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2020 – today
- 2023
[j28]Kobe Janssen, Ramon Duran-Romaña
, Guy Bottu, Mainak Guharoy, Alexander Botzki, Frederic Rousseau, Joost Schymkowitz:
SNPeffect 5.0: large-scale structural phenotyping of protein coding variants extracted from next-generation sequencing data using AlphaFold models. BMC Bioinform. 24(1): 287 (2023)- 2021
- [j27]Daniele Raimondi, Gabriele Orlando, Emiel Michiels, Donya Pakravan, Anna Bratek-Skicki, Ludo Van Den Bosch, Yves Moreau, Frederic Rousseau, Joost Schymkowitz:
In silico prediction of in vitro protein liquid-liquid phase separation experiments outcomes with multi-head neural attention. Bioinform. 37(20): 3473-3479 (2021) - 2020
- [j26]Reshmi Ramakrishnan, Bert Houben, Lukasz Kreft, Alexander Botzki, Joost Schymkowitz, Frederic Rousseau:
Protein Homeostasis Database: protein quality control in E.coli. Bioinform. 36(3): 948-949 (2020) - [j25]Nikolaos N. Louros, Katerina Konstantoulea, Matthias De vleeschouwer, Meine Ramakers, Joost Schymkowitz, Frederic Rousseau:
WALTZ-DB 2.0: an updated database containing structural information of experimentally determined amyloid-forming peptides. Nucleic Acids Res. 48(Database-Issue): D389-D393 (2020)
2010 – 2019
- 2019
- [j24]Reshmi Ramakrishnan, Bert Houben, Frederic Rousseau, Joost Schymkowitz:
Differential proteostatic regulation of insoluble and abundant proteins. Bioinform. 35(20): 4098-4107 (2019) - 2016
- [j23]Ana Zafra Ruano, Elisa Cilia, José R. Couceiro, Javier Ruiz Sanz, Joost Schymkowitz, Frederic Rousseau, Irene Luque, Tom Lenaerts:
From Binding-Induced Dynamic Effects in SH3 Structures to Evolutionary Conserved Sectors. PLoS Comput. Biol. 12(5) (2016) - 2015
- [j22]Jacinte Beerten, Joost J. J. van Durme, Rodrigo Gallardo, Emidio Capriotti, Louise C. Serpell, Frederic Rousseau, Joost Schymkowitz:
WALTZ-DB: a benchmark database of amyloidogenic hexapeptides. Bioinform. 31(10): 1698-1700 (2015) - [j21]Greet De Baets, Joost J. J. van Durme, Rob van der Kant, Joost Schymkowitz, Frederic Rousseau:
Solubis: optimize your protein. Bioinform. 31(15): 2580-2582 (2015) - [j20]Rafael Zambrano, Oscar Conchillo-Solé, Valentin Iglesias, Ricard Illa, Frederic Rousseau, Joost Schymkowitz, Raimon Sabate, Xavier Daura, Salvador Ventura:
PrionW: a server to identify proteins containing glutamine/asparagine rich prion-like domains and their amyloid cores. Nucleic Acids Res. 43(Webserver-Issue): W331-W337 (2015) - [j19]Raimon Sabate, Frederic Rousseau, Joost Schymkowitz, Salvador Ventura:
What Makes a Protein Sequence a Prion? PLoS Comput. Biol. 11(1) (2015) - [j18]Greet De Baets, Loic Van Doorn, Frederic Rousseau, Joost Schymkowitz:
Increased Aggregation Is More Frequently Associated to Human Disease-Associated Mutations Than to Neutral Polymorphisms. PLoS Comput. Biol. 11(9) (2015) - 2013
- [j17]Sebastian Maurer-Stroh, He Gao, Hao Han, Lies Baeten, Joost Schymkowitz, Frederic Rousseau, Louxin Zhang, Frank Eisenhaber:
Motif Discovery with Data Mining in 3D protein Structure Databases: Discovery, Validation and Prediction of the U-Shape zinc binding ("Huf-zinc") Motif. J. Bioinform. Comput. Biol. 11(1) (2013) - 2012
- [j16]Greet De Baets, Joost J. J. van Durme, Joke Reumers, Sebastian Maurer-Stroh, Peter Vanhee, Joaquín Dopazo, Joost Schymkowitz, Frederic Rousseau:
SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants. Nucleic Acids Res. 40(Database-Issue): 935-939 (2012) - 2011
- [j15]Joost J. J. van Durme, Javier Delgado Blanco, Francois Stricher, Luis Serrano, Joost Schymkowitz, Frederic Rousseau:
A graphical interface for the FoldX forcefield. Bioinform. 27(12): 1711-1712 (2011) - [j14]Peter Vanhee, Erik Verschueren, Lies Baeten, Francois Stricher, Luis Serrano, Frederic Rousseau, Joost Schymkowitz:
