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Journal Articles
- 2024
[j3]Jingxiong Li
, Sunyi Zheng, Zhongyi Shui, Shichuan Zhang, Linyi Yang, Yuxuan Sun, Yunlong Zhang, Honglin Li, Yuanxin Ye, Peter M. A. van Ooijen, Kang Li, Lin Yang:
Masked Conditional Variational Autoencoders for Chromosome Straightening. IEEE Trans. Medical Imaging 43(1): 216-228 (2024)- 2020
- [j2]Sunyi Zheng, Xiaonan Cui, Marleen Vonder, Raymond N. J. Veldhuis, Zhaoxiang Ye, Rozemarijn Vliegenthart, Matthijs Oudkerk, Peter M. A. van Ooijen:
Deep learning-based pulmonary nodule detection: Effect of slab thickness in maximum intensity projections at the nodule candidate detection stage. Comput. Methods Programs Biomed. 196: 105620 (2020) - [j1]Sunyi Zheng, Jiapan Guo, Xiaonan Cui, Raymond N. J. Veldhuis, Matthijs Oudkerk, Peter M. A. van Ooijen:
Automatic Pulmonary Nodule Detection in CT Scans Using Convolutional Neural Networks Based on Maximum Intensity Projection. IEEE Trans. Medical Imaging 39(3): 797-805 (2020)
Conference and Workshop Papers
- 2024
- [c10]Zhongyi Shui, Sunyi Zheng, Chenglu Zhu, Shichuan Zhang, Xiaoxuan Yu, Honglin Li, Jingxiong Li, Pingyi Chen, Lin Yang:
DPA-P2PNet: Deformable Proposal-Aware P2PNet for Accurate Point-Based Cell Detection. AAAI 2024: 4864-4872 - [c9]Yuxuan Sun, Chenglu Zhu, Sunyi Zheng, Kai Zhang, Lin Sun, Zhongyi Shui, Yunlong Zhang, Honglin Li, Lin Yang:
PathAsst: A Generative Foundation AI Assistant towards Artificial General Intelligence of Pathology. AAAI 2024: 5034-5042 - [c8]Shichuan Zhang, Sunyi Zheng, Zhongyi Shui, Lin Yang:
HLS-FGVC: Hierarchical Label Semantics Enhanced Fine-Grained Visual Classification. ICASSP 2024: 7370-7374 - [c7]Yuxuan Sun, Chenglu Zhu, Sunyi Zheng, Yunlong Zhang, Honglin Li, Lin Yang:
Context-Aware Text-Assisted Multimodal Framework for Cervical Cytology Cell Diagnosis and Chatting. ICME 2024: 1-6 - 2023
- [c6]Shichuan Zhang, Sunyi Zheng, Zhongyi Shui, Honglin Li, Lin Yang:
Multi-modal Learning with Missing Modality in Predicting Axillary Lymph Node Metastasis. BIBM 2023: 2395-2400 - [c5]Honglin Li, Chenglu Zhu, Yunlong Zhang, Yuxuan Sun, Zhongyi Shui, Wenwei Kuang, Sunyi Zheng, Lin Yang:
Task-Specific Fine-Tuning via Variational Information Bottleneck for Weakly-Supervised Pathology Whole Slide Image Classification. CVPR 2023: 7454-7463 - [c4]Pingyi Chen, Chenglu Zhu, Zhongyi Shui, Jiatong Cai, Sunyi Zheng, Shichuan Zhang, Lin Yang:
Exploring Unsupervised Cell Recognition with Prior Self-activation Maps. MICCAI (8) 2023: 559-568 - 2022
- [c3]Zhongyi Shui, Shichuan Zhang, Chenglu Zhu, Bingchuan Wang, Pingyi Chen, Sunyi Zheng, Lin Yang:
End-to-End Cell Recognition by Point Annotation. MICCAI (4) 2022: 109-118 - [c2]Sunyi Zheng, Jingxiong Li, Zhongyi Shui, Chenglu Zhu, Yunlong Zhang, Pingyi Chen, Lin Yang:
ChrSNet: Chromosome Straightening Using Self-attention Guided Networks. MICCAI (4) 2022: 119-128 - [c1]Yunlong Zhang, Yuxuan Sun, Honglin Li, Sunyi Zheng, Chenglu Zhu, Lin Yang:
Benchmarking the Robustness of Deep Neural Networks to Common Corruptions in Digital Pathology. MICCAI (2) 2022: 242-252
Informal and Other Publications
- 2024
- [i21]Shichuan Zhang, Sunyi Zheng, Zhongyi Shui, Honglin Li, Lin Yang:
Multi-modal Learning with Missing Modality in Predicting Axillary Lymph Node Metastasis. CoRR abs/2401.01553 (2024) - [i20]Sunyi Zheng, Xiaonan Cui, Yuxuan Sun, Jingxiong Li, Honglin Li, Yunlong Zhang, Pingyi Chen, Xueping Jing, Zhaoxiang Ye, Lin Yang:
Benchmarking PathCLIP for Pathology Image Analysis. CoRR abs/2401.02651 (2024) - [i19]Yunlong Zhang, Zhongyi Shui, Yunxuan Sun, Honglin Li, Jingxiong Li, Chenglu Zhu, Sunyi Zheng, Lin Yang:
ADR: Attention Diversification Regularization for Mitigating Overfitting in Multiple Instance Learning based Whole Slide Image Classification. CoRR abs/2406.15303 (2024) - [i18]Pingyi Chen, Chenglu Zhu, Sunyi Zheng, Honglin Li, Lin Yang:
