform. 38(17): 4223-4225 (2022) - 2021
- [j5]Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Robert D. Finn, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist, Renó Kmiecinski, Denise Kühnert, Gorka Lasso, Pieter Libin, Markus List, Hannah F. Löchel, Maria Jesus Martin, Roman Martin, Julian O. Matschinske, Alice C. McHardy, Pedro Mendes, Jaina Mistry, Vincent Navratil, Eric P. Nawrocki, Áine Niamh O'toole, Nancy Ontiveros-Palacios, Anton I. Petrov, Guillermo Rangel-Pineros, Nicole Redaschi, Susanne Reimering, Knut Reinert, Alejandro Reyes, Lorna J. Richardson, David L. Robertson, Sepideh Sadegh, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams, Manja Marz:
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research. Briefings Bioinform. 22(2): 642-663 (2021) - [j4]Maximilian Collatz, Florian Mock, Emanuel Barth, Martin Hölzer, Konrad Sachse, Manja Marz:
EpiDope: a deep neural network for linear B-cell epitope prediction. Bioinform. 37(4): 448-455 (2021) - [j3]Martin Hölzer, Manja Marz:
PoSeiDon: a Nextflow pipeline for the detection of evolutionary recombination events and positive selection. Bioinform. 37(7): 1018-1020 (2021) - [j2]Maximilian Collatz, Florian Mock, Emanuel Barth, Martin Hölzer, Konrad Sachse, Manja Marz:
EpiDope: a deep neural network for linear B-cell epitope prediction. Bioinform. 37(12): 1784 (2021) - [j1]Renaud Van Damme, Martin Hölzer, Adrian Viehweger, Bettina Müller, Erik Bongcam-Rudloff, Christian Brandt:
Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN). PLoS Comput. Biol. 17(2) (2021)
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