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Alexis Thual

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Books and Theses

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2024
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Alexis Thual:
Comparing cortical surfaces with functional magnetic resonance imaging and optimal transport : an application to decoding perceived visual semantics across individuals and species. (Comparer les surfaces corticales avec l'imagerie par résonance magnétique et le transport optimal : une application au décodage de la sémantique visuelle perçue à travers les individus et les espèces). Sorbonne University, Paris, France, 2024

Journal Articles

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2025
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Alexis Thual, Yohann Benchetrit, Felix Geilert, Jérémy Rapin, Iurii Makarov, Stanislas Dehaene, Bertrand Thirion, Hubert J. Banville, Jean-Remi King:
Sample-efficient decoding of visual stimuli from fMRI through inter-individual functional alignment. Trans. Mach. Learn. Res. 2025 (2025)

Conference and Workshop Papers

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2022
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Alexis Thual, Quang Huy Tran, Tatiana Zemskova, Nicolas Courty, Rémi Flamary, Stanislas Dehaene, Bertrand Thirion:
Aligning individual brains with fused unbalanced Gromov Wasserstein. NeurIPS 2022
2018
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Alexis Thual, Corentin Dancette, Julien Karadayi, Juan Benjumea, Emmanuel Dupoux:
A K-Nearest Neighbours Approach To Unsupervised Spoken Term Discovery. SLT 2018: 491-497