BriX: a database of protein building blocks for structural analysis, modeling and design. Nucleic Acids Res. 39(Database-Issue): 435-442 (2011) - [j13]Greet De Baets, Joke Reumers, Javier Delgado Blanco, Joaquín Dopazo, Joost Schymkowitz, Frederic Rousseau:
An Evolutionary Trade-Off between Protein Turnover Rate and Protein Aggregation Favors a Higher Aggregation Propensity in Fast Degrading Proteins. PLoS Comput. Biol. 7(6) (2011) - 2010
- [j12]Peter Vanhee, Francois Stricher, Lies Baeten, Erik Verschueren, Luis Serrano, Frederic Rousseau, Joost Schymkowitz:
Modeling protein-peptide interactions using protein fragments: fitting the pieces? BMC Bioinform. 11(S-10): O1 (2010) - [j11]Peter Vanhee, Joke Reumers, Francois Stricher, Lies Baeten, Luis Serrano, Joost Schymkowitz, Frederic Rousseau:
PepX: a structural database of non-redundant protein-peptide complexes. Nucleic Acids Res. 38(Database-Issue): 545-551 (2010)
2000 – 2009
- 2009
- [j10]Joke Reumers, Joost Schymkowitz, Frederic Rousseau:
Using structural bioinformatics to investigate the impact of non synonymous SNPs and disease mutations: scope and limitations. BMC Bioinform. 10(S-8): 9 (2009) - [j9]Tom Lenaerts, Jesper Ferkinghoff-Borg, Joost Schymkowitz, Frederic Rousseau:
Information theoretical quantification of cooperativity in signalling complexes. BMC Syst. Biol. 3: 9 (2009) - [j8]Joost J. J. van Durme, Sebastian Maurer-Stroh, Rodrigo Gallardo, Hannah Wilkinson, Frederic Rousseau, Joost Schymkowitz:
Accurate Prediction of DnaK-Peptide Binding via Homology Modelling and Experimental Data. PLoS Comput. Biol. 5(8) (2009) - 2008
- [j7]Joke Reumers, Lucía Conde, Ignacio Medina, Sebastian Maurer-Stroh, Joost J. J. van Durme, Joaquín Dopazo, Frederic Rousseau, Joost Schymkowitz:
Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases. Nucleic Acids Res. 36(Database-Issue): 825-829 (2008) - [j6]Ignacio E. Sánchez, Pedro Beltrão, Francois Stricher, Joost Schymkowitz, Jesper Ferkinghoff-Borg, Frederic Rousseau, Luis Serrano:
Genome-Wide Prediction of SH2 Domain Targets Using Structural Information and the FoldX Algorithm. PLoS Comput. Biol. 4(4) (2008) - [j5]Lies Baeten, Joke Reumers, Vicente Tur, François Stricher, Tom Lenaerts, Luis Serrano, Frederic Rousseau, Joost Schymkowitz:
Reconstruction of Protein Backbones from the BriX Collection of Canonical Protein Fragments. PLoS Comput. Biol. 4(5) (2008) - [c1]Joke Reumers, Joost Schymkowitz, Frederic Rousseau:
Using structural bioinformatics to investigate the impact of non synonymous SNPs and disease mutations: scope and limitations. AIMM 2008 - 2006
- [j4]Joke Reumers, Sebastian Maurer-Stroh, Joost Schymkowitz, Frederic Rousseau:
SNPeffect v2.0: a new step in investigating the molecular phenotypic effects of human non-synonymous SNPs. Bioinform. 22(17): 2183-2185 (2006) - [j3]Lucía Conde, Juan M. Vaquerizas, Hernán Dopazo, Leonardo Arbiza, Joke Reumers, Frederic Rousseau, Joost Schymkowitz, Joaquín Dopazo:
PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes. Nucleic Acids Res. 34(Web-Server-Issue): 621-625 (2006) - 2005
- [j2]Joke Reumers, Joost Schymkowitz, Jesper Ferkinghoff-Borg, Francois Stricher, Luis Serrano, Frederic Rousseau:
SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs. Nucleic Acids Res. 33(Database-Issue): 527-532 (2005) - [j1]Joost Schymkowitz, Jesper Borg, Francois Stricher, Robby Nys, Frederic Rousseau, Luis Serrano:
The FoldX web server: an online force field. Nucleic Acids Res. 33(Web-Server-Issue): 382-388 (2005)
Coauthor Index
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