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Journal Articles
- 2023
[j18]David S. Wishart
, Sagan Girod, Harrison Peters, Eponine Oler, Juan Jovel, Zachary Budinski, Ralph Milford, Vicki W. Lui, Zinat Sayeeda, Robert Mah, William Wei, Hasan Badran, Elvis J. Lo, Mai Yamamoto, Yannick Djoumbou Feunang, Naama Karu, Vasuk Gautam:
ChemFOnt: the chemical functional ontology resource. Nucleic Acids Res. 51(D1): 1220-1229 (2023)- 2022
- [j17]David S. Wishart, Siyang Tian, Dana Allen, Eponine Oler, Harrison Peters, Vicki W. Lui, Vasuk Gautam, Yannick Djoumbou Feunang, Russell Greiner, Thomas O. Metz:
BioTransformer 3.0 - a web server for accurately predicting metabolic transformation products. Nucleic Acids Res. 50(W1): 115-123 (2022) - 2021
- [j16]Fidele Ntie-Kang, Kiran K. Telukunta, Serge A. T. Fobofou, Victor Chukwudi Osamor, Samuel A. Egieyeh, Marilia Valli, Yannick Djoumbou Feunang, Maria Sorokina, Conrad Stork, Neann Mathai, Paul F. Zierep, Ana L. Chávez-Hernández, Miquel Duran-Frigola, Smith B. Babiaka, Romuald Tematio Fouedjou, Donatus B. Eni, Simeon Akame, Augustine B. Arreyetta-Bawak, Oyere T. Ebob, Jonathan A. Metuge, Boris D. Bekono, Mustafa A. Isa, Raphael Onuku, Daniel M. Shadrack, Thommas M. Musyoka, Vaishali M. Patil, Justin J. J. van der Hooft, Vanderlan da Silva Bolzani, José L. Medina-Franco, Johannes Kirchmair, Tilmann Weber, Özlem Tastan Bishop, Marnix H. Medema, Ludger A. Wessjohann, Jutta Ludwig-Müller:
Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop. J. Cheminformatics 13(1): 64 (2021) - 2019
- [j15]Yannick Djoumbou Feunang, Jarlei Fiamoncini, Alberto Gil-de-la-Fuente, Russell Greiner, Claudine Manach, David S. Wishart:
BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification. J. Cheminformatics 11(1): 2:1-2:25 (2019) - 2018
- [j14]Siyang Tian, Yannick Djoumbou Feunang, Russell Greiner, David S. Wishart:
CypReact: A Software Tool for in Silico Reactant Prediction for Human Cytochrome P450 Enzymes. J. Chem. Inf. Model. 58(6): 1282-1291 (2018) - [j13]David S. Wishart, Yannick D. Feunang, An Chi Guo, Elvis J. Lo, Ana Marcu, Jason R. Grant, Tanvir Sajed, Daniel Johnson, Carin Li, Zinat Sayeeda, Nazanin Assempour, Ithayavani Iynkkaran, Yifeng Liu, Adam Maciejewski, Nicola Gale, Alex Wilson, Lucy Chin, Ryan Cummings, Diana Le, Allison Pon, Craig Knox, Michael Wilson:
DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 46(Database-Issue): D1074-D1082 (2018) - [j12]David S. Wishart, Yannick Djoumbou Feunang, Ana Marcu, An Chi Guo, Kevin Y. H. Liang, Rosa Vázquez-Fresno, Tanvir Sajed, Daniel Johnson, Carin Li, Naama Karu, Zinat Sayeeda, Elvis J. Lo, Nazanin Assempour, Mark V. Berjanskii, Sandeep Singhal, David Arndt, Yongjie Liang, Hasan Badran, Jason R. Grant, Arnau Serra-Cayuela, Yifeng Liu, Rupa Mandal, Vanessa Neveu, Allison Pon, Craig Knox, Michael Wilson, Claudine Manach, Augustin Scalbert:
HMDB 4.0: the human metabolome database for 2018. Nucleic Acids Res. 46(Database-Issue): D608-D617 (2018) - 2017
- [j11]Miguel Ramirez-Gaona, Ana Marcu, Allison Pon, An Chi Guo, Tanvir Sajed, Noah A. Wishart, Naama Karu, Yannick Djoumbou Feunang, David Arndt, David S. Wishart:
YMDB 2.0: a significantly expanded version of the yeast metabolome database. Nucleic Acids Res. 45(Database-Issue): D440-D445 (2017) - 2016