Data and Artifacts

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2024
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Nilearn Contributors, Ahmad Chamma, Aina Frau-Pascual, Alex Rothberg, Alexandre Abadie, Alexandre Abraham, Alexandre Gramfort, Alexandre Savio, Alexandre Cionca, Alexis Thual, Alisha Kodibagkar, Amadeus Kanaan, Ana Luísa Pinho, Andrés Hoyos Idrobo, Anne-Sophie Kieslinger, Ariel Rokem, Arthur Mensch, Aswin Vijayan, Audrey Duran, Ben Cipollini, Bertrand Thirion, Binh Nguyen, Caglar Cakan, Chris Gorgolewski, Chris Markiewicz, Christian Horea, Christian Gerloff, Christina Roßmanith, Colin Reininger, Connor Lane, Czarina Sy, Céline Delettre, Dan Gale, Daniel Gomez, Danilo Bzdok, David G. Ellis, Demian Wassermann, Derek Pisner, Dimitri Papadopoulos Orfanos, Elizabeth DuPre, Elvis Dohmatob, Eric Larson, Evan Edmond, Fabian Pedregosa, Franz Liem, François Paugam, Gaël Varoquaux, Gilles de Hollander, Gregory Kiar, Greydon Gilmore, Guillaume Lemaitre, Hao-Ting Wang, Himanshu Aggarwal, Ian Abenes, Jake Vogel, Ján Margeta, Jaques Grobler, Jason Gors, Javier Rasero, Jean Kossaifi, Jean-Rémi King, Jelle Roelof Dalenberg, Jeremy Lefort-Besnard, Jérôme Dockès, Jérôme-Alexis Chevalier, Johannes Wiesner, Jon Haitz Legarreta Gorrono, Jona Sassenhagen, Jordi Huguet, Joshua Teves, Julia M. Huntenburg, Julio A. Peraza-Goicolea, Kamalakar Reddy Daddy, Kevin R. Sitek, Koen Helwegen, Konrad Wagstyl, Konstantin Shmelkov, Kshitij Chawla, Kun Chen, Leonard Sasse, Loic Estève, Loïc Tetrel, Luz Paz, Manon Pietrantoni, Martin Perez-Guevara, Martin Wegrzyn, Mathias Goncalves, Mathieu Dugré, Matthias Ekman, Matthieu Joulot, Maximilian Cosmo Sitter, Mehdi Rahim, Mia Zwally, Michael Eickenberg, Michael Hanke, Michael Notter, Michael Waskom, Michelle Wang, Mohammad Torabi, Moritz Boos, Myeong Seop Song, Natasha Clarke, Neelay Shah, Nicolas Gensollen, Nikhil Krish, Oliver Warrington, Oscar Esteban, Patrick S. Sadil, Paul Bogdan, Paul Reiners, Paula Sanz-Leon, Peer Herholz, Philippe Gervais, Pierre Bellec, Pierre Glaser, Pierre-Olivier Quirion, Pradeep Reddy Raamana, Rahul Brito, Raphaël Meudec, Robert Luke, Robert Williamson, Roberto Guidotti, Ronald Phlypo, Ryan Hammonds, Rémi Gau, Sachin Patalasingh, Sage Hahn, Salma Bougacha, Sam Buck Johnson, Sami Jawhar, Simon Steinkamp, Sourav Singh, Steven L. Meisler, Suramya Pokharel, Sylvain Lan, Sylvain Takerkart, Tamer Gezici, Tarun Samanta, Taylor Salo, Thomas Bazeille, Tom Vanasse, Vasco Diogo, Vincent Michel, Virgile Fritsch, Yaroslav O. Halchenko, Yasmin Mzayek, Zvi Baratz, Óscar Nájera:
nilearn. Version 0.10.3. Zenodo, 2024 [all versions]
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Nilearn Contributors, Ahmad Chamma, Aina Frau-Pascual, Alex Rothberg, Alexandre Abadie, Alexandre Abraham, Alexandre Gramfort, Alexandre Savio, Alexandre Cionca, Alexis Thual, Alisha Kodibagkar, Amadeus Kanaan, Ana Luísa Pinho, Andrés Hoyos Idrobo, Anne-Sophie Kieslinger, Ariel Rokem, Arthur Mensch, Aswin Vijayan, Audrey Duran, Ben Cipollini, Bertrand Thirion, Binh Nguyen, Caglar Cakan, Chris Gorgolewski, Chris Markiewicz, Christian Horea, Christian Gerloff, Christina Roßmanith, Colin Reininger, Connor Lane, Czarina Sy, Céline Delettre, Dan Gale, Daniel Gomez, Danilo Bzdok, David G. Ellis, Demian Wassermann, Derek Pisner, Dimitri Papadopoulos Orfanos, Elizabeth DuPre, Elvis Dohmatob, Eric Larson, Evan Edmond, Fabian Pedregosa, Florent Pollet, Franz Liem, François Paugam, Gaël Varoquaux, Gilles de Hollander, Gregory Kiar, Greydon Gilmore, Guillaume Lemaitre, Hao-Ting Wang, Himanshu Aggarwal, Ian Abenes, Jake Vogel, Ján Margeta, Jaques Grobler, Jason Gors, Javier Rasero, Jean Kossaifi, Jean-Rémi King, Jelle Roelof Dalenberg, Jeremy Lefort-Besnard, Jérôme Dockès, Jérôme-Alexis Chevalier, Johannes Wiesner, Jon Haitz Legarreta Gorrono, Jona Sassenhagen, Jordi Huguet, Joshua Teves, Julia M. Huntenburg, Julio A. Peraza-Goicolea, Kamalakar Reddy Daddy, Kevin R. Sitek, Koen Helwegen, Konrad Wagstyl, Konstantin Shmelkov, Kshitij Chawla, Kun Chen, Leonard Sasse, Loic Estève, Loïc Tetrel, Luz Paz, Manon Pietrantoni, Martin Perez-Guevara, Martin Wegrzyn, Mathias Goncalves, Mathieu Dugré, Matthias Ekman, Matthieu Joulot, Maximilian Cosmo Sitter, Mehdi Rahim, Mia Zwally, Michael Eickenberg, Michael Hanke, Michael Notter, Michael Waskom, Michelle Wang, Mohammad Torabi, Moritz Boos, Myeong Seop Song, Natasha Clarke, Neelay Shah, Nicolas Gensollen, Nikhil Krish, Oliver Warrington, Oscar Esteban, Patrick S. Sadil, Paul Bogdan, Paul Reiners, Paula Sanz-Leon, Peer Herholz, Philippe Gervais, Pierre Bellec, Pierre Glaser, Pierre-Olivier Quirion, Pradeep Reddy Raamana, Rahul Brito, Raphaël Meudec, Robert Luke, Robert Williamson, Roberto Guidotti, Ronald Phlypo, Ryan Hammonds, Rémi Gau, Sachin Patalasingh, Sage Hahn, Salma Bougacha, Sam Buck Johnson, Sami Jawhar, Simon Steinkamp, Sourav Singh, Steven L. Meisler, Suramya Pokharel, Sylvain Lan, Sylvain Takerkart, Tamer Gezici, Tarun Samanta, Taylor Salo, Thomas Bazeille, Tom Vanasse, Vasco Diogo, Vincent Michel, Virgile Fritsch, Yaroslav O. Halchenko, Yasmin Mzayek, Zvi Baratz, Óscar Nájera:
