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Journal Articles
- 2023
[j19]Meiyu Duan
, Yueying Wang, Dong Zhao, Hongmei Liu, Gongyou Zhang, Kewei Li, Haotian Zhang, Lan Huang, Ruochi Zhang, Fengfeng Zhou:
Orchestrating information across tissues via a novel multitask GAT framework to improve quantitative gene regulation relation modeling for survival analysis. Briefings Bioinform. 24(4) (2023)- [j18]Meiyu Duan, Yaqing Liu, Dong Zhao, Haijun Li, Gongyou Zhang, Hongmei Liu, Yueying Wang, Yusi Fan, Lan Huang, Fengfeng Zhou:
Gender-specific dysregulations of nondifferentially expressed biomarkers of metastatic colon cancer. Comput. Biol. Chem. 104: 107858 (2023) - [j17]Fei Li, Shuai Liu, Kewei Li, Yaqi Zhang, Meiyu Duan, Zhaomin Yao, Gancheng Zhu, Yutong Guo, Ying Wang, Lan Huang, Fengfeng Zhou:
EpiTEAmDNA: Sequence feature representation via transfer learning and ensemble learning for identifying multiple DNA epigenetic modification types across species. Comput. Biol. Medicine 160: 107030 (2023) - [j16]Changfan Luo, Yiping Xu, Yongkang Shao, Zihan Wang, Jianzheng Hu, Jiawei Yuan, Yuchen Liu, Meiyu Duan, Lan Huang, Fengfeng Zhou:
EvaGoNet: An integrated network of variational autoencoder and Wasserstein generative adversarial network with gradient penalty for binary classification tasks. Inf. Sci. 629: 109-122 (2023) - 2022
- [j15]Yaqi Zhang, Gancheng Zhu, Kewei Li, Fei Li, Lan Huang, Meiyu Duan, Fengfeng Zhou:
HLAB: learning the BiLSTM features from the ProtBert-encoded proteins for the class I HLA-peptide binding prediction. Briefings Bioinform. 23(5) (2022) - [j14]Meiyu Duan, Yueying Wang, Ya Qiao, Yangyang Wang, Xingyuan Pan, Zhuyu Hu, Yanyue Ran, Xian Fu, Yusi Fan, Lan Huang, Fengfeng Zhou:
Pan-cancer identification of the relationship of metabolism-related differentially expressed transcription regulation with non-differentially expressed target genes via a gated recurrent unit network. Comput. Biol. Medicine 148: 105883 (2022) - [j13]Qian Wang, Meiyu Duan, Yusi Fan, Shuai Liu, Yanjiao Ren, Lan Huang, Fengfeng Zhou:
Transforming OMIC features for classification using siamese convolutional networks. J. Bioinform. Comput. Biol. 20(3): 2250013:1-2250013:23 (2022) - 2021
- [j12]Shuai Liu, Han Li, Qichen Zheng, Lu Yang, Meiyu Duan, Xin Feng, Fei Li, Lan Huang, Fengfeng Zhou:
Survival Time Prediction of Breast Cancer Patients Using Feature Selection Algorithm Crystall. IEEE Access 9: 24433-24445 (2021) - [j11]Tong Shao, Wenfang Wang, Meiyu Duan, Jiahui Pan, Zhuoyuan Xin, Baoyue Liu, Fengfeng Zhou, Guoqing Wang:
Application of Bayesian phylogenetic inference modelling for evolutionary genetic analysis and dynamic changes in 2019-nCoV. Briefings Bioinform. 22(2): 896-904 (2021) - [j10]Jinpu Cai, Yuyang Xu, Wen Zhang, Shiying Ding, Yuewei Sun, Jingyi Lyu, Meiyu Duan, Shuai Liu, Lan Huang, Fengfeng Zhou:
A comprehensive comparison of residue-level methylation levels with the regression-based gene-level methylation estimations by ReGear. Briefings Bioinform. 22(4) (2021) - [j9]Sida Gao, Puli Wang, Yuming Feng, Xuchen Xie, Meiyu Duan, Yusi Fan, Shuai Liu, Lan Huang, Fengfeng Zhou:
RIFS2D: A two-dimensional version of a randomly restarted incremental feature selection algorithm with an application for detecting low-ranked biomarkers. Comput. Biol. Medicine 133: 104405 (2021) - [j8]Meiyu Duan, Lei Zhang, Yueying Wang, Yusi Fan, Shuai Liu, Qiong Yu, Lan Huang, Fengfeng Zhou:
Computational pan-cancer characterization of model-based quantitative transcription regulations dysregulated in regional lymph node metastasis. Comput. Biol. Medicine 135: 104571 (2021) - [j7]Fengfeng Zhou, Meiyu Duan:
Impacts of high-quality public data: Special issue on integrating public and in-house biomedical data. J. Bioinform. Comput. Biol. 19(3): 2102002:1-2102002:2 (2021) - 2020
- [j6]Yexian Zhang, Ruoyao Shi, Chaorong Chen, Meiyu Duan, Shuai Liu, Yanjiao Ren, Lan Huang, Xiaofeng Dai, Fengfeng Zhou:
ELMO: An Efficient Logistic Regression-Based Multi-Omic Integrated Analysis Method for Breast Cancer Intrinsic Subtypes. IEEE Access 8: 5121-5130 (2020) - [j5]Jialiang Li, Zhaomin Yao, Meiyu Duan, Shuai Liu, Fei Li, Haiyang Zhu, Zhiqiang Xia, Lan Huang, Fengfeng Zhou:
MuscNet, a Weighted Voting Model of Multi-Source Connectivity Networks to Predict Mild Cognitive Impairment Using Resting-State Functional MRI. IEEE Access 8: 174023-174031 (2020) - [j4]Zheng Chen, Meng Pang, Zixin Zhao, Shuainan Li, Rui Miao, Yifan Zhang, Xiaoyue Feng, Xin Feng, Yexian Zhang, Meiyu Duan, Lan Huang, Fengfeng Zhou:
Feature selection may improve deep neural networks for the bioinformatics problems. Bioinform. 36(5): 1542-1552 (2020) - [j3]Shuhan Yang, Bo Li, Yinda Zhang, Meiyu Duan, Shuai Liu, Yexian Zhang, Xin Feng, Renbo Tan, Lan Huang, Fengfeng Zhou:
Selection of features for patient-independent detection of seizure events using scalp EEG signals. Comput. Biol. Medicine 119: 103671 (2020) - [j2]Zhipeng Wei, Shiying Ding, Meiyu Duan, Shuai Liu, Lan Huang, Fengfeng Zhou:
FeSTwo, a two-step feature selection algorithm based on feature engineering and sampling for the chronological age regression problem. Comput. Biol. Medicine 125: 104008 (2020) - [j1]Lin Yan, Kai Liu, Evgeny Belyaev, Meiyu Duan:
RTL3D: real-time LIDAR-based 3D object detection with sparse CNN. IET Comput. Vis. 14(5): 224-232 (2020)
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