WSI-VQA: Interpreting Whole Slide Images by Generative Visual Question Answering. CoRR abs/2407.05603 (2024) - [i17]Honglin Li, Yusuan Sun, Chenglu Zhu, Yunlong Zhang, Shichuan Zhang, Zhongyi Shui, Pingyi Chen, Jingxiong Li, Sunyi Zheng, Can Cui, Lin Yang:
Large-scale cervical precancerous screening via AI-assisted cytology whole slide image analysis. CoRR abs/2407.19512 (2024) - 2023
- [i16]Zhongyi Shui, Sunyi Zheng, Xiaoxuan Yu, Shichuan Zhang, Honglin Li, Jingxiong Li, Lin Yang:
Deformable Proposal-Aware P2PNet: A Universal Network for Cell Recognition under Point Supervision. CoRR abs/2303.02602 (2023) - [i15]Honglin Li, Chenglu Zhu, Yunlong Zhang, Yuxuan Sun, Zhongyi Shui, Wenwei Kuang, Sunyi Zheng, Lin Yang:
Task-specific Fine-tuning via Variational Information Bottleneck for Weakly-supervised Pathology Whole Slide Image Classification. CoRR abs/2303.08446 (2023) - [i14]Yuxuan Sun, Chenglu Zhu, Sunyi Zheng, Kai Zhang, Zhongyi Shui, Xiaoxuan Yu, Yizhi Zhao, Honglin Li, Yunlong Zhang, Ruojia Zhao, Xinheng Lyu, Lin Yang:
PathAsst: Redefining Pathology through Generative Foundation AI Assistant for Pathology. CoRR abs/2305.15072 (2023) - [i13]Zhongyi Shui, Yizhi Zhao, Sunyi Zheng, Yunlong Zhang, Honglin Li, Shichuan Zhang, Xiaoxuan Yu, Chenglu Zhu, Lin Yang:
Semi-supervised Cell Recognition under Point Supervision. CoRR abs/2306.08240 (2023) - [i12]Jingxiong Li, Sunyi Zheng, Zhongyi Shui, Shichuan Zhang, Linyi Yang, Yuxuan Sun, Yunlong Zhang, Honglin Li, Yuanxin Ye, Peter M. A. van Ooijen, Kang Li, Lin Yang:
Masked conditional variational autoencoders for chromosome straightening. CoRR abs/2306.14129 (2023) - [i11]Pingyi Chen, Chenglu Zhu, Zhongyi Shui, Jiatong Cai, Sunyi Zheng, Shichuan Zhang, Lin Yang:
Exploring Unsupervised Cell Recognition with Prior Self-activation Maps. CoRR abs/2308.11144 (2023) - [i10]Yunlong Zhang, Honglin Li, Yuxuan Sun, Sunyi Zheng, Chenglu Zhu, Lin Yang:
Attention-Challenging Multiple Instance Learning for Whole Slide Image Classification. CoRR abs/2311.07125 (2023) - [i9]Yunlong Zhang, Yuxuan Sun, Sunyi Zheng, Zhongyi Shui, Chenglu Zhu, Lin Yang:
Test-Time Training for Semantic Segmentation with Output Contrastive Loss. CoRR abs/2311.07877 (2023) - [i8]Honglin Li, Yunlong Zhang, Chenglu Zhu, Jiatong Cai, Sunyi Zheng, Lin Yang:
Long-MIL: Scaling Long Contextual Multiple Instance Learning for Histopathology Whole Slide Image Analysis. CoRR abs/2311.12885 (2023) - [i7]Pingyi Chen, Honglin Li, Chenglu Zhu, Sunyi Zheng, Lin Yang:
MI-Gen: Multiple Instance Generation of Pathology Reports for Gigapixel Whole-Slide Images. CoRR abs/2311.16480 (2023) - 2022
- [i6]Yunlong Zhang, Yuxuan Sun, Honglin Li, Sunyi Zheng, Chenglu Zhu, Lin Yang:
Benchmarking the Robustness of Deep Neural Networks to Common Corruptions in Digital Pathology. CoRR abs/2206.14973 (2022) - [i5]Sunyi Zheng, Jingxiong Li, Zhongyi Shui, Chenglu Zhu, Yunlong Zhang, Pingyi Chen, Lin Yang:
ChrSNet: Chromosome Straightening using Self-attention Guided Networks. CoRR abs/2207.00147 (2022) - [i4]Zhongyi Shui, Shichuan Zhang, Chenglu Zhu, Bingchuan Wang, Pingyi Chen, Sunyi Zheng, Lin Yang:
End-to-end cell recognition by point annotation. CoRR abs/2207.00176 (2022) - [i3]Pingyi Chen, Chenglu Zhu, Zhongyi Shui, Jiatong Cai, Sunyi Zheng, Shichuan Zhang, Lin Yang:
Unsupervised Dense Nuclei Detection and Segmentation with Prior Self-activation Map For Histology Images. CoRR abs/2210.07862 (2022) - 2020
- [i2]Sunyi Zheng, Ludo J. Cornelissen, Xiaonan Cui, Xueping Jing, Raymond N. J. Veldhuis, Matthijs Oudkerk, Peter M. A. van Ooijen:
Efficient convolutional neural networks for multi-planar lung nodule detection: improvement on small nodule identification. CoRR abs/2001.04537 (2020) - 2019
- [i1]Sunyi Zheng, Jiapan Guo, Xiaonan Cui, Raymond N. J. Veldhuis, Matthijs Oudkerk, Peter M. A. van Ooijen:
Automatic Pulmonary Nodule Detection in CT Scans Using Convolutional Neural Networks Based on Maximum Intensity Projection. CoRR abs/1904.05956 (2019)
Coauthor Index
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