nilearn. Version 0.10.4. Zenodo, 2024 [all versions]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Rémi Gau, Yaroslav O. Halchenko, Dimitri Papadopoulos Orfanos, Oscar Esteban, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Peter Van Dyken, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Alp Erkent, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette Mumford, Alexis Thual, Ali Khan, Basile Pinsard, Chris Holdgraf, Isla Staden, Jason A. Staph, William Drew, Ankur Sinha, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Sarthak Pati, Suganya Sundaravadivelu, Will Asciutto, Pierre Nedelec:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2024
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Rémi Gau, Yaroslav O. Halchenko, Dimitri Papadopoulos Orfanos, Oscar Esteban, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Peter Van Dyken, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Alp Erkent, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette Mumford, Philip A Cook, Alexis Thual, Ali R. Khan, Basile Pinsard, Chris Holdgraf, Isla Staden, Jason A. Staph, William Drew, Ankur Sinha, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Sarthak Pati, Suganya Sundaravadivelu, Will Asciutto, Pierre Nedelec:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2024
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Rémi Gau, Dimitri Papadopoulos Orfanos, Oscar Esteban, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Peter Van Dyken, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Alp Erkent, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette Mumford, Alexis Thual, Basile Pinsard, Chris Holdgraf, Isla Staden, Jason A. Staph, William Drew, Ali R. Khan, Ankur Sinha, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Sarthak Pati, Suganya Sundaravadivelu, Will Asciutto, Pierre Nedelec:
PyBIDS: Python tools for BIDS datasets. Version 0.16.5. Zenodo, 2024 [all versions]
[d9]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Rémi Gau, Dimitri Papadopoulos Orfanos, Oscar Esteban, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Peter Van Dyken, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Alp Erkent, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette Mumford, Alexis Thual, Ali R. Khan, Basile Pinsard, Chris Holdgraf, Isla Staden, Jason A. Staph, William Drew, Ankur Sinha, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Sarthak Pati, Suganya Sundaravadivelu, Will Asciutto, Pierre Nedelec:
PyBIDS: Python tools for BIDS datasets. Version 0.17.0. Zenodo, 2024 [all versions]
2023
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Nilearn Contributors, Ahmad Chamma, Aina Frau-Pascual, Alex Rothberg, Alexandre Abadie, Alexandre Abraham, Alexandre Gramfort, Alexandre Savio, Alexandre Cionca, Alexis Thual, Alisha Kodibagkar, Amadeus Kanaan, Ana Luísa Pinho, Andrés Hoyos Idrobo, Anne-Sophie Kieslinger, Ariel Rokem, Arthur Mensch, Aswin Vijayan, Audrey Duran, Ben Cipollini, Bertrand Thirion, Binh Nguyen, Caglar Cakan, Chris Gorgolewski, Chris Markiewicz, Christian Horea, Christian Gerloff, Colin Reininger, Connor Lane, Czarina Sy, Céline Delettre, Dan Gale, Daniel Gomez, Danilo Bzdok, David G. Ellis, Demian Wassermann, Derek Pisner, Dimitri Papadopoulos Orfanos, Elizabeth DuPre, Elvis Dohmatob, Eric Larson, Evan Edmond, Fabian Pedregosa, Franz Liem, François Paugam, Gaël Varoquaux, Gilles de Hollander, Gregory Kiar, Greydon Gilmore, Guillaume Lemaitre, Hao-Ting Wang, Himanshu Aggarwal, Ian Abenes, Jake Vogel, Ján Margeta, Jaques Grobler, Jason Gors, Javier Rasero, Jean Kossaifi, Jean-Rémi King, Jelle Roelof Dalenberg, Jeremy Lefort-Besnard, Jérôme Dockès, Jérôme-Alexis Chevalier, Johannes Wiesner, Jon Haitz Legarreta Gorrono, Jona Sassenhagen, Joshua Teves, Julia M. Huntenburg, Julio A. Peraza-Goicolea, Kamalakar Reddy Daddy, Kevin R. Sitek, Koen Helwegen, Konrad Wagstyl, Konstantin Shmelkov, Kshitij Chawla, Kun Chen, Leonard Sasse, Loic Estève, Loïc Tetrel, Luz Paz, Manon Pietrantoni, Martin Perez-Guevara, Martin Wegrzyn, Mathias Goncalves, Mathieu Dugré, Matthias Ekman, Matthieu Joulot, Maximilian Cosmo Sitter, Mehdi Rahim, Michael Eickenberg, Michael Hanke, Michael Notter, Michael Waskom, Michelle Wang, Mohammad Torabi, Moritz Boos, Myeong Seop Song, Natasha Clarke, Neelay Shah, Nicolas Gensollen, Oliver Warrington, Oscar Esteban, Patrick S. Sadil, Paul Bogdan, Paula Sanz-Leon, Peer Herholz, Philippe Gervais, Pierre Bellec, Pierre Glaser, Pierre-Olivier Quirion, Pradeep Reddy Raamana, Rahul Brito, Raphaël Meudec, Robert Luke, Robert Williamson, Roberto Guidotti, Ronald Phlypo, Ryan Hammonds, Rémi Gau, Sachin Patalasingh, Sage Hahn, Salma Bougacha, Sam Buck Johnson, Sami Jawhar, Simon Steinkamp, Sourav Singh, Steven L. Meisler, Sylvain Lan, Sylvain Takerkart, Tarun Samanta, Taylor Salo, Thomas Bazeille, Tom Vanasse, Vasco Diogo, Vincent Michel, Virgile Fritsch, Yaroslav O. Halchenko, Yasmin Mzayek, Zvi Baratz, Óscar Nájera:
