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Journal Articles
- 2015
[j11]Samuel A. Danziger, David J. Reiss, Alexander V. Ratushny, Jennifer J. Smith, Christopher L. Plaisier
, John D. Aitchison, Nitin S. Baliga:
Bicluster Sampled Coherence Metric (BSCM) provides an accurate environmental context for phenotype predictions. BMC Syst. Biol. 9(S-2): S1 (2015)- 2014
- [j10]Christopher L. Plaisier, Fang-Yin Lo, Justin Ashworth, Aaron N. Brooks, Karlyn D. Beer, Amardeep Kaur, Min Pan, David J. Reiss, Marc T. Facciotti, Nitin S. Baliga:
Evolution of context dependent regulation by expansion of feast/famine regulatory proteins. BMC Syst. Biol. 8: 122 (2014) - [j9]Serdar Turkarslan, Elisabeth J. Wurtmann, Wei-Ju Wu, Ning Jiang, J. Christopher Bare, Karen Foley, David J. Reiss, Pavel S. Novichkov, Nitin S. Baliga:
Network portal: a database for storage, analysis and visualization of biological networks. Nucleic Acids Res. 42(Database-Issue): 184-190 (2014) - 2010
- [j8]Ahrim Youn, David J. Reiss, Werner Stuetzle:
Learning transcriptional networks from the integration of ChIP-chip and expression data in a non-parametric model. Bioinform. 26(15): 1879-1886 (2010) - [j7]J. Christopher Bare, Tie Koide, David J. Reiss, Dan Tenenbaum, Nitin S. Baliga:
Integration and visualization of systems biology data in context of the genome. BMC Bioinform. 11: 382 (2010) - [j6]Marc T. Facciotti, Wyming Lee Pang, Fang-Yin Lo, Kenia Whitehead, Tie Koide, Ken-ichi Masumura, Min Pan, Amardeep Kaur, David J. Larsen, David J. Reiss, Linh Hoang, Ewa Kalisiak, Trent Northen, Sunia A. Trauger, Gary Siuzdak, Nitin S. Baliga:
Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis. BMC Syst. Biol. 4: 64 (2010) - 2008
- [j5]David J. Reiss, Marc T. Facciotti, Nitin S. Baliga:
Model-based deconvolution of genome-wide DNA binding. Bioinform. 24(3): 396-403 (2008) - 2007
- [j4]Iliana Avila-Campillo, Kevin Drew, John Lin, David J. Reiss, Richard Bonneau:
BioNetBuilder: automatic integration of biological networks. Bioinform. 23(3): 392-393 (2007) - 2006
- [j3]Paul T. Shannon, David J. Reiss, Richard Bonneau, Nitin S. Baliga:
The Gaggle: An open-source software system for integrating bioinformatics software and data sources. BMC Bioinform. 7: 176 (2006) - [j2]David J. Reiss, Nitin S. Baliga, Richard Bonneau:
Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks. BMC Bioinform. 7: 280 (2006) - 2005
- [j1]David J. Reiss, Iliana Avila-Campillo, Vesteinn Thorsson, Benno Schwikowski, Timothy Galitski:
Tools enabling the elucidation of molecular pathways active in human disease: Application to Hepatitis C virus infection. BMC Bioinform. 6: 154 (2005)
Conference and Workshop Papers
- 2004
- [c1]David J. Reiss, Benno Schwikowski:
Predicting protein-peptide interactions via a network-based motif sampler. ISMB/ECCB (Supplement of Bioinformatics) 2004: 274-282
Coauthor Index
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