- [j10]Yannick Djoumbou, Roman Eisner, Craig Knox, Leonid L. Chepelev, Janna Hastings, Gareth I. Owen, Eoin Fahy, Christoph Steinbeck, Shankar Subramanian, Evan Bolton, Russell Greiner, David S. Wishart:
ClassyFire: automated chemical classification with a comprehensive, computable taxonomy. J. Cheminformatics 8(1): 61:1-61:20 (2016) - [j9]Tanvir Sajed, Ana Marcu, Miguel Ramirez-Gaona, Allison Pon, An Chi Guo, Craig Knox, Michael Wilson, Jason R. Grant, Yannick Djoumbou, David S. Wishart:
ECMDB 2.0: A richer resource for understanding the biochemistry of E. coli. Nucleic Acids Res. 44(Database-Issue): 495-501 (2016) - 2015
- [j8]David S. Wishart, David Arndt, Allison Pon, Tanvir Sajed, Anchi Guo, Yannick Djoumbou, Craig Knox, Michael Wilson, Yongjie Liang, Jason R. Grant, Yifeng Liu, Seyed Ali Goldansaz, Stephen M. Rappaport:
T3DB: the toxic exposome database. Nucleic Acids Res. 43(Database-Issue): 928-934 (2015) - 2014
- [j7]Timothy Jewison, Yilu Su, Fatemeh Miri Disfany, Yongjie Liang, Craig Knox, Adam Maciejewski, Jenna Poelzer, Jessica Huynh, You Zhou, David Arndt, Yannick Djoumbou, Yifeng Liu, Lu Deng, Anchi Guo, Beomsoo Han, Allison Pon, Michael Wilson, Shahrzad Rafatnia, Philip Liu, David S. Wishart:
SMPDB 2.0: Big Improvements to the Small Molecule Pathway Database. Nucleic Acids Res. 42(Database-Issue): 478-484 (2014) - [j6]Vivian Law, Craig Knox, Yannick Djoumbou, Timothy Jewison, Anchi Guo, Yifeng Liu, Adam Maciejewski, David Arndt, Michael Wilson, Vanessa Neveu, Alexandra Tang, Geraldine Gabriel, Carol Ly, Sakina Adamjee, Zerihun T. Dame, Beomsoo Han, You Zhou, David S. Wishart:
DrugBank 4.0: shedding new light on drug metabolism. Nucleic Acids Res. 42(Database-Issue): 1091-1097 (2014) - 2013
- [j5]Anchi Guo, Timothy Jewison, Michael Wilson, Yifeng Liu, Craig Knox, Yannick Djoumbou, Patrick Lo, Rupasri Mandal, Ram Krishnamurthy, David S. Wishart:
ECMDB: The E. coli Metabolome Database. Nucleic Acids Res. 41(Database-Issue): 625-630 (2013) - [j4]David S. Wishart, Timothy Jewison, Anchi Guo, Michael Wilson, Craig Knox, Yifeng Liu, Yannick Djoumbou, Rupasri Mandal, Farid Aziat, Edison Dong, Souhaila Bouatra, Igor Sinelnikov, David Arndt, Jianguo Xia, Philip Liu, Faizath Yallou, Trent C. Bjorndahl, Rolando Perez-Pineiro, Roman Eisner, Felicity Allen, Vanessa Neveu, Russell Greiner, Augustin Scalbert:
HMDB 3.0 - The Human Metabolome Database in 2013. Nucleic Acids Res. 41(Database-Issue): 801-807 (2013) - 2012
- [j3]Timothy Jewison, Craig Knox, Vanessa Neveu, Yannick Djoumbou, Anchi Guo, Jacqueline Lee, Philip Liu, Rupasri Mandal, Ram Krishnamurthy, Igor Sinelnikov, Michael Wilson, David S. Wishart:
YMDB: the Yeast Metabolome Database. Nucleic Acids Res. 40(Database-Issue): 815-820 (2012) - 2011
- [j2]Craig Knox, Vivian Law, Timothy Jewison, Philip Liu, Son Ly, Alex Frolkis, Allison Pon, Kelly Banco, Christine Mak, Vanessa Neveu, Yannick Djoumbou, Roman Eisner, Anchi Guo, David S. Wishart:
DrugBank 3.0: a comprehensive resource for 'Omics' research on drugs. Nucleic Acids Res. 39(Database-Issue): 1035-1041 (2011) - 2010
- [j1]Emilia Lim, Allison Pon, Yannick Djoumbou, Craig Knox, Savita Shrivastava, Anchi Guo, Vanessa Neveu, David S. Wishart:
T3DB: a comprehensively annotated database of common toxins and their targets. Nucleic Acids Res. 38(Database-Issue): 781-786 (2010)
Coauthor Index
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