nilearn. Version 0.10.2. Zenodo, 2023 [all versions]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Oscar Esteban, Rémi Gau, Dimitri Papadopoulos Orfanos, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette Mumford, Alexis Thual, Chris Holdgraf, Isla Staden, Jason A. Staph, William Drew, Ankur Sinha, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Sarthak Pati, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Version 0.16.0. Zenodo, 2023 [all versions]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Oscar Esteban, Quinten McNamara, Krista DeStasio, Rémi Gau, Jean-Baptiste Poline, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Dimitri Papadopoulos Orfanos, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette Mumford, Alexis Thual, Chris Holdgraf, Isla Staden, Jason A. Staph, William Drew, Ankur Sinha, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Sarthak Pati, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Version 0.15.6. Zenodo, 2023 [all versions]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Dimitri Papadopoulos Orfanos, Oscar Esteban, Rémi Gau, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Peter Van Dyken, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette Mumford, Alexis Thual, Chris Holdgraf, Isla Staden, Jason A. Staph, William Drew, Ankur Sinha, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Sarthak Pati, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Version 0.16.1. Zenodo, 2023 [all versions]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Dimitri Papadopoulos Orfanos, Oscar Esteban, Rémi Gau, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Peter Van Dyken, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette Mumford, Alexis Thual, Chris Holdgraf, Isla Staden, Jason A. Staph, William Drew, Ankur Sinha, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Sarthak Pati, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Version 0.16.2. Zenodo, 2023 [all versions]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Dimitri Papadopoulos Orfanos, Oscar Esteban, Rémi Gau, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Peter Van Dyken, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette Mumford, Alexis Thual, Chris Holdgraf, Isla Staden, Jason A. Staph, William Drew, Ankur Sinha, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Sarthak Pati, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Version 0.16.3. Zenodo, 2023 [all versions]
2022
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Oscar Esteban, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Rémi Gau, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Dimitri Papadopoulos Orfanos, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette A. Mumford, Alexis Thual, Chris Holdgraf, Isla Staden, Jason A. Staph, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Version 0.15.3. Zenodo, 2022 [all versions]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Oscar Esteban, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Rémi Gau, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Dimitri Papadopoulos Orfanos, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette Mumford, Alexis Thual, Chris Holdgraf, Isla Staden, Jason A. Staph, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Version 0.15.5. Zenodo, 2022 [all versions]

Informal and Other Publications

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2025
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Louis Jalouzot, Alexis Thual, Yair Lakretz, Christophe Pallier, Bertrand Thirion:
Optimizing fMRI Data Acquisition for Decoding Natural Speech with Limited Participants. CoRR abs/2505.21304 (2025)
2023
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Alexis Thual, Yohann Benchetrit, Felix Geilert, Jérémy Rapin, Iurii Makarov, Hubert J. Banville, Jean-Rémi King:
Aligning brain functions boosts the decoding of visual semantics in novel subjects. CoRR abs/2312.06467 (2023)

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